Wall clock time and date at job start Tue Mar 31 2020 09:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47200 * 2 1 4 4 C 1.53004 * 109.46925 * 240.00122 * 2 1 3 5 5 C 1.52997 * 109.47049 * 120.00147 * 2 1 3 6 6 H 1.08996 * 109.47437 * 300.02614 * 5 2 1 7 7 N 1.46895 * 109.47234 * 60.02839 * 5 2 1 8 8 C 1.46899 * 111.00086 * 216.02656 * 7 5 2 9 9 C 1.50703 * 109.47141 * 172.75208 * 8 7 5 10 10 C 1.38307 * 119.93114 * 269.73033 * 9 8 7 11 11 C 1.38100 * 120.06675 * 179.72665 * 10 9 8 12 12 C 1.38878 * 119.93077 * 0.56940 * 11 10 9 13 13 O 1.35753 * 120.06738 * 179.68317 * 12 11 10 14 14 C 1.34831 * 116.99854 * 186.07501 * 13 12 11 15 15 H 1.08001 * 119.99659 * 354.88337 * 14 13 12 16 16 C 1.38652 * 120.00160 * 174.87711 * 14 13 12 17 17 N 1.31554 * 120.00242 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99714 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.46997 * 89.99820 * 18 16 14 20 20 H 1.48498 * 109.47138 * 209.99766 * 18 16 14 21 21 H 1.48497 * 109.47501 * 330.00048 * 18 16 14 22 22 C 1.38875 * 119.86124 * 359.70274 * 12 11 10 23 23 C 1.38105 * 119.93438 * 359.97438 * 22 12 11 24 24 C 1.53004 * 109.46878 * 180.02562 * 5 2 1 25 25 C 1.53001 * 117.50000 * 241.42412 * 24 5 2 26 26 C 1.52997 * 117.49820 * 172.76573 * 24 5 2 27 27 H 1.08997 * 109.46755 * 304.73488 * 1 2 3 28 28 H 1.08999 * 109.47180 * 64.73370 * 1 2 3 29 29 H 1.09002 * 109.47013 * 184.73790 * 1 2 3 30 30 H 1.08994 * 109.47038 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47344 * 300.00581 * 3 2 1 32 32 H 1.09000 * 109.47177 * 59.99981 * 3 2 1 33 33 H 1.08993 * 109.47008 * 300.00164 * 4 2 1 34 34 H 1.09007 * 109.46803 * 60.00005 * 4 2 1 35 35 H 1.09000 * 109.46989 * 179.97438 * 4 2 1 36 36 H 1.00906 * 111.00376 * 92.07350 * 7 5 2 37 37 H 1.08996 * 109.47246 * 292.75252 * 8 7 5 38 38 H 1.09001 * 109.46701 * 52.75436 * 8 7 5 39 39 H 1.08004 * 119.96325 * 359.97438 * 10 9 8 40 40 H 1.07999 * 120.02995 * 180.26643 * 11 10 9 41 41 H 0.96993 * 120.00115 * 180.02562 * 17 16 14 42 42 H 1.08001 * 120.03641 * 179.97438 * 22 12 11 43 43 H 1.07995 * 119.96700 * 179.97438 * 23 22 12 44 44 H 1.09003 * 115.55015 * 27.09636 * 24 5 2 45 45 H 1.09003 * 117.49439 * 0.02562 * 25 24 5 46 46 H 1.08996 * 117.49845 * 145.01980 * 25 24 5 47 47 H 1.08997 * 117.50312 * 214.98244 * 26 24 5 48 48 H 1.09004 * 117.50162 * 359.97438 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 1.6763 -0.2078 2.1392 7 7 1.5509 -2.1064 1.2488 8 6 1.2396 -2.5551 2.6125 9 6 0.5770 -3.9076 2.5574 10 6 -0.8001 -3.9982 2.4666 11 6 -1.4098 -5.2360 2.4102 12 6 -0.6395 -6.3907 2.4566 13 8 -1.2364 -7.6089 2.4078 14 6 -0.4446 -8.6860 2.5836 15 1 0.6246 -8.5616 2.6712 16 6 -1.0030 -9.9533 2.6520 17 7 -0.2305 -11.0041 2.8240 18 14 -2.8523 -10.1684 2.4999 19 1 -3.2128 -10.3573 1.0717 20 1 -3.2780 -11.3584 3.2795 21 1 -3.5363 -8.9605 3.0273 22 6 0.7427 -6.2963 2.5534 23 6 1.3470 -5.0555 2.6027 24 6 3.5701 -0.7207 1.2495 25 6 4.2771 -2.0771 1.2156 26 6 4.2765 -1.2458 2.5009 27 1 -0.3633 0.5855 0.8445 28 1 -0.3633 0.4386 -0.9293 29 1 -0.3633 -1.0242 0.0849 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7488 -1.2493 34 1 1.6766 -0.2073 -2.1393 35 1 3.1300 -0.7209 -1.2495 36 1 2.2154 -2.7245 0.8077 37 1 2.1606 -2.6251 3.1912 38 1 0.5666 -1.8399 3.0855 39 1 -1.3990 -3.0999 2.4358 40 1 -2.4849 -5.3061 2.3350 41 1 -0.6211 -11.8906 2.8715 42 1 1.3444 -7.1924 2.5901 43 1 2.4217 -4.9815 2.6784 44 1 4.0400 0.1053 0.7155 45 1 3.6521 -2.9699 1.1928 46 1 5.2122 -2.1435 0.6597 47 1 5.2112 -0.7656 2.7901 48 1 3.6512 -1.5913 3.3243 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000323936816.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:16 Heat of formation + Delta-G solvation = 6.286030 kcal Electronic energy + Delta-G solvation = -24961.014015 eV Core-core repulsion = 21595.737592 eV Total energy + Delta-G solvation = -3365.276424 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.03328 -40.50764 -38.46992 -36.65605 -34.96896 -34.34197 -31.80677 -31.07403 -28.18698 -28.03828 -27.80142 -26.72264 -24.92242 -23.64349 -23.19089 -21.78074 -21.57047 -19.83437 -19.26147 -19.05779 -17.63958 -16.77261 -16.53088 -16.22185 -15.93910 -15.71382 -15.55021 -15.27745 -14.91332 -14.59413 -14.38404 -14.27409 -14.17055 -14.04546 -13.34780 -13.25426 -13.16013 -12.99378 -12.89669 -12.53971 -12.50263 -12.40374 -12.36754 -12.27007 -12.12793 -11.95504 -11.68807 -11.46258 -11.31783 -11.23834 -11.04119 -10.89729 -10.74858 -9.78048 -9.18048 -8.93507 -8.50186 -6.22623 0.59336 0.65287 1.31109 1.35613 1.51496 2.27959 2.73246 2.87667 3.03980 3.17140 3.51500 3.69897 3.90769 4.00750 4.06700 4.10710 4.18590 4.20882 4.27527 4.33527 4.45166 4.47768 4.61123 4.71300 4.73945 4.78831 4.81200 4.87499 4.92593 4.99194 5.01657 5.07827 5.09526 5.17967 5.22562 5.26743 5.28153 5.32184 5.39295 5.41669 5.49834 5.60090 5.64146 5.74086 5.78053 5.83556 5.92222 6.21614 6.30676 6.56617 6.84429 7.59804 8.61622 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.024112 B = 0.002963 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.974365 B = 9446.236399 C =10022.614094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.049 4.049 3 C -0.141 4.141 4 C -0.135 4.135 5 C 0.129 3.871 6 H 0.078 0.922 7 N -0.682 5.682 8 C 0.117 3.883 9 C -0.142 4.142 10 C -0.049 4.049 11 C -0.193 4.193 12 C 0.119 3.881 13 O -0.247 6.247 14 C -0.398 4.398 15 H 0.080 0.920 16 C 0.009 3.991 17 N -0.925 5.925 18 Si 0.971 3.029 19 H -0.266 1.266 20 H -0.267 1.267 21 H -0.263 1.263 22 C -0.237 4.237 23 C -0.068 4.068 24 C -0.168 4.168 25 C -0.193 4.193 26 C -0.183 4.183 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.343 0.657 37 H 0.042 0.958 38 H 0.085 0.915 39 H 0.149 0.851 40 H 0.125 0.875 41 H 0.284 0.716 42 H 0.105 0.895 43 H 0.129 0.871 44 H 0.118 0.882 45 H 0.089 0.911 46 H 0.100 0.900 47 H 0.101 0.899 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.905 26.189 -3.756 27.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.049 4.049 3 C -0.199 4.199 4 C -0.192 4.192 5 C 0.019 3.981 6 H 0.096 0.904 7 N -0.317 5.317 8 C -0.011 4.011 9 C -0.144 4.144 10 C -0.067 4.067 11 C -0.212 4.212 12 C 0.070 3.930 13 O -0.155 6.155 14 C -0.475 4.475 15 H 0.097 0.903 16 C -0.189 4.189 17 N -0.566 5.566 18 Si 0.793 3.207 19 H -0.191 1.191 20 H -0.192 1.192 21 H -0.187 1.187 22 C -0.256 4.256 23 C -0.087 4.087 24 C -0.187 4.187 25 C -0.231 4.231 26 C -0.220 4.220 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.167 0.833 37 H 0.060 0.940 38 H 0.103 0.897 39 H 0.166 0.834 40 H 0.143 0.857 41 H 0.094 0.906 42 H 0.123 0.877 43 H 0.147 0.853 44 H 0.136 0.864 45 H 0.107 0.893 46 H 0.118 0.882 47 H 0.119 0.881 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.046 26.071 -3.912 26.842 hybrid contribution 0.669 -1.273 0.335 1.477 sum 5.715 24.798 -3.577 25.698 Atomic orbital electron populations 1.21733 0.94609 1.01970 1.00657 1.20423 0.95587 0.94657 0.94262 1.21928 1.01217 0.94790 1.01938 1.21776 1.00591 1.00194 0.96662 1.21135 0.89747 0.89078 0.98153 0.90426 1.60657 1.49978 1.03189 1.17831 1.20772 0.98341 0.91865 0.90117 1.19673 0.93495 0.94673 1.06511 1.20885 0.94424 0.95788 0.95652 1.20524 0.99764 0.90359 1.10556 1.19671 0.92397 0.85704 0.95215 1.83513 1.37594 1.12154 1.82197 1.20702 0.91434 0.83974 1.51352 0.90267 1.25279 1.04746 0.93306 0.95548 1.69727 1.37901 0.99303 1.49660 0.85211 0.78057 0.78298 0.79121 1.19089 1.19214 1.18688 1.21231 0.94265 0.98975 1.11111 1.20888 0.99639 0.90916 0.97217 1.23216 0.95712 0.97962 1.01810 1.23106 1.02811 0.95068 1.02114 1.23119 1.02948 1.04214 0.91736 0.93152 0.93384 0.92526 0.92039 0.92424 0.92459 0.93408 0.93162 0.92688 0.83292 0.94044 0.89654 0.83367 0.85659 0.90591 0.87710 0.85324 0.86390 0.89326 0.88161 0.88107 0.89170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 8.39 71.98 0.60 -1.63 16 2 C -0.05 -0.73 0.62 -52.18 -0.03 -0.76 16 3 C -0.14 -1.69 8.23 71.98 0.59 -1.10 16 4 C -0.13 -2.21 8.07 71.98 0.58 -1.63 16 5 C 0.13 2.01 1.70 44.92 0.08 2.09 16 6 H 0.08 1.23 7.53 -2.39 -0.02 1.21 16 7 N -0.68 -13.32 4.44 -495.59 -2.20 -15.53 16 8 C 0.12 2.48 5.48 85.56 0.47 2.95 16 9 C -0.14 -4.16 5.45 -19.83 -0.11 -4.26 16 10 C -0.05 -1.51 9.69 22.25 0.22 -1.30 16 11 C -0.19 -7.47 9.99 22.39 0.22 -7.25 16 12 C 0.12 5.65 6.65 22.58 0.15 5.80 16 13 O -0.25 -13.65 8.59 -22.78 -0.20 -13.85 16 14 C -0.40 -23.85 9.95 67.92 0.68 -23.17 16 15 H 0.08 4.97 5.44 -2.91 -0.02 4.96 16 16 C 0.01 0.55 5.49 84.83 0.47 1.01 16 17 N -0.92 -55.95 13.96 21.61 0.30 -55.65 16 18 Si 0.97 46.07 28.62 68.60 1.96 48.04 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.26 -12.43 7.11 99.48 0.71 -11.72 16 22 C -0.24 -10.49 9.17 22.39 0.21 -10.28 16 23 C -0.07 -2.33 9.69 22.25 0.22 -2.11 16 24 C -0.17 -2.37 4.27 -10.79 -0.05 -2.41 16 25 C -0.19 -3.06 9.57 30.62 0.29 -2.77 16 26 C -0.18 -2.69 9.89 30.62 0.30 -2.39 16 27 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 1.17 7.46 -2.39 -0.02 1.15 16 30 H 0.06 0.66 6.14 -2.39 -0.01 0.64 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.05 0.95 7.51 -2.39 -0.02 0.93 16 34 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.05 0.84 7.17 -2.39 -0.02 0.82 16 36 H 0.34 7.21 5.38 -89.69 -0.48 6.73 16 37 H 0.04 0.83 5.79 -2.39 -0.01 0.82 16 38 H 0.09 1.63 7.82 -2.39 -0.02 1.61 16 39 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 40 H 0.13 4.54 8.06 -2.91 -0.02 4.51 16 41 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16 42 H 0.10 5.15 5.65 -2.91 -0.02 5.13 16 43 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 44 H 0.12 1.48 6.01 -2.39 -0.01 1.47 16 45 H 0.09 1.64 5.67 -2.39 -0.01 1.62 16 46 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.09 1.43 6.11 -2.38 -0.01 1.42 16 Total: -1.00 -64.17 372.37 5.22 -58.95 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: 0.47 Total: 27.25 kcal Atomic # 6 Polarization: -54.10 SS G_CDS: 4.88 Total: -49.21 kcal Atomic # 7 Polarization: -69.27 SS G_CDS: -1.90 Total: -71.18 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.20 Total: -13.85 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.96 Total: 48.04 kcal Total: -64.17 5.22 -58.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323936816.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.235 kcal (2) G-P(sol) polarization free energy of solvation -64.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds