Wall clock time and date at job start Tue Mar 31 2020 09:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47180 * 2 1 4 4 C 1.53005 * 109.46939 * 240.00391 * 2 1 3 5 5 C 1.52999 * 109.47512 * 120.00633 * 2 1 3 6 6 H 1.08991 * 109.47176 * 176.25579 * 5 2 1 7 7 N 1.46901 * 109.47022 * 56.25114 * 5 2 1 8 8 C 1.46898 * 110.99736 * 133.56877 * 7 5 2 9 9 C 1.50705 * 109.47120 * 185.65938 * 8 7 5 10 10 C 1.38301 * 119.92634 * 89.99657 * 9 8 7 11 11 C 1.38099 * 120.06425 * 179.97438 * 10 9 8 12 12 C 1.38880 * 119.93422 * 0.02562 * 11 10 9 13 13 O 1.35749 * 120.06671 * 180.02562 * 12 11 10 14 14 C 1.34825 * 117.00591 * 4.84452 * 13 12 11 15 15 H 1.08004 * 119.99814 * 355.42482 * 14 13 12 16 16 C 1.38653 * 120.00423 * 175.42646 * 14 13 12 17 17 N 1.31563 * 119.99752 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00479 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47340 * 89.99223 * 18 16 14 20 20 H 1.48493 * 109.47407 * 210.00049 * 18 16 14 21 21 H 1.48506 * 109.46779 * 329.99654 * 18 16 14 22 22 C 1.38882 * 119.86054 * 0.27961 * 12 11 10 23 23 C 1.38100 * 119.92514 * 359.44346 * 22 12 11 24 24 C 1.53008 * 109.46648 * 296.25501 * 5 2 1 25 25 C 1.52997 * 117.49558 * 252.46084 * 24 5 2 26 26 C 1.53000 * 117.49734 * 183.79864 * 24 5 2 27 27 H 1.08991 * 109.47011 * 299.99511 * 1 2 3 28 28 H 1.09000 * 109.47083 * 60.00110 * 1 2 3 29 29 H 1.09003 * 109.46840 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47396 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47457 * 300.00240 * 3 2 1 32 32 H 1.09000 * 109.47038 * 60.00281 * 3 2 1 33 33 H 1.08998 * 109.47078 * 304.99723 * 4 2 1 34 34 H 1.08993 * 109.47308 * 64.99779 * 4 2 1 35 35 H 1.09002 * 109.46995 * 184.99897 * 4 2 1 36 36 H 1.00901 * 110.99708 * 257.51667 * 7 5 2 37 37 H 1.08996 * 109.47282 * 65.66044 * 8 7 5 38 38 H 1.09003 * 109.47004 * 305.66034 * 8 7 5 39 39 H 1.08002 * 119.97057 * 0.02562 * 10 9 8 40 40 H 1.08007 * 120.03408 * 180.02562 * 11 10 9 41 41 H 0.96996 * 119.99941 * 180.02562 * 17 16 14 42 42 H 1.07993 * 120.03342 * 179.71895 * 22 12 11 43 43 H 1.08006 * 119.96108 * 180.27477 * 23 22 12 44 44 H 1.09004 * 115.54916 * 38.12989 * 24 5 2 45 45 H 1.08998 * 117.50150 * 359.97438 * 25 24 5 46 46 H 1.09001 * 117.49495 * 145.02007 * 25 24 5 47 47 H 1.08993 * 117.49503 * 214.97522 * 26 24 5 48 48 H 1.08996 * 117.49748 * 0.02562 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7214 1.2491 6 1 3.1280 -0.7798 1.2161 7 7 1.4780 -2.0778 1.2951 8 6 2.5176 -3.0682 1.6050 9 6 1.9356 -4.4549 1.5071 10 6 1.9715 -5.1348 0.3034 11 6 1.4394 -6.4058 0.2106 12 6 0.8674 -7.0009 1.3275 13 8 0.3441 -8.2504 1.2394 14 6 0.5006 -8.8985 0.0676 15 1 0.9575 -8.3946 -0.7713 16 6 0.0750 -10.2119 -0.0606 17 7 -0.4812 -10.8258 0.9615 18 14 0.2925 -11.1101 -1.6839 19 1 1.6091 -11.7966 -1.6972 20 1 -0.7906 -12.1133 -1.8435 21 1 0.2318 -10.1341 -2.8016 22 6 0.8272 -6.3130 2.5333 23 6 1.3661 -5.0445 2.6210 24 6 1.6085 0.0522 2.4967 25 6 2.6888 0.8209 3.2601 26 6 2.0991 -0.4619 3.8516 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6054 -1.7197 -1.2953 34 1 1.7516 -0.1583 -2.1370 35 1 3.1264 -0.7994 -1.2057 36 1 0.7182 -2.1320 1.9568 37 1 2.8892 -2.9007 2.6159 38 1 3.3384 -2.9677 0.8949 39 1 2.4168 -4.6718 -0.5648 40 1 1.4681 -6.9366 -0.7296 41 1 -0.7786 -11.7447 0.8720 42 1 0.3790 -6.7712 3.4024 43 1 1.3391 -4.5107 3.5596 44 1 0.6118 0.4916 2.4560 45 1 3.7070 0.7753 2.8739 46 1 2.4026 1.7659 3.7220 47 1 1.4254 -0.3604 4.7023 48 1 2.7297 -1.3510 3.8542 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000323936817.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:19 Heat of formation + Delta-G solvation = -8.032910 kcal Electronic energy + Delta-G solvation = -24760.885286 eV Core-core repulsion = 21394.987946 eV Total energy + Delta-G solvation = -3365.897340 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.84044 -40.26077 -38.38358 -36.54927 -35.18203 -34.18682 -31.76340 -30.99651 -28.15383 -27.97534 -27.67508 -26.78080 -24.51104 -23.58688 -23.14309 -22.05957 -21.71515 -19.82090 -19.43674 -18.78677 -17.12718 -16.71444 -16.39231 -16.15034 -15.96402 -15.69013 -15.45312 -15.16474 -14.94374 -14.71717 -14.42618 -14.19530 -14.07763 -13.87211 -13.55689 -13.09403 -13.02026 -12.89593 -12.83609 -12.48721 -12.41353 -12.33903 -12.28822 -12.23522 -12.13813 -12.10956 -11.72705 -11.44914 -11.23353 -11.14342 -11.13696 -10.82953 -10.75301 -9.73930 -9.11659 -8.84935 -8.46578 -6.14352 0.63915 0.72315 1.34873 1.44248 1.52361 2.18330 2.77523 2.92077 3.16334 3.52678 3.56410 3.68373 3.94547 4.07757 4.12004 4.19469 4.20978 4.23041 4.30474 4.35234 4.46039 4.51936 4.63565 4.70497 4.76294 4.84026 4.86543 4.89170 4.92787 4.98046 5.06907 5.08532 5.13626 5.17593 5.19936 5.26795 5.28601 5.34276 5.34831 5.37448 5.50049 5.60772 5.64894 5.72263 5.75113 5.87090 6.04567 6.22703 6.32849 6.62119 6.98498 7.80308 8.76967 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.023445 B = 0.002851 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.001384 B = 9818.978687 C =10585.363415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.049 4.049 3 C -0.136 4.136 4 C -0.132 4.132 5 C 0.133 3.867 6 H 0.065 0.935 7 N -0.677 5.677 8 C 0.125 3.875 9 C -0.150 4.150 10 C -0.050 4.050 11 C -0.244 4.244 12 C 0.113 3.887 13 O -0.234 6.234 14 C -0.413 4.413 15 H 0.100 0.900 16 C -0.024 4.024 17 N -0.922 5.922 18 Si 1.018 2.982 19 H -0.263 1.263 20 H -0.271 1.271 21 H -0.253 1.253 22 C -0.205 4.205 23 C -0.059 4.059 24 C -0.173 4.173 25 C -0.166 4.166 26 C -0.188 4.188 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.343 0.657 37 H 0.044 0.956 38 H 0.076 0.924 39 H 0.132 0.868 40 H 0.115 0.885 41 H 0.272 0.728 42 H 0.110 0.890 43 H 0.145 0.855 44 H 0.109 0.891 45 H 0.094 0.906 46 H 0.101 0.899 47 H 0.096 0.904 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.989 25.526 0.258 26.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.050 4.050 3 C -0.194 4.194 4 C -0.189 4.189 5 C 0.023 3.977 6 H 0.084 0.916 7 N -0.307 5.307 8 C -0.004 4.004 9 C -0.152 4.152 10 C -0.069 4.069 11 C -0.264 4.264 12 C 0.063 3.937 13 O -0.141 6.141 14 C -0.489 4.489 15 H 0.117 0.883 16 C -0.221 4.221 17 N -0.561 5.561 18 Si 0.837 3.163 19 H -0.188 1.188 20 H -0.195 1.195 21 H -0.177 1.177 22 C -0.225 4.225 23 C -0.077 4.077 24 C -0.192 4.192 25 C -0.203 4.203 26 C -0.225 4.225 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.162 0.838 37 H 0.062 0.938 38 H 0.094 0.906 39 H 0.150 0.850 40 H 0.132 0.868 41 H 0.081 0.919 42 H 0.129 0.871 43 H 0.162 0.838 44 H 0.127 0.873 45 H 0.113 0.887 46 H 0.119 0.881 47 H 0.115 0.885 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.830 25.099 -0.219 26.013 hybrid contribution -0.118 -0.902 0.412 0.999 sum 6.712 24.197 0.194 25.111 Atomic orbital electron populations 1.21786 0.94863 1.01586 1.00945 1.20434 0.95667 0.94663 0.94196 1.21839 1.00794 0.94895 1.01860 1.21729 1.00143 1.00397 0.96630 1.21160 0.97524 0.86891 0.92110 0.91641 1.60537 1.10821 1.03070 1.56232 1.20679 0.93296 0.86835 0.99545 1.19616 1.05241 0.97256 0.93045 1.20864 0.96092 0.92056 0.97841 1.21241 1.08116 0.98558 0.98456 1.19935 0.92647 0.85912 0.95224 1.83934 1.68532 1.24281 1.37360 1.21807 1.42247 0.96089 0.88726 0.88264 1.26579 0.95744 0.96209 1.03538 1.70186 1.39873 1.13009 1.32993 0.84597 0.78676 0.77853 0.75162 1.18784 1.19527 1.17710 1.20425 1.09191 0.97460 0.95378 1.20859 0.95350 0.92548 0.98978 1.22962 0.99789 1.04065 0.92395 1.22998 0.98073 0.95868 1.03399 1.23008 1.04351 0.98413 0.96719 0.92625 0.93390 0.93026 0.92805 0.92748 0.92014 0.93134 0.93207 0.93399 0.83840 0.93821 0.90608 0.84982 0.86766 0.91866 0.87145 0.83775 0.87346 0.88725 0.88095 0.88514 0.89390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 8.08 71.98 0.58 -1.75 16 2 C -0.05 -0.79 0.62 -52.18 -0.03 -0.82 16 3 C -0.14 -1.80 8.17 71.98 0.59 -1.22 16 4 C -0.13 -2.42 8.29 71.98 0.60 -1.83 16 5 C 0.13 2.14 1.60 44.92 0.07 2.22 16 6 H 0.07 1.10 7.29 -2.39 -0.02 1.08 16 7 N -0.68 -13.59 4.84 -495.57 -2.40 -15.99 16 8 C 0.12 2.75 5.57 85.56 0.48 3.23 16 9 C -0.15 -4.59 5.44 -19.83 -0.11 -4.70 16 10 C -0.05 -1.76 9.69 22.25 0.22 -1.54 16 11 C -0.24 -10.90 9.17 22.39 0.21 -10.70 16 12 C 0.11 5.73 6.65 22.58 0.15 5.88 16 13 O -0.23 -14.39 9.76 -22.69 -0.22 -14.62 16 14 C -0.41 -24.52 9.49 67.92 0.64 -23.87 16 15 H 0.10 5.45 5.20 -2.91 -0.02 5.43 16 16 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 17 N -0.92 -57.46 13.67 21.61 0.30 -57.17 16 18 Si 1.02 43.58 29.55 68.60 2.03 45.61 16 19 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 20 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 21 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 22 C -0.21 -8.81 9.99 22.39 0.22 -8.59 16 23 C -0.06 -1.94 9.69 22.25 0.22 -1.72 16 24 C -0.17 -2.40 3.28 -10.79 -0.04 -2.43 16 25 C -0.17 -2.00 10.01 30.62 0.31 -1.70 16 26 C -0.19 -2.61 10.19 30.62 0.31 -2.30 16 27 H 0.05 0.86 6.34 -2.39 -0.02 0.85 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.05 1.09 7.50 -2.39 -0.02 1.08 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.76 6.96 -2.39 -0.02 0.74 16 33 H 0.05 1.13 7.86 -2.39 -0.02 1.12 16 34 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.34 7.13 8.24 -89.69 -0.74 6.39 16 37 H 0.04 0.86 6.54 -2.39 -0.02 0.84 16 38 H 0.08 1.62 7.93 -2.39 -0.02 1.60 16 39 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 40 H 0.11 5.24 5.63 -2.91 -0.02 5.22 16 41 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 42 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 43 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 44 H 0.11 1.53 6.33 -2.39 -0.02 1.52 16 45 H 0.09 1.12 8.07 -2.39 -0.02 1.10 16 46 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.09 1.34 6.60 -2.39 -0.02 1.32 16 Total: -1.00 -68.10 380.55 4.78 -63.32 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: 0.20 Total: 31.57 kcal Atomic # 6 Polarization: -57.60 SS G_CDS: 4.88 Total: -52.72 kcal Atomic # 7 Polarization: -71.05 SS G_CDS: -2.10 Total: -73.16 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.22 Total: -14.62 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -68.10 4.78 -63.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323936817.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.284 kcal (2) G-P(sol) polarization free energy of solvation -68.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds