Wall clock time and date at job start Tue Mar 31 2020 08:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 110.29458 * 2 1 4 4 C 1.54387 * 110.32523 * 237.76362 * 2 1 3 5 5 N 1.48557 * 104.59473 * 264.96261 * 4 2 1 6 6 C 1.46905 * 110.99853 * 200.95689 * 5 4 2 7 7 C 1.53001 * 109.47178 * 189.99601 * 6 5 4 8 8 O 1.42901 * 109.47064 * 64.99909 * 7 6 5 9 9 C 1.42893 * 114.00058 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.47170 * 180.02562 * 9 8 7 11 11 H 1.08005 * 120.00011 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99776 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99603 * 180.02562 * 12 10 9 14 14 Si 1.86793 * 120.00489 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47267 * 89.99707 * 14 12 10 16 16 H 1.48501 * 109.47144 * 210.00047 * 14 12 10 17 17 H 1.48499 * 109.46857 * 330.00164 * 14 12 10 18 18 C 1.48565 * 104.22131 * 320.51326 * 5 4 2 19 19 C 1.54255 * 110.32630 * 122.13148 * 2 1 3 20 20 H 1.09004 * 110.32340 * 359.89407 * 19 2 1 21 21 C 1.50698 * 110.32527 * 237.79250 * 19 2 1 22 22 C 1.38236 * 120.00168 * 109.50697 * 21 19 2 23 23 C 1.38236 * 119.99941 * 179.72648 * 22 21 19 24 24 C 1.38240 * 119.99829 * 0.27970 * 23 22 21 25 25 C 1.38234 * 120.00222 * 359.97073 * 24 23 22 26 26 C 1.38233 * 119.99991 * 359.96671 * 25 24 23 27 27 H 1.08999 * 109.47041 * 297.87202 * 1 2 3 28 28 H 1.08999 * 109.47090 * 57.87031 * 1 2 3 29 29 H 1.09001 * 109.47309 * 177.87239 * 1 2 3 30 30 H 1.08997 * 109.47438 * 189.08725 * 3 2 1 31 31 H 1.08997 * 109.46638 * 309.09232 * 3 2 1 32 32 H 1.09004 * 109.46723 * 69.08295 * 3 2 1 33 33 H 1.08999 * 110.40753 * 23.73593 * 4 2 1 34 34 H 1.08992 * 110.41548 * 146.17655 * 4 2 1 35 35 H 1.08996 * 109.46905 * 310.00184 * 6 5 4 36 36 H 1.08998 * 109.47016 * 69.99894 * 6 5 4 37 37 H 1.08997 * 109.47233 * 185.00207 * 7 6 5 38 38 H 1.09001 * 109.46880 * 305.00442 * 7 6 5 39 39 H 1.09004 * 109.47069 * 299.99741 * 9 8 7 40 40 H 1.08994 * 109.47494 * 60.00188 * 9 8 7 41 41 H 0.97002 * 120.00258 * 180.02562 * 13 12 10 42 42 H 1.09007 * 110.40898 * 280.70596 * 18 5 4 43 43 H 1.08997 * 110.41049 * 158.26550 * 18 5 4 44 44 H 1.07993 * 120.00511 * 0.02562 * 22 21 19 45 45 H 1.07999 * 120.00355 * 180.25446 * 23 22 21 46 46 H 1.08002 * 119.99487 * 179.97438 * 24 23 22 47 47 H 1.07999 * 119.99904 * 179.97438 * 25 24 23 48 48 H 1.07994 * 120.00018 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0606 1.4350 0.0000 4 6 2.0662 -0.7722 -1.2246 5 7 2.3146 -2.1474 -0.7205 6 6 3.2648 -2.8611 -1.5842 7 6 3.3062 -4.3378 -1.1860 8 8 2.0353 -4.9371 -1.4460 9 6 1.9662 -6.3235 -1.1068 10 6 0.5894 -6.8495 -1.4213 11 1 -0.1580 -6.1910 -1.8388 12 6 0.2842 -8.1717 -1.1769 13 7 -0.9172 -8.6309 -1.4518 14 14 1.5773 -9.3112 -0.4568 15 1 1.4972 -9.2768 1.0257 16 1 1.3368 -10.6968 -0.9336 17 1 2.9261 -8.8656 -0.8900 18 6 2.8805 -1.9417 0.6376 19 6 2.0658 -0.7693 1.2249 20 1 1.2388 -1.1454 1.8273 21 6 2.9539 0.1213 2.0550 22 6 2.5267 0.5626 3.2934 23 6 3.3438 1.3750 4.0572 24 6 4.5856 1.7507 3.5801 25 6 5.0106 1.3137 2.3395 26 6 4.1942 0.5003 1.5762 27 1 -0.3633 0.4804 0.9084 28 1 -0.3633 0.5465 -0.8703 29 1 -0.3634 -1.0270 -0.0382 30 1 3.1384 1.4239 -0.1623 31 1 1.5788 2.0005 -0.7976 32 1 1.8425 1.9030 0.9600 33 1 1.3213 -0.7878 -2.0202 34 1 2.9940 -0.3243 -1.5801 35 1 2.9476 -2.7737 -2.6233 36 1 4.2575 -2.4259 -1.4696 37 1 4.0745 -4.8491 -1.7659 38 1 3.5368 -4.4213 -0.1239 39 1 2.7067 -6.8763 -1.6849 40 1 2.1688 -6.4479 -0.0431 41 1 -1.1321 -9.5610 -1.2796 42 1 3.9360 -1.6767 0.5735 43 1 2.7488 -2.8377 1.2441 44 1 1.5568 0.2688 3.6664 45 1 3.0118 1.7164 5.0266 46 1 5.2237 2.3858 4.1767 47 1 5.9807 1.6076 1.9666 48 1 4.5264 0.1585 0.6071 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339043853.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:24 Heat of formation + Delta-G solvation = -18.043167 kcal Electronic energy + Delta-G solvation = -25155.540675 eV Core-core repulsion = 21789.209258 eV Total energy + Delta-G solvation = -3366.331417 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.71565 -38.48485 -36.83895 -34.49183 -32.54068 -32.13044 -31.14989 -29.81885 -28.28485 -27.31169 -27.12125 -24.91257 -23.43971 -22.60254 -21.77003 -21.29001 -20.55656 -18.85458 -17.02602 -16.77744 -16.09634 -15.70624 -15.57819 -15.09811 -14.82141 -14.66646 -14.19496 -14.09256 -13.98098 -13.72280 -13.38680 -13.15739 -13.07237 -12.74709 -12.47654 -12.37195 -12.14869 -11.91621 -11.73887 -11.59890 -11.39625 -11.24413 -10.95977 -10.88695 -10.80448 -10.63383 -10.59731 -10.56954 -10.25606 -9.80935 -9.10424 -9.07151 -8.78203 -8.76665 -8.38802 -8.22286 -6.06010 -4.04011 1.17314 1.21547 3.28009 3.34626 3.36426 3.58025 4.01392 4.40126 4.41361 4.56827 4.62110 4.75488 4.75843 4.80395 4.90807 4.99409 5.18532 5.23991 5.25339 5.31339 5.32741 5.39212 5.46663 5.52400 5.60210 5.66427 5.69020 5.77713 5.81366 5.85146 5.85646 5.90808 5.93443 6.03379 6.08652 6.13060 6.18105 6.22054 6.28199 6.32460 6.38841 6.52057 6.67094 6.81423 6.99385 7.06756 7.19008 7.66735 8.12333 8.75493 9.07491 9.53998 11.07244 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.019329 B = 0.003087 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.259396 B = 9067.663866 C = 9408.459588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.056 4.056 3 C -0.140 4.140 4 C 0.040 3.960 5 N -0.490 5.490 6 C 0.051 3.949 7 C 0.066 3.934 8 O -0.364 6.364 9 C 0.168 3.832 10 C -0.513 4.513 11 H 0.083 0.917 12 C 0.071 3.929 13 N -0.897 5.897 14 Si 0.875 3.125 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.267 1.267 18 C 0.038 3.962 19 C -0.049 4.049 20 H 0.091 0.909 21 C -0.059 4.059 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.129 4.129 25 C -0.121 4.121 26 C -0.113 4.113 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.039 0.961 35 H 0.082 0.918 36 H 0.041 0.959 37 H 0.039 0.961 38 H 0.036 0.964 39 H -0.001 1.001 40 H -0.004 1.004 41 H 0.265 0.735 42 H 0.045 0.955 43 H 0.084 0.916 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.118 0.882 47 H 0.118 0.882 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.575 23.381 7.709 27.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.057 4.057 3 C -0.198 4.198 4 C -0.087 4.087 5 N -0.214 5.214 6 C -0.078 4.078 7 C -0.012 4.012 8 O -0.283 6.283 9 C 0.093 3.907 10 C -0.551 4.551 11 H 0.101 0.899 12 C -0.131 4.131 13 N -0.536 5.536 14 Si 0.702 3.298 15 H -0.200 1.200 16 H -0.209 1.209 17 H -0.192 1.192 18 C -0.090 4.090 19 C -0.068 4.068 20 H 0.109 0.891 21 C -0.059 4.059 22 C -0.136 4.136 23 C -0.137 4.137 24 C -0.147 4.147 25 C -0.139 4.139 26 C -0.131 4.131 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.057 0.943 35 H 0.101 0.899 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.017 0.983 40 H 0.014 0.986 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.102 0.898 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.136 0.864 47 H 0.136 0.864 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 10.811 22.960 7.620 26.498 hybrid contribution 1.688 -0.463 0.513 1.824 sum 12.499 22.498 8.133 26.991 Atomic orbital electron populations 1.21844 0.93253 1.02981 1.01167 1.21243 0.96405 0.94461 0.93577 1.22108 1.00818 0.95168 1.01673 1.23271 0.99629 0.88712 0.97138 1.65377 1.40792 1.13826 1.01358 1.22294 0.93316 0.93783 0.98379 1.22254 0.88407 0.92199 0.98389 1.88005 1.29372 1.25347 1.85541 1.20572 0.98183 0.78500 0.93489 1.20905 0.96056 0.95666 1.42506 0.89910 1.24769 0.95398 0.97563 0.95327 1.69881 1.19646 1.15623 1.48453 0.86860 0.82522 0.80510 0.79894 1.19988 1.20860 1.19180 1.23307 0.96082 0.97966 0.91677 1.21073 0.96929 0.93524 0.95302 0.89098 1.19775 0.94508 0.97191 0.94416 1.21080 0.99927 0.98309 0.94246 1.21120 0.94551 0.98340 0.99693 1.21098 0.96559 1.00714 0.96323 1.21099 0.99540 0.98361 0.94896 1.21000 0.94081 0.98384 0.99638 0.92984 0.92707 0.91127 0.92322 0.92928 0.92289 0.89818 0.94290 0.89937 0.94076 0.94293 0.94608 0.98317 0.98650 0.92464 0.93719 0.89811 0.86062 0.86273 0.86442 0.86368 0.86360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.22 37.16 0.31 -1.18 16 2 C -0.06 -0.61 1.02 -153.13 -0.16 -0.76 16 3 C -0.14 -1.31 7.20 37.16 0.27 -1.05 16 4 C 0.04 0.49 5.55 -2.18 -0.01 0.48 16 5 N -0.49 -7.26 5.29 -229.97 -1.22 -8.48 16 6 C 0.05 0.74 5.22 -3.82 -0.02 0.72 16 7 C 0.07 1.18 6.13 37.16 0.23 1.41 16 8 O -0.36 -8.74 10.27 -35.23 -0.36 -9.11 16 9 C 0.17 4.40 4.76 36.01 0.17 4.57 16 10 C -0.51 -15.64 9.99 -34.44 -0.34 -15.98 16 11 H 0.08 2.76 8.06 -52.48 -0.42 2.34 16 12 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 13 N -0.90 -28.16 13.96 55.43 0.77 -27.39 16 14 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 15 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 18 C 0.04 0.49 5.32 -2.18 -0.01 0.48 16 19 C -0.05 -0.56 2.93 -90.40 -0.26 -0.82 16 20 H 0.09 1.09 7.54 -51.93 -0.39 0.69 16 21 C -0.06 -0.60 3.23 -104.62 -0.34 -0.94 16 22 C -0.12 -1.13 9.58 -39.58 -0.38 -1.51 16 23 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 24 C -0.13 -1.08 10.05 -39.58 -0.40 -1.48 16 25 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 26 C -0.11 -1.09 6.48 -39.58 -0.26 -1.34 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.54 5.61 -51.93 -0.29 0.25 16 31 H 0.05 0.46 8.13 -51.93 -0.42 0.03 16 32 H 0.06 0.57 7.09 -51.93 -0.37 0.20 16 33 H 0.08 1.06 7.86 -51.93 -0.41 0.65 16 34 H 0.04 0.42 7.58 -51.93 -0.39 0.03 16 35 H 0.08 1.23 8.08 -51.93 -0.42 0.81 16 36 H 0.04 0.50 7.77 -51.93 -0.40 0.10 16 37 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.04 0.62 7.28 -51.93 -0.38 0.25 16 39 H 0.00 -0.02 7.20 -51.93 -0.37 -0.39 16 40 H 0.00 -0.11 7.57 -51.93 -0.39 -0.50 16 41 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 42 H 0.04 0.53 5.70 -51.93 -0.30 0.23 16 43 H 0.08 1.22 7.73 -51.93 -0.40 0.82 16 44 H 0.12 1.05 8.01 -52.49 -0.42 0.63 16 45 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 46 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 47 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 48 H 0.12 1.10 6.53 -52.49 -0.34 0.76 16 LS Contribution 371.74 15.07 5.60 5.60 Total: -1.00 -32.72 371.74 -10.22 -42.95 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -8.25 Total: -2.48 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -2.10 Total: -18.26 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: -0.44 Total: -35.87 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.36 Total: -9.11 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.72 -10.22 -42.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339043853.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.902 kcal (2) G-P(sol) polarization free energy of solvation -32.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds