Wall clock time and date at job start Tue Mar 31 2020 08:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 110.29458 * 2 1 4 4 C 1.54387 * 110.32523 * 237.76362 * 2 1 3 5 5 N 1.48557 * 104.59473 * 264.96261 * 4 2 1 6 6 C 1.46905 * 110.99853 * 200.95689 * 5 4 2 7 7 C 1.53001 * 109.47178 * 189.99601 * 6 5 4 8 8 O 1.42901 * 109.47064 * 64.99909 * 7 6 5 9 9 C 1.42893 * 114.00058 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.47170 * 180.02562 * 9 8 7 11 11 H 1.08005 * 120.00011 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99776 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99603 * 180.02562 * 12 10 9 14 14 Si 1.86793 * 120.00489 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47267 * 89.99707 * 14 12 10 16 16 H 1.48501 * 109.47144 * 210.00047 * 14 12 10 17 17 H 1.48499 * 109.46857 * 330.00164 * 14 12 10 18 18 C 1.48565 * 104.22131 * 320.51326 * 5 4 2 19 19 C 1.54255 * 110.32630 * 122.13148 * 2 1 3 20 20 H 1.09004 * 110.32340 * 359.89407 * 19 2 1 21 21 C 1.50698 * 110.32527 * 237.79250 * 19 2 1 22 22 C 1.38236 * 120.00168 * 109.50697 * 21 19 2 23 23 C 1.38236 * 119.99941 * 179.72648 * 22 21 19 24 24 C 1.38240 * 119.99829 * 0.27970 * 23 22 21 25 25 C 1.38234 * 120.00222 * 359.97073 * 24 23 22 26 26 C 1.38233 * 119.99991 * 359.96671 * 25 24 23 27 27 H 1.08999 * 109.47041 * 297.87202 * 1 2 3 28 28 H 1.08999 * 109.47090 * 57.87031 * 1 2 3 29 29 H 1.09001 * 109.47309 * 177.87239 * 1 2 3 30 30 H 1.08997 * 109.47438 * 189.08725 * 3 2 1 31 31 H 1.08997 * 109.46638 * 309.09232 * 3 2 1 32 32 H 1.09004 * 109.46723 * 69.08295 * 3 2 1 33 33 H 1.08999 * 110.40753 * 23.73593 * 4 2 1 34 34 H 1.08992 * 110.41548 * 146.17655 * 4 2 1 35 35 H 1.08996 * 109.46905 * 310.00184 * 6 5 4 36 36 H 1.08998 * 109.47016 * 69.99894 * 6 5 4 37 37 H 1.08997 * 109.47233 * 185.00207 * 7 6 5 38 38 H 1.09001 * 109.46880 * 305.00442 * 7 6 5 39 39 H 1.09004 * 109.47069 * 299.99741 * 9 8 7 40 40 H 1.08994 * 109.47494 * 60.00188 * 9 8 7 41 41 H 0.97002 * 120.00258 * 180.02562 * 13 12 10 42 42 H 1.09007 * 110.40898 * 280.70596 * 18 5 4 43 43 H 1.08997 * 110.41049 * 158.26550 * 18 5 4 44 44 H 1.07993 * 120.00511 * 0.02562 * 22 21 19 45 45 H 1.07999 * 120.00355 * 180.25446 * 23 22 21 46 46 H 1.08002 * 119.99487 * 179.97438 * 24 23 22 47 47 H 1.07999 * 119.99904 * 179.97438 * 25 24 23 48 48 H 1.07994 * 120.00018 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0606 1.4350 0.0000 4 6 2.0662 -0.7722 -1.2246 5 7 2.3146 -2.1474 -0.7205 6 6 3.2648 -2.8611 -1.5842 7 6 3.3062 -4.3378 -1.1860 8 8 2.0353 -4.9371 -1.4460 9 6 1.9662 -6.3235 -1.1068 10 6 0.5894 -6.8495 -1.4213 11 1 -0.1580 -6.1910 -1.8388 12 6 0.2842 -8.1717 -1.1769 13 7 -0.9172 -8.6309 -1.4518 14 14 1.5773 -9.3112 -0.4568 15 1 1.4972 -9.2768 1.0257 16 1 1.3368 -10.6968 -0.9336 17 1 2.9261 -8.8656 -0.8900 18 6 2.8805 -1.9417 0.6376 19 6 2.0658 -0.7693 1.2249 20 1 1.2388 -1.1454 1.8273 21 6 2.9539 0.1213 2.0550 22 6 2.5267 0.5626 3.2934 23 6 3.3438 1.3750 4.0572 24 6 4.5856 1.7507 3.5801 25 6 5.0106 1.3137 2.3395 26 6 4.1942 0.5003 1.5762 27 1 -0.3633 0.4804 0.9084 28 1 -0.3633 0.5465 -0.8703 29 1 -0.3634 -1.0270 -0.0382 30 1 3.1384 1.4239 -0.1623 31 1 1.5788 2.0005 -0.7976 32 1 1.8425 1.9030 0.9600 33 1 1.3213 -0.7878 -2.0202 34 1 2.9940 -0.3243 -1.5801 35 1 2.9476 -2.7737 -2.6233 36 1 4.2575 -2.4259 -1.4696 37 1 4.0745 -4.8491 -1.7659 38 1 3.5368 -4.4213 -0.1239 39 1 2.7067 -6.8763 -1.6849 40 1 2.1688 -6.4479 -0.0431 41 1 -1.1321 -9.5610 -1.2796 42 1 3.9360 -1.6767 0.5735 43 1 2.7488 -2.8377 1.2441 44 1 1.5568 0.2688 3.6664 45 1 3.0118 1.7164 5.0266 46 1 5.2237 2.3858 4.1767 47 1 5.9807 1.6076 1.9666 48 1 4.5264 0.1585 0.6071 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339043853.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:24 Heat of formation + Delta-G solvation = -38.297573 kcal Electronic energy + Delta-G solvation = -25156.418972 eV Core-core repulsion = 21789.209258 eV Total energy + Delta-G solvation = -3367.209714 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.57224 -39.37036 -38.46320 -35.66902 -34.75162 -32.92239 -31.81076 -31.23239 -29.69121 -28.79138 -27.95706 -25.92156 -24.44017 -23.93635 -23.33702 -22.20744 -21.61148 -19.74799 -19.01104 -17.75820 -17.47595 -17.13105 -16.50378 -16.40969 -16.11581 -15.81744 -15.51780 -15.23184 -14.90114 -14.73022 -14.50995 -14.33165 -14.19530 -14.06542 -13.74842 -13.50137 -13.20040 -13.09890 -12.96232 -12.75933 -12.61155 -12.49948 -12.28035 -12.04333 -12.01609 -11.81346 -11.68503 -11.60532 -11.43202 -11.39095 -11.25171 -10.91853 -10.29642 -9.74159 -9.49505 -9.27114 -8.36919 -6.44336 0.49008 0.54822 1.31917 1.35436 1.46331 2.29244 2.89113 2.95313 2.98191 3.15102 3.50833 3.70496 3.78795 4.06103 4.11069 4.16961 4.21777 4.24403 4.30919 4.33303 4.40757 4.43895 4.50954 4.53288 4.62228 4.64239 4.70266 4.77596 4.81318 4.81587 4.87291 4.90860 5.01775 5.02695 5.09726 5.11724 5.13013 5.21958 5.29699 5.33942 5.44984 5.46823 5.62386 5.67789 5.78340 5.92949 5.98734 6.13576 6.17105 6.59914 6.81495 7.20299 8.80549 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.019329 B = 0.003087 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.259396 B = 9067.663866 C = 9408.459588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.052 4.052 3 C -0.131 4.131 4 C 0.043 3.957 5 N -0.524 5.524 6 C 0.056 3.944 7 C 0.057 3.943 8 O -0.393 6.393 9 C 0.180 3.820 10 C -0.542 4.542 11 H 0.028 0.972 12 C 0.012 3.988 13 N -0.943 5.943 14 Si 0.957 3.043 15 H -0.260 1.260 16 H -0.272 1.272 17 H -0.246 1.246 18 C 0.041 3.959 19 C -0.044 4.044 20 H 0.075 0.925 21 C -0.068 4.068 22 C -0.131 4.131 23 C -0.124 4.124 24 C -0.132 4.132 25 C -0.124 4.124 26 C -0.120 4.120 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.040 0.960 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.042 0.958 39 H 0.010 0.990 40 H 0.005 0.995 41 H 0.273 0.727 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.122 0.878 45 H 0.137 0.863 46 H 0.139 0.861 47 H 0.138 0.862 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.712 24.405 8.854 29.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.052 4.052 3 C -0.188 4.188 4 C -0.084 4.084 5 N -0.248 5.248 6 C -0.072 4.072 7 C -0.021 4.021 8 O -0.312 6.312 9 C 0.104 3.896 10 C -0.580 4.580 11 H 0.046 0.954 12 C -0.186 4.186 13 N -0.583 5.583 14 Si 0.778 3.222 15 H -0.185 1.185 16 H -0.196 1.196 17 H -0.169 1.169 18 C -0.086 4.086 19 C -0.063 4.063 20 H 0.093 0.907 21 C -0.068 4.068 22 C -0.149 4.149 23 C -0.142 4.142 24 C -0.149 4.149 25 C -0.142 4.142 26 C -0.138 4.138 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.028 0.972 40 H 0.022 0.978 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.140 0.860 45 H 0.155 0.845 46 H 0.157 0.843 47 H 0.156 0.844 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 13.952 24.016 8.760 29.123 hybrid contribution 0.632 -0.693 0.144 0.949 sum 14.584 23.323 8.903 28.913 Atomic orbital electron populations 1.21811 0.93828 1.01288 1.02089 1.21212 0.95924 0.95346 0.92767 1.22011 1.01139 0.93757 1.01881 1.23269 1.00210 0.87668 0.97296 1.65289 1.41669 1.15582 1.02302 1.22248 0.95177 0.91873 0.97918 1.22621 0.86208 0.94008 0.99220 1.87961 1.33144 1.24252 1.85847 1.20267 0.95520 0.79925 0.93865 1.21161 0.97449 0.95945 1.43452 0.95392 1.25857 0.98205 0.99327 0.95220 1.70039 1.22282 1.16623 1.49337 0.85593 0.79544 0.77684 0.79410 1.18513 1.19647 1.16919 1.23248 0.97170 0.97613 0.90607 1.20959 0.96568 0.93362 0.95448 0.90662 1.19667 0.94828 0.97661 0.94654 1.21220 1.00439 0.98902 0.94381 1.21380 0.94634 0.97859 1.00316 1.21424 0.96600 1.00484 0.96428 1.21375 1.00182 0.97778 0.94901 1.21070 0.93904 0.98804 1.00012 0.92022 0.91823 0.94066 0.91705 0.92142 0.92425 0.90945 0.92421 0.90522 0.90580 0.92523 0.94017 0.97202 0.97781 0.91813 0.92109 0.92118 0.85959 0.84546 0.84278 0.84427 0.86047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.22 71.98 0.59 -2.39 16 2 C -0.05 -1.10 1.02 -51.29 -0.05 -1.15 16 3 C -0.13 -2.22 7.20 71.98 0.52 -1.70 16 4 C 0.04 1.02 5.55 86.45 0.48 1.50 16 5 N -0.52 -15.52 5.29 -881.49 -4.66 -20.18 16 6 C 0.06 1.59 5.22 86.30 0.45 2.04 16 7 C 0.06 1.99 6.13 71.98 0.44 2.43 16 8 O -0.39 -19.18 10.27 -148.98 -1.53 -20.71 16 9 C 0.18 9.44 4.76 71.24 0.34 9.78 16 10 C -0.54 -34.29 9.99 25.60 0.26 -34.04 16 11 H 0.03 1.99 8.06 -2.91 -0.02 1.97 16 12 C 0.01 0.70 5.47 84.65 0.46 1.17 16 13 N -0.94 -60.82 13.96 21.45 0.30 -60.52 16 14 Si 0.96 44.55 27.47 68.60 1.88 46.43 16 15 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 16 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 17 H -0.25 -10.54 6.54 99.48 0.65 -9.89 16 18 C 0.04 1.06 5.32 86.45 0.46 1.52 16 19 C -0.04 -1.01 2.93 -10.65 -0.03 -1.04 16 20 H 0.07 1.90 7.54 -2.39 -0.02 1.88 16 21 C -0.07 -1.31 3.23 -19.86 -0.06 -1.38 16 22 C -0.13 -2.40 9.58 22.27 0.21 -2.18 16 23 C -0.12 -1.90 10.05 22.27 0.22 -1.68 16 24 C -0.13 -1.84 10.05 22.27 0.22 -1.61 16 25 C -0.12 -1.82 10.05 22.27 0.22 -1.60 16 26 C -0.12 -2.06 6.48 22.27 0.14 -1.91 16 27 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 29 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.06 1.03 5.61 -2.39 -0.01 1.02 16 31 H 0.06 0.93 8.13 -2.39 -0.02 0.91 16 32 H 0.06 1.01 7.09 -2.39 -0.02 1.00 16 33 H 0.07 1.85 7.86 -2.39 -0.02 1.84 16 34 H 0.06 1.14 7.58 -2.39 -0.02 1.12 16 35 H 0.08 2.24 8.08 -2.39 -0.02 2.22 16 36 H 0.08 1.63 7.77 -2.39 -0.02 1.61 16 37 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.04 1.41 7.28 -2.39 -0.02 1.39 16 39 H 0.01 0.51 7.20 -2.39 -0.02 0.50 16 40 H 0.00 0.23 7.57 -2.39 -0.02 0.21 16 41 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 42 H 0.06 1.34 5.70 -2.38 -0.01 1.33 16 43 H 0.06 1.81 7.73 -2.39 -0.02 1.79 16 44 H 0.12 2.09 8.01 -2.91 -0.02 2.07 16 45 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 46 H 0.14 1.30 8.06 -2.91 -0.02 1.27 16 47 H 0.14 1.43 8.06 -2.91 -0.02 1.40 16 48 H 0.12 1.95 6.53 -2.91 -0.02 1.93 16 Total: -1.00 -73.39 371.74 1.73 -71.66 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.85 Total: 15.56 kcal Atomic # 6 Polarization: -37.12 SS G_CDS: 4.88 Total: -32.24 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -4.36 Total: -80.70 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -1.53 Total: -20.71 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.43 kcal Total: -73.39 1.73 -71.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339043853.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.364 kcal (2) G-P(sol) polarization free energy of solvation -73.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds