Wall clock time and date at job start Tue Mar 31 2020 09:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47200 * 2 1 4 4 C 1.53004 * 109.46925 * 240.00122 * 2 1 3 5 5 C 1.52997 * 109.47049 * 120.00147 * 2 1 3 6 6 H 1.08996 * 109.47437 * 300.02614 * 5 2 1 7 7 N 1.46895 * 109.47234 * 60.02839 * 5 2 1 8 8 C 1.46899 * 111.00086 * 216.02656 * 7 5 2 9 9 C 1.50703 * 109.47141 * 172.75208 * 8 7 5 10 10 C 1.38307 * 119.93114 * 269.73033 * 9 8 7 11 11 C 1.38100 * 120.06675 * 179.72665 * 10 9 8 12 12 C 1.38878 * 119.93077 * 0.56940 * 11 10 9 13 13 O 1.35753 * 120.06738 * 179.68317 * 12 11 10 14 14 C 1.34831 * 116.99854 * 186.07501 * 13 12 11 15 15 H 1.08001 * 119.99659 * 354.88337 * 14 13 12 16 16 C 1.38652 * 120.00160 * 174.87711 * 14 13 12 17 17 N 1.31554 * 120.00242 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99714 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.46997 * 89.99820 * 18 16 14 20 20 H 1.48498 * 109.47138 * 209.99766 * 18 16 14 21 21 H 1.48497 * 109.47501 * 330.00048 * 18 16 14 22 22 C 1.38875 * 119.86124 * 359.70274 * 12 11 10 23 23 C 1.38105 * 119.93438 * 359.97438 * 22 12 11 24 24 C 1.53004 * 109.46878 * 180.02562 * 5 2 1 25 25 C 1.53001 * 117.50000 * 241.42412 * 24 5 2 26 26 C 1.52997 * 117.49820 * 172.76573 * 24 5 2 27 27 H 1.08997 * 109.46755 * 304.73488 * 1 2 3 28 28 H 1.08999 * 109.47180 * 64.73370 * 1 2 3 29 29 H 1.09002 * 109.47013 * 184.73790 * 1 2 3 30 30 H 1.08994 * 109.47038 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47344 * 300.00581 * 3 2 1 32 32 H 1.09000 * 109.47177 * 59.99981 * 3 2 1 33 33 H 1.08993 * 109.47008 * 300.00164 * 4 2 1 34 34 H 1.09007 * 109.46803 * 60.00005 * 4 2 1 35 35 H 1.09000 * 109.46989 * 179.97438 * 4 2 1 36 36 H 1.00906 * 111.00376 * 92.07350 * 7 5 2 37 37 H 1.08996 * 109.47246 * 292.75252 * 8 7 5 38 38 H 1.09001 * 109.46701 * 52.75436 * 8 7 5 39 39 H 1.08004 * 119.96325 * 359.97438 * 10 9 8 40 40 H 1.07999 * 120.02995 * 180.26643 * 11 10 9 41 41 H 0.96993 * 120.00115 * 180.02562 * 17 16 14 42 42 H 1.08001 * 120.03641 * 179.97438 * 22 12 11 43 43 H 1.07995 * 119.96700 * 179.97438 * 23 22 12 44 44 H 1.09003 * 115.55015 * 27.09636 * 24 5 2 45 45 H 1.09003 * 117.49439 * 0.02562 * 25 24 5 46 46 H 1.08996 * 117.49845 * 145.01980 * 25 24 5 47 47 H 1.08997 * 117.50312 * 214.98244 * 26 24 5 48 48 H 1.09004 * 117.50162 * 359.97438 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 1.6763 -0.2078 2.1392 7 7 1.5509 -2.1064 1.2488 8 6 1.2396 -2.5551 2.6125 9 6 0.5770 -3.9076 2.5574 10 6 -0.8001 -3.9982 2.4666 11 6 -1.4098 -5.2360 2.4102 12 6 -0.6395 -6.3907 2.4566 13 8 -1.2364 -7.6089 2.4078 14 6 -0.4446 -8.6860 2.5836 15 1 0.6246 -8.5616 2.6712 16 6 -1.0030 -9.9533 2.6520 17 7 -0.2305 -11.0041 2.8240 18 14 -2.8523 -10.1684 2.4999 19 1 -3.2128 -10.3573 1.0717 20 1 -3.2780 -11.3584 3.2795 21 1 -3.5363 -8.9605 3.0273 22 6 0.7427 -6.2963 2.5534 23 6 1.3470 -5.0555 2.6027 24 6 3.5701 -0.7207 1.2495 25 6 4.2771 -2.0771 1.2156 26 6 4.2765 -1.2458 2.5009 27 1 -0.3633 0.5855 0.8445 28 1 -0.3633 0.4386 -0.9293 29 1 -0.3633 -1.0242 0.0849 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7488 -1.2493 34 1 1.6766 -0.2073 -2.1393 35 1 3.1300 -0.7209 -1.2495 36 1 2.2154 -2.7245 0.8077 37 1 2.1606 -2.6251 3.1912 38 1 0.5666 -1.8399 3.0855 39 1 -1.3990 -3.0999 2.4358 40 1 -2.4849 -5.3061 2.3350 41 1 -0.6211 -11.8906 2.8715 42 1 1.3444 -7.1924 2.5901 43 1 2.4217 -4.9815 2.6784 44 1 4.0400 0.1053 0.7155 45 1 3.6521 -2.9699 1.1928 46 1 5.2122 -2.1435 0.6597 47 1 5.2112 -0.7656 2.7901 48 1 3.6512 -1.5913 3.3243 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000323936816.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:17 Heat of formation + Delta-G solvation = 20.085968 kcal Electronic energy + Delta-G solvation = -24960.415605 eV Core-core repulsion = 21595.737592 eV Total energy + Delta-G solvation = -3364.678014 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.98707 -39.06595 -36.86650 -35.94536 -33.83318 -32.35098 -30.24749 -29.71975 -27.49033 -27.27027 -26.48548 -25.18911 -23.80621 -22.38888 -22.02270 -20.86473 -20.32347 -18.49800 -17.87701 -17.31583 -16.73067 -15.87253 -15.14867 -14.83240 -14.77758 -14.28774 -14.01969 -13.86975 -13.69861 -13.53259 -13.46299 -12.77353 -12.64154 -12.51349 -12.44007 -12.27079 -12.12315 -11.92592 -11.74340 -11.62651 -11.57530 -11.31232 -11.17543 -10.80725 -10.78083 -10.74542 -10.64230 -10.46072 -10.31205 -10.14757 -10.01159 -9.37723 -8.86384 -8.27847 -8.20620 -7.30052 -6.41186 -4.07840 2.15356 2.20942 3.23162 3.25905 3.40787 3.56656 4.19675 4.24250 4.39763 4.58704 4.65076 4.79811 4.87211 4.88580 4.93577 5.04652 5.11394 5.12725 5.27594 5.39116 5.44719 5.49448 5.51951 5.57472 5.64758 5.69760 5.73041 5.77327 5.81539 5.83482 5.85270 5.94540 6.01981 6.02729 6.08447 6.14742 6.20468 6.36459 6.38017 6.50895 6.59957 6.80921 7.01982 7.17312 7.27275 7.30863 7.51222 7.63434 7.80847 8.04823 8.94293 9.57259 10.66588 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.024112 B = 0.002963 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.974365 B = 9446.236399 C =10022.614094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.051 4.051 3 C -0.144 4.144 4 C -0.138 4.138 5 C 0.125 3.875 6 H 0.075 0.925 7 N -0.678 5.678 8 C 0.112 3.888 9 C -0.171 4.171 10 C -0.055 4.055 11 C -0.193 4.193 12 C 0.161 3.839 13 O -0.219 6.219 14 C -0.389 4.389 15 H 0.106 0.894 16 C 0.063 3.937 17 N -0.881 5.881 18 Si 0.905 3.095 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.259 1.259 22 C -0.221 4.221 23 C -0.069 4.069 24 C -0.175 4.175 25 C -0.186 4.186 26 C -0.185 4.185 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.049 0.951 36 H 0.345 0.655 37 H 0.031 0.969 38 H 0.069 0.931 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.279 0.721 42 H 0.131 0.869 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.101 0.899 46 H 0.094 0.906 47 H 0.090 0.910 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.091 22.513 -3.629 23.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.052 4.052 3 C -0.202 4.202 4 C -0.195 4.195 5 C 0.015 3.985 6 H 0.093 0.907 7 N -0.312 5.312 8 C -0.016 4.016 9 C -0.172 4.172 10 C -0.073 4.073 11 C -0.213 4.213 12 C 0.109 3.891 13 O -0.124 6.124 14 C -0.464 4.464 15 H 0.123 0.877 16 C -0.140 4.140 17 N -0.519 5.519 18 Si 0.731 3.269 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.183 1.183 22 C -0.240 4.240 23 C -0.087 4.087 24 C -0.195 4.195 25 C -0.224 4.224 26 C -0.221 4.221 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.169 0.831 37 H 0.049 0.951 38 H 0.088 0.912 39 H 0.130 0.870 40 H 0.133 0.867 41 H 0.089 0.911 42 H 0.149 0.851 43 H 0.122 0.878 44 H 0.126 0.874 45 H 0.119 0.881 46 H 0.112 0.888 47 H 0.109 0.891 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.215 22.344 -3.781 23.254 hybrid contribution 0.452 -0.490 0.318 0.739 sum 5.667 21.853 -3.463 22.840 Atomic orbital electron populations 1.21767 0.94076 1.03132 1.00217 1.20433 0.96077 0.93825 0.94818 1.21965 1.00786 0.95964 1.01491 1.21809 1.00311 1.01196 0.96177 1.21130 0.89174 0.90406 0.97784 0.90713 1.60709 1.49444 1.02187 1.18887 1.20784 0.97799 0.93965 0.89017 1.19184 0.93630 0.93359 1.11036 1.20451 0.93702 0.95782 0.97410 1.20220 0.99179 0.90448 1.11434 1.19135 0.91243 0.85796 0.92945 1.83573 1.37702 1.11649 1.79441 1.20763 0.92060 0.82648 1.50977 0.87687 1.24464 1.00137 0.93760 0.95648 1.69643 1.36025 0.98728 1.47498 0.86178 0.83719 0.78253 0.78745 1.19880 1.20844 1.18339 1.21228 0.94676 0.98173 1.09928 1.20630 0.98129 0.91919 0.98058 1.23255 0.96361 0.98005 1.01838 1.23110 1.02551 0.95275 1.01455 1.23088 1.02553 1.04434 0.92067 0.93681 0.93684 0.90645 0.92739 0.92778 0.92929 0.91643 0.93504 0.93190 0.83060 0.95139 0.91238 0.86977 0.86662 0.91071 0.85117 0.87797 0.87404 0.88132 0.88786 0.89109 0.88622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 8.39 37.16 0.31 -1.00 16 2 C -0.05 -0.45 0.62 -154.51 -0.10 -0.55 16 3 C -0.14 -1.11 8.23 37.16 0.31 -0.80 16 4 C -0.14 -1.28 8.07 37.16 0.30 -0.98 16 5 C 0.13 1.18 1.70 -67.71 -0.12 1.07 16 6 H 0.07 0.74 7.53 -51.93 -0.39 0.35 16 7 N -0.68 -7.60 4.44 -108.00 -0.48 -8.08 16 8 C 0.11 1.39 5.48 -4.97 -0.03 1.37 16 9 C -0.17 -2.72 5.45 -104.57 -0.57 -3.29 16 10 C -0.05 -0.92 9.69 -39.61 -0.38 -1.30 16 11 C -0.19 -3.83 9.99 -39.39 -0.39 -4.23 16 12 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 13 O -0.22 -5.79 8.59 0.04 0.00 -5.79 16 14 C -0.39 -10.99 9.95 30.89 0.31 -10.68 16 15 H 0.11 3.03 5.44 -52.49 -0.29 2.74 16 16 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16 17 N -0.88 -25.54 13.96 55.48 0.77 -24.76 16 18 Si 0.91 21.77 28.62 -169.99 -4.86 16.91 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 21 H -0.26 -6.25 7.11 56.52 0.40 -5.85 16 22 C -0.22 -4.72 9.17 -39.39 -0.36 -5.08 16 23 C -0.07 -1.21 9.69 -39.61 -0.38 -1.59 16 24 C -0.18 -1.51 4.27 -90.62 -0.39 -1.90 16 25 C -0.19 -1.70 9.57 -26.69 -0.26 -1.96 16 26 C -0.18 -1.63 9.89 -26.70 -0.26 -1.90 16 27 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.87 7.46 -51.93 -0.39 0.49 16 30 H 0.05 0.39 6.14 -51.93 -0.32 0.07 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.70 7.51 -51.93 -0.39 0.31 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.05 0.44 7.17 -51.93 -0.37 0.07 16 36 H 0.35 4.03 5.38 -39.29 -0.21 3.82 16 37 H 0.03 0.36 5.79 -51.93 -0.30 0.06 16 38 H 0.07 0.83 7.82 -51.93 -0.41 0.42 16 39 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 40 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 41 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.13 2.96 5.65 -52.49 -0.30 2.66 16 43 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 44 H 0.11 0.87 6.01 -51.93 -0.31 0.56 16 45 H 0.10 1.03 5.67 -51.93 -0.29 0.73 16 46 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 47 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.10 0.91 6.11 -51.93 -0.32 0.59 16 LS Contribution 372.37 15.07 5.61 5.61 Total: -1.00 -28.20 372.37 -8.97 -37.17 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -7.65 Total: 6.64 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: -2.37 Total: -27.69 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.29 Total: -32.84 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: 0.00 Total: -5.79 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.86 Total: 16.91 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.20 -8.97 -37.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323936816.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.256 kcal (2) G-P(sol) polarization free energy of solvation -28.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds