Wall clock time and date at job start Tue Mar 31 2020 08:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46753 * 2 1 4 4 C 1.53002 * 109.47064 * 240.00499 * 2 1 3 5 5 C 1.50694 * 109.47200 * 120.00520 * 2 1 3 6 6 C 1.38360 * 119.85722 * 60.00297 * 5 2 1 7 7 C 1.37957 * 120.14382 * 180.25691 * 6 5 2 8 8 C 1.39576 * 119.85528 * 359.51406 * 7 6 5 9 9 C 1.47845 * 120.14298 * 180.21013 * 8 7 6 10 10 O 1.21557 * 119.99523 * 180.29012 * 9 8 7 11 11 N 1.34771 * 120.00437 * 0.29770 * 9 8 7 12 12 C 1.46493 * 120.00235 * 179.97438 * 11 9 8 13 13 C 1.53008 * 109.47247 * 179.97438 * 12 11 9 14 14 C 1.53003 * 109.46889 * 299.99929 * 13 12 11 15 15 C 1.52998 * 109.46913 * 59.99958 * 13 12 11 16 16 C 1.50698 * 109.47104 * 180.02562 * 13 12 11 17 17 H 1.08006 * 119.99948 * 359.97438 * 16 13 12 18 18 C 1.37874 * 119.99966 * 180.02562 * 16 13 12 19 19 N 1.31517 * 120.00023 * 359.97438 * 18 16 13 20 20 Si 1.86799 * 120.00116 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.47395 * 89.99719 * 20 18 16 22 22 H 1.48501 * 109.46906 * 209.99494 * 20 18 16 23 23 H 1.48504 * 109.46929 * 329.99225 * 20 18 16 24 24 C 1.39579 * 119.70688 * 0.50129 * 8 7 6 25 25 C 1.37955 * 119.85778 * 359.73229 * 24 8 7 26 26 H 1.08992 * 109.47077 * 299.99285 * 1 2 3 27 27 H 1.08999 * 109.46905 * 59.99753 * 1 2 3 28 28 H 1.09000 * 109.46800 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46702 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47617 * 300.00369 * 3 2 1 31 31 H 1.09005 * 109.46855 * 60.00591 * 3 2 1 32 32 H 1.09000 * 109.47340 * 299.99704 * 4 2 1 33 33 H 1.09000 * 109.47010 * 59.99812 * 4 2 1 34 34 H 1.09003 * 109.46945 * 179.97438 * 4 2 1 35 35 H 1.08002 * 119.92305 * 359.97238 * 6 5 2 36 36 H 1.08004 * 120.06851 * 179.74094 * 7 6 5 37 37 H 0.97006 * 119.99552 * 359.97438 * 11 9 8 38 38 H 1.08998 * 109.47295 * 300.00129 * 12 11 9 39 39 H 1.09003 * 109.46891 * 60.00262 * 12 11 9 40 40 H 1.08999 * 109.46774 * 60.00064 * 14 13 12 41 41 H 1.09001 * 109.47116 * 179.97438 * 14 13 12 42 42 H 1.08994 * 109.47512 * 300.00426 * 14 13 12 43 43 H 1.08998 * 109.46850 * 60.00164 * 15 13 12 44 44 H 1.09001 * 109.46866 * 180.02562 * 15 13 12 45 45 H 1.08999 * 109.46974 * 300.00074 * 15 13 12 46 46 H 0.96997 * 120.00245 * 179.97438 * 19 18 16 47 47 H 1.08003 * 120.06670 * 179.70533 * 24 8 7 48 48 H 1.07997 * 119.92668 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2303 6 6 1.6964 -2.0352 1.4462 7 6 2.1486 -2.6898 2.5732 8 6 2.9552 -2.0159 3.4916 9 6 3.4472 -2.7126 4.6992 10 8 4.1451 -2.1215 5.4999 11 7 3.1221 -4.0031 4.9122 12 6 3.6101 -4.6936 6.1084 13 6 3.1002 -6.1362 6.1083 14 6 1.5702 -6.1363 6.1079 15 6 3.6107 -6.8574 4.8592 16 6 3.6017 -6.8463 7.3393 17 1 4.2225 -6.3214 8.0503 18 6 3.2691 -8.1665 7.5572 19 7 2.5136 -8.8059 6.6910 20 14 3.8913 -9.0470 9.0826 21 1 2.9126 -8.8766 10.1864 22 1 4.0568 -10.4927 8.7867 23 1 5.1991 -8.4716 9.4873 24 6 3.2901 -0.6794 3.2679 25 6 2.8273 -0.0350 2.1394 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6768 -1.7488 -1.2494 33 1 1.6767 -0.2072 -2.1392 34 1 3.1301 -0.7207 -1.2495 35 1 1.0749 -2.5565 0.7331 36 1 1.8822 -3.7227 2.7426 37 1 2.5649 -4.4747 4.2732 38 1 4.7001 -4.6931 6.1090 39 1 3.2460 -4.1800 6.9983 40 1 1.2072 -5.6225 5.2178 41 1 1.2069 -7.1640 6.1074 42 1 1.2065 -5.6224 6.9976 43 1 4.7006 -6.8573 4.8596 44 1 3.2470 -7.8850 4.8589 45 1 3.2475 -6.3436 3.9692 46 1 2.2799 -9.7347 6.8441 47 1 3.9099 -0.1509 3.9772 48 1 3.0854 0.9992 1.9654 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315606608.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:40:22 Heat of formation + Delta-G solvation = -36.894282 kcal Electronic energy + Delta-G solvation = -24727.552185 eV Core-core repulsion = 21360.403322 eV Total energy + Delta-G solvation = -3367.148863 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.29136 -38.94307 -36.55365 -36.02802 -33.37191 -31.37375 -30.92219 -30.00115 -27.65082 -27.53693 -25.77105 -25.73644 -25.11463 -23.50891 -22.24976 -20.54346 -19.29981 -18.85637 -17.84242 -16.16748 -15.69813 -15.59701 -14.91901 -14.78099 -14.63396 -14.59476 -14.51014 -13.85309 -13.67150 -13.41943 -13.07560 -12.92592 -12.73195 -12.67280 -12.23733 -12.13345 -12.10890 -11.97049 -11.57558 -11.39580 -11.22171 -11.20130 -10.97586 -10.86949 -10.69971 -10.69368 -10.39512 -10.20736 -9.64380 -9.62485 -9.26457 -9.03055 -8.81103 -8.79729 -8.43940 -8.29048 -6.02549 -4.12544 0.89309 1.33618 3.09714 3.28336 3.35285 3.39164 3.72678 3.97028 4.29010 4.40191 4.44874 4.69645 4.85339 4.90284 4.98049 5.11746 5.24288 5.25475 5.30371 5.32402 5.46302 5.48871 5.57927 5.58197 5.66870 5.75135 5.84590 5.92757 5.96609 6.00390 6.20657 6.30330 6.32492 6.41672 6.47085 6.50699 6.77236 6.80993 6.83376 6.94011 7.01240 7.02032 7.34646 7.54807 7.68975 8.00074 8.04218 8.14947 8.37889 8.68190 8.88194 9.53296 10.98970 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.031238 B = 0.002724 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.125510 B =10275.955294 C =10799.796717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.032 4.032 3 C -0.145 4.145 4 C -0.139 4.139 5 C -0.054 4.054 6 C -0.123 4.123 7 C -0.084 4.084 8 C -0.130 4.130 9 C 0.545 3.455 10 O -0.551 6.551 11 N -0.710 5.710 12 C 0.131 3.869 13 C 0.056 3.944 14 C -0.131 4.131 15 C -0.131 4.131 16 C -0.505 4.505 17 H 0.058 0.942 18 C 0.066 3.934 19 N -0.886 5.886 20 Si 0.894 3.106 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.061 4.061 25 C -0.132 4.132 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.397 0.603 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.005 0.995 41 H 0.086 0.914 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.086 0.914 45 H 0.005 0.995 46 H 0.260 0.740 47 H 0.134 0.866 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.271 15.670 -16.030 22.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.032 4.032 3 C -0.202 4.202 4 C -0.196 4.196 5 C -0.054 4.054 6 C -0.141 4.141 7 C -0.103 4.103 8 C -0.133 4.133 9 C 0.332 3.668 10 O -0.430 6.430 11 N -0.361 5.361 12 C 0.009 3.991 13 C 0.055 3.945 14 C -0.189 4.189 15 C -0.189 4.189 16 C -0.544 4.544 17 H 0.076 0.924 18 C -0.135 4.135 19 N -0.525 5.525 20 Si 0.722 3.278 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.080 4.080 25 C -0.150 4.150 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.233 0.767 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.024 0.976 41 H 0.105 0.895 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.105 0.895 45 H 0.024 0.976 46 H 0.070 0.930 47 H 0.152 0.848 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.849 15.857 -15.456 22.475 hybrid contribution 0.035 -0.845 0.567 1.018 sum -3.814 15.012 -14.889 21.484 Atomic orbital electron populations 1.21897 0.93498 1.02282 1.01942 1.19552 0.95854 0.95113 0.92704 1.21977 1.01317 0.94909 1.02006 1.21898 1.01375 1.00328 0.96019 1.19985 0.96185 0.93895 0.95340 1.20886 1.01174 0.94351 0.97730 1.21364 0.95643 0.99761 0.93492 1.20145 1.01348 0.95429 0.96364 1.18310 0.80737 0.82289 0.85480 1.90728 1.38821 1.66491 1.47000 1.46260 1.52281 1.11088 1.26443 1.21760 0.98250 0.94398 0.84724 1.18361 0.92795 0.87969 0.95356 1.21839 0.97762 1.02976 0.96312 1.21836 0.98664 1.03557 0.94833 1.20984 1.31500 0.96095 1.05825 0.92402 1.24879 0.94870 0.97289 0.96479 1.69801 1.36758 1.10787 1.35151 0.86565 0.79332 0.78735 0.83206 1.20707 1.21265 1.19899 1.21280 0.97006 0.93144 0.96539 1.21139 0.99056 1.00423 0.94352 0.92378 0.92314 0.92242 0.92139 0.92350 0.92143 0.92238 0.92317 0.92380 0.85671 0.85507 0.76652 0.92554 0.92562 0.97608 0.89525 0.95371 0.95364 0.89522 0.97599 0.93002 0.84807 0.85201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.29 37.16 0.31 -0.67 16 2 C -0.03 -0.25 0.85 -155.66 -0.13 -0.38 16 3 C -0.14 -0.96 7.13 37.16 0.26 -0.70 16 4 C -0.14 -0.97 8.29 37.16 0.31 -0.67 16 5 C -0.05 -0.54 4.77 -104.53 -0.50 -1.04 16 6 C -0.12 -1.31 8.69 -39.64 -0.34 -1.66 16 7 C -0.08 -1.06 9.54 -39.19 -0.37 -1.43 16 8 C -0.13 -1.94 5.87 -104.97 -0.62 -2.56 16 9 C 0.55 10.14 7.77 -12.33 -0.10 10.05 16 10 O -0.55 -12.02 16.35 5.32 0.09 -11.93 16 11 N -0.71 -13.20 4.91 -61.25 -0.30 -13.50 16 12 C 0.13 2.84 4.50 -4.04 -0.02 2.82 16 13 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 14 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 15 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 16 C -0.51 -13.29 8.01 -34.44 -0.28 -13.57 16 17 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 18 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 19 N -0.89 -23.61 9.35 55.43 0.52 -23.09 16 20 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 C -0.06 -0.82 9.60 -39.18 -0.38 -1.19 16 25 C -0.13 -1.42 8.96 -39.64 -0.36 -1.78 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.41 7.38 -51.93 -0.38 0.03 16 29 H 0.06 0.40 7.51 -51.93 -0.39 0.01 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.40 7.50 -51.93 -0.39 0.01 16 32 H 0.06 0.41 7.38 -51.93 -0.38 0.03 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.13 1.08 7.08 -52.49 -0.37 0.71 16 36 H 0.13 1.48 6.41 -52.48 -0.34 1.15 16 37 H 0.40 6.64 4.20 -40.82 -0.17 6.47 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 40 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 41 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 45 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 46 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 47 H 0.13 1.82 7.65 -52.48 -0.40 1.41 16 48 H 0.13 1.12 5.87 -52.49 -0.31 0.81 16 LS Contribution 371.70 15.07 5.60 5.60 Total: -1.00 -28.85 371.70 -8.71 -37.57 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -7.82 Total: 4.83 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -1.78 Total: -15.24 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.22 Total: -36.59 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.09 Total: -11.93 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.85 -8.71 -37.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315606608.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.674 kcal (2) G-P(sol) polarization free energy of solvation -28.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds