Wall clock time and date at job start Tue Mar 31 2020 08:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46753 * 2 1 4 4 C 1.53002 * 109.47064 * 240.00499 * 2 1 3 5 5 C 1.50694 * 109.47200 * 120.00520 * 2 1 3 6 6 C 1.38360 * 119.85722 * 60.00297 * 5 2 1 7 7 C 1.37957 * 120.14382 * 180.25691 * 6 5 2 8 8 C 1.39576 * 119.85528 * 359.51406 * 7 6 5 9 9 C 1.47845 * 120.14298 * 180.21013 * 8 7 6 10 10 O 1.21557 * 119.99523 * 180.29012 * 9 8 7 11 11 N 1.34771 * 120.00437 * 0.29770 * 9 8 7 12 12 C 1.46493 * 120.00235 * 179.97438 * 11 9 8 13 13 C 1.53008 * 109.47247 * 179.97438 * 12 11 9 14 14 C 1.53003 * 109.46889 * 299.99929 * 13 12 11 15 15 C 1.52998 * 109.46913 * 59.99958 * 13 12 11 16 16 C 1.50698 * 109.47104 * 180.02562 * 13 12 11 17 17 H 1.08006 * 119.99948 * 359.97438 * 16 13 12 18 18 C 1.37874 * 119.99966 * 180.02562 * 16 13 12 19 19 N 1.31517 * 120.00023 * 359.97438 * 18 16 13 20 20 Si 1.86799 * 120.00116 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.47395 * 89.99719 * 20 18 16 22 22 H 1.48501 * 109.46906 * 209.99494 * 20 18 16 23 23 H 1.48504 * 109.46929 * 329.99225 * 20 18 16 24 24 C 1.39579 * 119.70688 * 0.50129 * 8 7 6 25 25 C 1.37955 * 119.85778 * 359.73229 * 24 8 7 26 26 H 1.08992 * 109.47077 * 299.99285 * 1 2 3 27 27 H 1.08999 * 109.46905 * 59.99753 * 1 2 3 28 28 H 1.09000 * 109.46800 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46702 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47617 * 300.00369 * 3 2 1 31 31 H 1.09005 * 109.46855 * 60.00591 * 3 2 1 32 32 H 1.09000 * 109.47340 * 299.99704 * 4 2 1 33 33 H 1.09000 * 109.47010 * 59.99812 * 4 2 1 34 34 H 1.09003 * 109.46945 * 179.97438 * 4 2 1 35 35 H 1.08002 * 119.92305 * 359.97238 * 6 5 2 36 36 H 1.08004 * 120.06851 * 179.74094 * 7 6 5 37 37 H 0.97006 * 119.99552 * 359.97438 * 11 9 8 38 38 H 1.08998 * 109.47295 * 300.00129 * 12 11 9 39 39 H 1.09003 * 109.46891 * 60.00262 * 12 11 9 40 40 H 1.08999 * 109.46774 * 60.00064 * 14 13 12 41 41 H 1.09001 * 109.47116 * 179.97438 * 14 13 12 42 42 H 1.08994 * 109.47512 * 300.00426 * 14 13 12 43 43 H 1.08998 * 109.46850 * 60.00164 * 15 13 12 44 44 H 1.09001 * 109.46866 * 180.02562 * 15 13 12 45 45 H 1.08999 * 109.46974 * 300.00074 * 15 13 12 46 46 H 0.96997 * 120.00245 * 179.97438 * 19 18 16 47 47 H 1.08003 * 120.06670 * 179.70533 * 24 8 7 48 48 H 1.07997 * 119.92668 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2303 6 6 1.6964 -2.0352 1.4462 7 6 2.1486 -2.6898 2.5732 8 6 2.9552 -2.0159 3.4916 9 6 3.4472 -2.7126 4.6992 10 8 4.1451 -2.1215 5.4999 11 7 3.1221 -4.0031 4.9122 12 6 3.6101 -4.6936 6.1084 13 6 3.1002 -6.1362 6.1083 14 6 1.5702 -6.1363 6.1079 15 6 3.6107 -6.8574 4.8592 16 6 3.6017 -6.8463 7.3393 17 1 4.2225 -6.3214 8.0503 18 6 3.2691 -8.1665 7.5572 19 7 2.5136 -8.8059 6.6910 20 14 3.8913 -9.0470 9.0826 21 1 2.9126 -8.8766 10.1864 22 1 4.0568 -10.4927 8.7867 23 1 5.1991 -8.4716 9.4873 24 6 3.2901 -0.6794 3.2679 25 6 2.8273 -0.0350 2.1394 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6768 -1.7488 -1.2494 33 1 1.6767 -0.2072 -2.1392 34 1 3.1301 -0.7207 -1.2495 35 1 1.0749 -2.5565 0.7331 36 1 1.8822 -3.7227 2.7426 37 1 2.5649 -4.4747 4.2732 38 1 4.7001 -4.6931 6.1090 39 1 3.2460 -4.1800 6.9983 40 1 1.2072 -5.6225 5.2178 41 1 1.2069 -7.1640 6.1074 42 1 1.2065 -5.6224 6.9976 43 1 4.7006 -6.8573 4.8596 44 1 3.2470 -7.8850 4.8589 45 1 3.2475 -6.3436 3.9692 46 1 2.2799 -9.7347 6.8441 47 1 3.9099 -0.1509 3.9772 48 1 3.0854 0.9992 1.9654 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315606608.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:40:21 Heat of formation + Delta-G solvation = -50.755444 kcal Electronic energy + Delta-G solvation = -24728.153250 eV Core-core repulsion = 21360.403322 eV Total energy + Delta-G solvation = -3367.749928 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.39822 -40.16394 -38.18418 -37.00788 -35.10066 -32.94387 -32.04004 -31.11369 -28.22110 -28.04756 -27.59086 -27.52141 -26.90947 -24.67731 -23.17554 -21.83254 -20.66152 -20.09012 -19.17887 -17.84268 -17.09751 -16.79541 -16.38323 -16.31369 -15.84755 -15.72754 -15.12088 -14.99278 -14.79907 -14.62366 -14.56301 -14.30746 -13.99776 -13.59893 -13.58818 -13.22404 -13.11663 -12.88335 -12.73354 -12.69645 -12.60977 -12.48673 -12.34881 -12.27470 -12.14774 -11.79906 -11.68639 -11.51420 -11.38444 -11.32121 -10.94931 -10.71838 -10.41485 -10.09524 -9.94957 -9.64462 -8.03570 -6.19337 -0.14318 0.41746 1.42056 1.44809 1.53155 1.85711 2.24731 2.48131 2.87607 3.20045 3.56247 3.75506 3.83547 4.00091 4.12919 4.15065 4.37853 4.38772 4.43307 4.47405 4.52679 4.67447 4.83400 4.84198 4.84556 4.94844 4.95942 5.01862 5.02265 5.07481 5.08992 5.09325 5.13460 5.16473 5.26672 5.31601 5.35865 5.40627 5.48796 5.50348 5.53810 5.64743 5.66004 5.66460 5.93972 6.12421 6.18689 6.41556 6.59774 6.84169 7.21578 7.48330 8.95618 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.031238 B = 0.002724 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.125510 B =10275.955294 C =10799.796717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.032 4.032 3 C -0.147 4.147 4 C -0.139 4.139 5 C -0.044 4.044 6 C -0.121 4.121 7 C -0.085 4.085 8 C -0.156 4.156 9 C 0.544 3.456 10 O -0.592 6.592 11 N -0.704 5.704 12 C 0.146 3.854 13 C 0.052 3.948 14 C -0.121 4.121 15 C -0.122 4.122 16 C -0.530 4.530 17 H 0.044 0.956 18 C 0.029 3.971 19 N -0.899 5.899 20 Si 0.946 3.054 21 H -0.279 1.279 22 H -0.281 1.281 23 H -0.277 1.277 24 C -0.072 4.072 25 C -0.129 4.129 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.151 0.849 36 H 0.135 0.865 37 H 0.408 0.592 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.035 0.965 41 H 0.065 0.935 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.065 0.935 45 H 0.035 0.965 46 H 0.261 0.739 47 H 0.123 0.877 48 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.436 16.561 -18.434 25.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.032 4.032 3 C -0.204 4.204 4 C -0.196 4.196 5 C -0.044 4.044 6 C -0.139 4.139 7 C -0.103 4.103 8 C -0.159 4.159 9 C 0.334 3.666 10 O -0.474 6.474 11 N -0.355 5.355 12 C 0.023 3.977 13 C 0.052 3.948 14 C -0.179 4.179 15 C -0.179 4.179 16 C -0.568 4.568 17 H 0.062 0.938 18 C -0.171 4.171 19 N -0.537 5.537 20 Si 0.773 3.227 21 H -0.205 1.205 22 H -0.207 1.207 23 H -0.202 1.202 24 C -0.091 4.091 25 C -0.147 4.147 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.169 0.831 36 H 0.153 0.847 37 H 0.246 0.754 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.084 0.916 42 H 0.037 0.963 43 H 0.037 0.963 44 H 0.084 0.916 45 H 0.054 0.946 46 H 0.071 0.929 47 H 0.141 0.859 48 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.031 16.742 -17.884 25.009 hybrid contribution 0.369 -1.040 1.223 1.647 sum -4.662 15.702 -16.661 23.364 Atomic orbital electron populations 1.21906 0.92708 1.02571 1.02423 1.19631 0.96384 0.95500 0.91638 1.22000 1.01354 0.94288 1.02744 1.21906 1.01008 1.00553 0.96142 1.20384 0.94528 0.93790 0.95684 1.21182 1.00801 0.94644 0.97267 1.21481 0.95097 1.00187 0.93575 1.19903 1.03937 0.96132 0.95890 1.18902 0.79728 0.81879 0.86134 1.90696 1.40725 1.67260 1.48758 1.46060 1.52490 1.11306 1.25671 1.21340 0.97112 0.93728 0.85549 1.18353 0.93290 0.88489 0.94701 1.21685 0.97066 1.01837 0.97339 1.21683 0.97995 1.02502 0.95751 1.21258 1.31851 0.96781 1.06936 0.93760 1.25448 0.95119 0.97812 0.98718 1.69898 1.36980 1.10880 1.35981 0.85748 0.78629 0.77843 0.80515 1.20460 1.20698 1.20162 1.21326 0.97452 0.92798 0.97500 1.21371 0.98553 1.01398 0.93333 0.92993 0.90823 0.92080 0.92163 0.90970 0.92165 0.92077 0.90826 0.92996 0.83125 0.84679 0.75404 0.94224 0.94210 0.94600 0.91605 0.96278 0.96267 0.91601 0.94593 0.92949 0.85895 0.83002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.29 71.98 0.60 -0.88 16 2 C -0.03 -0.38 0.85 -52.93 -0.05 -0.42 16 3 C -0.15 -1.48 7.13 71.98 0.51 -0.97 16 4 C -0.14 -1.47 8.29 71.98 0.60 -0.88 16 5 C -0.04 -0.76 4.77 -19.81 -0.09 -0.85 16 6 C -0.12 -2.23 8.69 22.23 0.19 -2.04 16 7 C -0.08 -1.99 9.54 22.53 0.21 -1.77 16 8 C -0.16 -4.61 5.87 -20.09 -0.12 -4.72 16 9 C 0.54 20.58 7.77 86.79 0.67 21.26 16 10 O -0.59 -26.81 16.35 -3.89 -0.06 -26.88 16 11 N -0.70 -26.17 4.91 -465.98 -2.29 -28.45 16 12 C 0.15 6.50 4.50 86.38 0.39 6.89 16 13 C 0.05 2.46 0.50 -52.93 -0.03 2.44 16 14 C -0.12 -5.47 8.08 71.98 0.58 -4.89 16 15 C -0.12 -5.47 8.08 71.98 0.58 -4.89 16 16 C -0.53 -28.39 8.01 25.60 0.21 -28.18 16 17 H 0.04 2.43 7.74 -2.91 -0.02 2.40 16 18 C 0.03 1.53 5.15 84.65 0.44 1.97 16 19 N -0.90 -47.99 9.35 21.45 0.20 -47.79 16 20 Si 0.95 42.88 29.54 68.60 2.03 44.91 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 24 C -0.07 -1.90 9.60 22.53 0.22 -1.69 16 25 C -0.13 -2.55 8.96 22.23 0.20 -2.35 16 26 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.63 7.38 -2.39 -0.02 0.62 16 29 H 0.06 0.62 7.51 -2.39 -0.02 0.60 16 30 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.62 7.50 -2.38 -0.02 0.60 16 32 H 0.06 0.63 7.38 -2.39 -0.02 0.62 16 33 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.15 2.01 7.08 -2.91 -0.02 1.99 16 36 H 0.14 2.86 6.41 -2.91 -0.02 2.84 16 37 H 0.41 13.15 4.20 -92.70 -0.39 12.76 16 38 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.04 1.35 6.86 -2.39 -0.02 1.33 16 41 H 0.07 3.26 6.07 -2.39 -0.01 3.25 16 42 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.07 3.26 6.07 -2.39 -0.01 3.25 16 45 H 0.04 1.35 6.86 -2.39 -0.02 1.33 16 46 H 0.26 13.39 8.31 -92.71 -0.77 12.62 16 47 H 0.12 3.45 7.65 -2.91 -0.02 3.43 16 48 H 0.15 2.27 5.87 -2.91 -0.02 2.26 16 Total: -1.00 -62.95 371.70 5.54 -57.41 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.55 Total: 22.78 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: 5.11 Total: -21.98 kcal Atomic # 7 Polarization: -74.16 SS G_CDS: -2.09 Total: -76.25 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.06 Total: -26.88 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -62.95 5.54 -57.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315606608.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.654 kcal (2) G-P(sol) polarization free energy of solvation -62.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds