Wall clock time and date at job start Tue Mar 31 2020 09:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47180 * 2 1 4 4 C 1.53005 * 109.46939 * 240.00391 * 2 1 3 5 5 C 1.52999 * 109.47512 * 120.00633 * 2 1 3 6 6 H 1.08991 * 109.47176 * 176.25579 * 5 2 1 7 7 N 1.46901 * 109.47022 * 56.25114 * 5 2 1 8 8 C 1.46898 * 110.99736 * 133.56877 * 7 5 2 9 9 C 1.50705 * 109.47120 * 185.65938 * 8 7 5 10 10 C 1.38301 * 119.92634 * 89.99657 * 9 8 7 11 11 C 1.38099 * 120.06425 * 179.97438 * 10 9 8 12 12 C 1.38880 * 119.93422 * 0.02562 * 11 10 9 13 13 O 1.35749 * 120.06671 * 180.02562 * 12 11 10 14 14 C 1.34825 * 117.00591 * 4.84452 * 13 12 11 15 15 H 1.08004 * 119.99814 * 355.42482 * 14 13 12 16 16 C 1.38653 * 120.00423 * 175.42646 * 14 13 12 17 17 N 1.31563 * 119.99752 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00479 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47340 * 89.99223 * 18 16 14 20 20 H 1.48493 * 109.47407 * 210.00049 * 18 16 14 21 21 H 1.48506 * 109.46779 * 329.99654 * 18 16 14 22 22 C 1.38882 * 119.86054 * 0.27961 * 12 11 10 23 23 C 1.38100 * 119.92514 * 359.44346 * 22 12 11 24 24 C 1.53008 * 109.46648 * 296.25501 * 5 2 1 25 25 C 1.52997 * 117.49558 * 252.46084 * 24 5 2 26 26 C 1.53000 * 117.49734 * 183.79864 * 24 5 2 27 27 H 1.08991 * 109.47011 * 299.99511 * 1 2 3 28 28 H 1.09000 * 109.47083 * 60.00110 * 1 2 3 29 29 H 1.09003 * 109.46840 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47396 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47457 * 300.00240 * 3 2 1 32 32 H 1.09000 * 109.47038 * 60.00281 * 3 2 1 33 33 H 1.08998 * 109.47078 * 304.99723 * 4 2 1 34 34 H 1.08993 * 109.47308 * 64.99779 * 4 2 1 35 35 H 1.09002 * 109.46995 * 184.99897 * 4 2 1 36 36 H 1.00901 * 110.99708 * 257.51667 * 7 5 2 37 37 H 1.08996 * 109.47282 * 65.66044 * 8 7 5 38 38 H 1.09003 * 109.47004 * 305.66034 * 8 7 5 39 39 H 1.08002 * 119.97057 * 0.02562 * 10 9 8 40 40 H 1.08007 * 120.03408 * 180.02562 * 11 10 9 41 41 H 0.96996 * 119.99941 * 180.02562 * 17 16 14 42 42 H 1.07993 * 120.03342 * 179.71895 * 22 12 11 43 43 H 1.08006 * 119.96108 * 180.27477 * 23 22 12 44 44 H 1.09004 * 115.54916 * 38.12989 * 24 5 2 45 45 H 1.08998 * 117.50150 * 359.97438 * 25 24 5 46 46 H 1.09001 * 117.49495 * 145.02007 * 25 24 5 47 47 H 1.08993 * 117.49503 * 214.97522 * 26 24 5 48 48 H 1.08996 * 117.49748 * 0.02562 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7214 1.2491 6 1 3.1280 -0.7798 1.2161 7 7 1.4780 -2.0778 1.2951 8 6 2.5176 -3.0682 1.6050 9 6 1.9356 -4.4549 1.5071 10 6 1.9715 -5.1348 0.3034 11 6 1.4394 -6.4058 0.2106 12 6 0.8674 -7.0009 1.3275 13 8 0.3441 -8.2504 1.2394 14 6 0.5006 -8.8985 0.0676 15 1 0.9575 -8.3946 -0.7713 16 6 0.0750 -10.2119 -0.0606 17 7 -0.4812 -10.8258 0.9615 18 14 0.2925 -11.1101 -1.6839 19 1 1.6091 -11.7966 -1.6972 20 1 -0.7906 -12.1133 -1.8435 21 1 0.2318 -10.1341 -2.8016 22 6 0.8272 -6.3130 2.5333 23 6 1.3661 -5.0445 2.6210 24 6 1.6085 0.0522 2.4967 25 6 2.6888 0.8209 3.2601 26 6 2.0991 -0.4619 3.8516 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6054 -1.7197 -1.2953 34 1 1.7516 -0.1583 -2.1370 35 1 3.1264 -0.7994 -1.2057 36 1 0.7182 -2.1320 1.9568 37 1 2.8892 -2.9007 2.6159 38 1 3.3384 -2.9677 0.8949 39 1 2.4168 -4.6718 -0.5648 40 1 1.4681 -6.9366 -0.7296 41 1 -0.7786 -11.7447 0.8720 42 1 0.3790 -6.7712 3.4024 43 1 1.3391 -4.5107 3.5596 44 1 0.6118 0.4916 2.4560 45 1 3.7070 0.7753 2.8739 46 1 2.4026 1.7659 3.7220 47 1 1.4254 -0.3604 4.7023 48 1 2.7297 -1.3510 3.8542 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000323936817.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:20 Heat of formation + Delta-G solvation = 7.205771 kcal Electronic energy + Delta-G solvation = -24760.224487 eV Core-core repulsion = 21394.987946 eV Total energy + Delta-G solvation = -3365.236541 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.67290 -38.89731 -36.72251 -35.86110 -34.02230 -32.22929 -30.13764 -29.59501 -27.31991 -27.27013 -26.22680 -25.22124 -23.34596 -22.53766 -21.91913 -21.16786 -20.36173 -18.64492 -17.94546 -16.90727 -16.29552 -15.80431 -15.00241 -14.67612 -14.57838 -14.44805 -14.06298 -14.01189 -13.54215 -13.44039 -13.27183 -13.03578 -12.81530 -12.63207 -12.21816 -12.16376 -11.88006 -11.72735 -11.58779 -11.58123 -11.50090 -11.24663 -11.17845 -10.80961 -10.72733 -10.67984 -10.59504 -10.46752 -10.40832 -10.39725 -10.03218 -9.29800 -8.80828 -8.19204 -8.11335 -7.14005 -6.42939 -4.01500 2.26435 2.33907 3.14279 3.15145 3.19881 3.54909 3.98712 4.23602 4.39102 4.62626 4.70275 4.84469 4.92395 4.99331 5.09178 5.13398 5.18852 5.27362 5.35205 5.42201 5.46626 5.49202 5.58288 5.61820 5.68669 5.73257 5.80278 5.81800 5.86818 5.88936 5.92756 5.94705 6.03333 6.07976 6.09808 6.23764 6.25660 6.43667 6.46788 6.53102 6.74438 6.95242 7.07742 7.20562 7.27574 7.44505 7.47812 7.58823 7.87423 8.02590 9.03017 9.73820 10.75305 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.023445 B = 0.002851 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.001384 B = 9818.978687 C =10585.363415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.050 4.050 3 C -0.141 4.141 4 C -0.133 4.133 5 C 0.127 3.873 6 H 0.065 0.935 7 N -0.671 5.671 8 C 0.119 3.881 9 C -0.180 4.180 10 C -0.049 4.049 11 C -0.235 4.235 12 C 0.155 3.845 13 O -0.179 6.179 14 C -0.391 4.391 15 H 0.092 0.908 16 C 0.039 3.961 17 N -0.864 5.864 18 Si 0.940 3.060 19 H -0.273 1.273 20 H -0.278 1.278 21 H -0.267 1.267 22 C -0.194 4.194 23 C -0.068 4.068 24 C -0.172 4.172 25 C -0.175 4.175 26 C -0.183 4.183 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.343 0.657 37 H 0.026 0.974 38 H 0.066 0.934 39 H 0.106 0.894 40 H 0.125 0.875 41 H 0.269 0.731 42 H 0.114 0.886 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.091 0.909 46 H 0.090 0.910 47 H 0.093 0.907 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.475 22.244 0.686 22.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.051 4.051 3 C -0.199 4.199 4 C -0.191 4.191 5 C 0.017 3.983 6 H 0.084 0.916 7 N -0.301 5.301 8 C -0.009 4.009 9 C -0.181 4.181 10 C -0.068 4.068 11 C -0.255 4.255 12 C 0.102 3.898 13 O -0.083 6.083 14 C -0.467 4.467 15 H 0.109 0.891 16 C -0.165 4.165 17 N -0.499 5.499 18 Si 0.765 3.235 19 H -0.199 1.199 20 H -0.203 1.203 21 H -0.192 1.192 22 C -0.214 4.214 23 C -0.087 4.087 24 C -0.191 4.191 25 C -0.213 4.213 26 C -0.220 4.220 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.162 0.838 37 H 0.044 0.956 38 H 0.085 0.915 39 H 0.124 0.876 40 H 0.143 0.857 41 H 0.079 0.921 42 H 0.133 0.867 43 H 0.124 0.876 44 H 0.126 0.874 45 H 0.110 0.890 46 H 0.109 0.891 47 H 0.111 0.889 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.293 21.747 0.203 22.383 hybrid contribution 0.250 -0.259 0.172 0.399 sum 5.544 21.488 0.375 22.195 Atomic orbital electron populations 1.21826 0.94552 1.02714 1.00389 1.20439 0.95990 0.93893 0.94790 1.21892 1.00584 0.95995 1.01394 1.21755 1.00108 1.01386 0.95829 1.21205 0.97722 0.87992 0.91397 0.91632 1.60621 1.11162 1.02166 1.56150 1.20719 0.93087 0.89061 0.98077 1.19104 1.08727 0.95876 0.94395 1.20549 0.96836 0.93419 0.95997 1.21162 1.07670 0.97150 0.99500 1.19391 0.90833 0.86444 0.93167 1.83972 1.65544 1.22055 1.36697 1.21327 1.41830 0.95311 0.88230 0.89078 1.25281 0.96347 0.95651 0.99264 1.70042 1.37347 1.12386 1.30148 0.85718 0.78319 0.79236 0.80214 1.19910 1.20280 1.19176 1.20157 1.08732 0.96080 0.96382 1.20461 0.97139 0.94106 0.96998 1.23076 0.99409 1.03682 0.92961 1.22942 0.98273 0.95765 1.04323 1.22994 1.04178 0.98150 0.96697 0.93459 0.93596 0.91127 0.93199 0.93030 0.92604 0.91100 0.93646 0.93703 0.83790 0.95610 0.91514 0.87639 0.85705 0.92066 0.86750 0.87606 0.87420 0.89018 0.89114 0.88895 0.88794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.08 37.16 0.30 -1.04 16 2 C -0.05 -0.47 0.62 -154.51 -0.10 -0.57 16 3 C -0.14 -1.15 8.17 37.16 0.30 -0.85 16 4 C -0.13 -1.38 8.29 37.16 0.31 -1.07 16 5 C 0.13 1.23 1.60 -67.71 -0.11 1.12 16 6 H 0.07 0.68 7.29 -51.93 -0.38 0.30 16 7 N -0.67 -7.76 4.84 -107.99 -0.52 -8.29 16 8 C 0.12 1.53 5.57 -4.97 -0.03 1.51 16 9 C -0.18 -2.98 5.44 -104.58 -0.57 -3.55 16 10 C -0.05 -0.90 9.69 -39.61 -0.38 -1.29 16 11 C -0.24 -5.15 9.17 -39.39 -0.36 -5.51 16 12 C 0.16 3.78 6.65 -39.11 -0.26 3.52 16 13 O -0.18 -5.16 9.76 0.06 0.00 -5.16 16 14 C -0.39 -11.01 9.49 30.89 0.29 -10.72 16 15 H 0.09 2.38 5.20 -52.48 -0.27 2.11 16 16 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 17 N -0.86 -25.54 13.67 55.48 0.76 -24.78 16 18 Si 0.94 20.68 29.55 -169.99 -5.02 15.66 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 22 C -0.19 -4.11 9.99 -39.39 -0.39 -4.50 16 23 C -0.07 -1.20 9.69 -39.61 -0.38 -1.58 16 24 C -0.17 -1.48 3.28 -90.62 -0.30 -1.77 16 25 C -0.18 -1.37 10.01 -26.69 -0.27 -1.64 16 26 C -0.18 -1.58 10.19 -26.69 -0.27 -1.85 16 27 H 0.05 0.42 6.34 -51.93 -0.33 0.09 16 28 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.80 7.50 -51.93 -0.39 0.41 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.44 6.96 -51.93 -0.36 0.08 16 33 H 0.07 0.86 7.86 -51.93 -0.41 0.45 16 34 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.34 4.10 8.24 -39.29 -0.32 3.78 16 37 H 0.03 0.32 6.54 -51.93 -0.34 -0.02 16 38 H 0.07 0.85 7.93 -51.93 -0.41 0.44 16 39 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 40 H 0.13 2.76 5.63 -52.48 -0.30 2.46 16 41 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.11 2.35 8.06 -52.49 -0.42 1.93 16 43 H 0.11 1.56 8.06 -52.48 -0.42 1.13 16 44 H 0.11 0.94 6.33 -51.93 -0.33 0.61 16 45 H 0.09 0.71 8.07 -51.93 -0.42 0.29 16 46 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 48 H 0.09 0.89 6.60 -51.93 -0.34 0.54 16 LS Contribution 380.55 15.07 5.73 5.73 Total: -1.00 -29.21 380.55 -9.33 -38.54 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -7.96 Total: 7.13 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: -2.31 Total: -28.83 kcal Atomic # 7 Polarization: -33.30 SS G_CDS: 0.24 Total: -33.06 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: 0.00 Total: -5.16 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.21 -9.33 -38.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323936817.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.747 kcal (2) G-P(sol) polarization free energy of solvation -29.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds