Wall clock time and date at job start Tue Mar 31 2020 08:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 110.28530 * 2 1 4 4 C 1.54377 * 110.32182 * 122.12531 * 2 1 3 5 5 N 1.48564 * 104.59507 * 95.04192 * 4 2 1 6 6 C 1.46903 * 110.99925 * 159.03541 * 5 4 2 7 7 C 1.52997 * 109.47029 * 190.00265 * 6 5 4 8 8 O 1.42893 * 109.47125 * 65.00259 * 7 6 5 9 9 C 1.42905 * 114.00123 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47398 * 179.97438 * 9 8 7 11 11 H 1.07995 * 119.99634 * 0.02562 * 10 9 8 12 12 C 1.37867 * 119.99900 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00296 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99852 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47110 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47329 * 119.99953 * 14 12 10 17 17 H 1.48506 * 109.46909 * 239.99803 * 14 12 10 18 18 C 1.48563 * 104.21781 * 39.48345 * 5 4 2 19 19 C 1.54262 * 110.32342 * 237.87258 * 2 1 3 20 20 H 1.09001 * 110.32208 * 359.97438 * 19 2 1 21 21 C 1.50699 * 110.32593 * 122.20852 * 19 2 1 22 22 C 1.38229 * 119.99918 * 70.80046 * 21 19 2 23 23 C 1.38233 * 120.00022 * 179.77139 * 22 21 19 24 24 C 1.38243 * 119.99814 * 0.50227 * 23 22 21 25 25 C 1.38234 * 119.99830 * 359.75002 * 24 23 22 26 26 C 1.38234 * 119.99991 * 359.97438 * 25 24 23 27 27 H 1.09003 * 109.47253 * 60.70241 * 1 2 3 28 28 H 1.08999 * 109.46819 * 180.69929 * 1 2 3 29 29 H 1.08997 * 109.47241 * 300.70320 * 1 2 3 30 30 H 1.08995 * 109.47675 * 52.63607 * 3 2 1 31 31 H 1.09004 * 109.46569 * 172.64236 * 3 2 1 32 32 H 1.09007 * 109.47158 * 292.63367 * 3 2 1 33 33 H 1.08999 * 110.40818 * 213.82063 * 4 2 1 34 34 H 1.08996 * 110.41229 * 336.14726 * 4 2 1 35 35 H 1.08997 * 109.47152 * 310.00755 * 6 5 4 36 36 H 1.08995 * 109.46671 * 70.00541 * 6 5 4 37 37 H 1.08994 * 109.47063 * 185.00380 * 7 6 5 38 38 H 1.09003 * 109.46961 * 305.00333 * 7 6 5 39 39 H 1.08999 * 109.47322 * 300.00437 * 9 8 7 40 40 H 1.09006 * 109.47007 * 59.99837 * 9 8 7 41 41 H 0.97006 * 120.00354 * 180.02562 * 13 12 10 42 42 H 1.09002 * 110.41527 * 79.29477 * 18 5 4 43 43 H 1.09001 * 110.40910 * 201.73675 * 18 5 4 44 44 H 1.08010 * 120.00243 * 359.97438 * 22 21 19 45 45 H 1.07999 * 120.00337 * 180.22895 * 23 22 21 46 46 H 1.07999 * 119.99816 * 179.73125 * 24 23 22 47 47 H 1.07996 * 120.00208 * 179.97438 * 25 24 23 48 48 H 1.08005 * 120.00192 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0605 1.4351 0.0000 4 6 2.0662 -0.7698 1.2260 5 7 2.3147 -2.1460 0.7246 6 6 3.2649 -2.8579 1.5896 7 6 3.6869 -4.1653 0.9162 8 8 4.4111 -3.8727 -0.2804 9 6 4.8541 -5.0314 -0.9898 10 6 5.6014 -4.6073 -2.2278 11 1 5.7259 -3.5579 -2.4504 12 6 6.1261 -5.5590 -3.0762 13 7 5.9740 -6.8369 -2.8054 14 14 7.0530 -5.0332 -4.6105 15 1 7.0840 -3.5505 -4.6864 16 1 8.4419 -5.5555 -4.5531 17 1 6.3694 -5.5758 -5.8121 18 6 2.8806 -1.9428 -0.6339 19 6 2.0658 -0.7693 -1.2251 20 1 1.2388 -1.1473 -1.8261 21 6 2.9540 0.1214 -2.0551 22 6 4.1984 0.4918 -1.5809 23 6 5.0150 1.3049 -2.3443 24 6 4.5829 1.7561 -3.5775 25 6 3.3363 1.3899 -4.0494 26 6 2.5220 0.5721 -3.2884 27 1 -0.3634 0.5029 -0.8962 28 1 -0.3633 -1.0276 0.0125 29 1 -0.3633 0.5247 0.8836 30 1 1.6016 1.9922 0.8167 31 1 3.1425 1.4224 0.1316 32 1 1.8155 1.9130 -0.9486 33 1 2.9941 -0.3211 1.5806 34 1 1.3221 -0.7821 2.0224 35 1 4.1434 -2.2343 1.7549 36 1 2.7908 -3.0784 2.5460 37 1 4.3215 -4.7352 1.5948 38 1 2.8004 -4.7501 0.6706 39 1 5.5131 -5.6189 -0.3505 40 1 3.9921 -5.6346 -1.2749 41 1 6.3435 -7.5065 -3.4022 42 1 3.9360 -1.6776 -0.5704 43 1 2.7490 -2.8400 -1.2387 44 1 4.5341 0.1432 -0.6153 45 1 5.9888 1.5913 -1.9755 46 1 5.2191 2.3949 -4.1720 47 1 2.9984 1.7427 -5.0126 48 1 1.5478 0.2863 -3.6569 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339043854.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:27 Heat of formation + Delta-G solvation = -23.707315 kcal Electronic energy + Delta-G solvation = -26031.184017 eV Core-core repulsion = 22664.606984 eV Total energy + Delta-G solvation = -3366.577033 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.44116 -38.25121 -36.75667 -34.24256 -32.62533 -31.83005 -30.79135 -29.57703 -27.94977 -27.06577 -26.70877 -24.75620 -23.15647 -22.35784 -22.14799 -21.01262 -20.33659 -18.64335 -16.70602 -16.36232 -16.03290 -15.71998 -15.25618 -14.82137 -14.70597 -14.31550 -14.14895 -13.92658 -13.67654 -13.44501 -13.18392 -13.05316 -12.85315 -12.68193 -12.18992 -12.15061 -11.90758 -11.63524 -11.49645 -11.35813 -11.16323 -11.02848 -10.85214 -10.74012 -10.72078 -10.47142 -10.37560 -10.33024 -10.28030 -9.88167 -9.06476 -8.79960 -8.70230 -8.42444 -8.14631 -8.10148 -6.09914 -4.11158 1.54393 1.58704 3.29255 3.36086 3.42852 3.94119 4.25376 4.35738 4.60543 4.80949 4.88020 4.94680 5.06702 5.12819 5.18113 5.27024 5.28033 5.37259 5.49613 5.54084 5.63117 5.67381 5.68916 5.70824 5.75621 5.77978 5.79706 5.97609 6.04850 6.07869 6.08271 6.16010 6.18942 6.27951 6.29483 6.31549 6.40196 6.50820 6.63680 6.68114 6.78747 6.86626 7.12669 7.14743 7.21807 7.36710 7.45006 7.80653 8.16468 8.57680 9.02483 9.53911 11.01645 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.011424 B = 0.005430 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.477810 B = 5155.381338 C = 6981.175267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.058 4.058 3 C -0.141 4.141 4 C 0.040 3.960 5 N -0.509 5.509 6 C 0.050 3.950 7 C 0.060 3.940 8 O -0.392 6.392 9 C 0.195 3.805 10 C -0.509 4.509 11 H 0.066 0.934 12 C 0.057 3.943 13 N -0.898 5.898 14 Si 0.902 3.098 15 H -0.270 1.270 16 H -0.283 1.283 17 H -0.282 1.282 18 C 0.057 3.943 19 C -0.055 4.055 20 H 0.084 0.916 21 C -0.055 4.055 22 C -0.105 4.105 23 C -0.119 4.119 24 C -0.129 4.129 25 C -0.121 4.121 26 C -0.119 4.119 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.039 0.961 36 H 0.079 0.921 37 H 0.041 0.959 38 H 0.046 0.954 39 H 0.002 0.998 40 H 0.005 0.995 41 H 0.263 0.737 42 H 0.063 0.937 43 H 0.097 0.903 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.116 0.884 47 H 0.117 0.883 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.685 16.714 5.261 19.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.059 4.059 3 C -0.198 4.198 4 C -0.089 4.089 5 N -0.233 5.233 6 C -0.078 4.078 7 C -0.017 4.017 8 O -0.312 6.312 9 C 0.121 3.879 10 C -0.548 4.548 11 H 0.084 0.916 12 C -0.144 4.144 13 N -0.538 5.538 14 Si 0.730 3.270 15 H -0.194 1.194 16 H -0.209 1.209 17 H -0.208 1.208 18 C -0.071 4.071 19 C -0.074 4.074 20 H 0.102 0.898 21 C -0.055 4.055 22 C -0.123 4.123 23 C -0.138 4.138 24 C -0.147 4.147 25 C -0.140 4.140 26 C -0.137 4.137 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.057 0.943 36 H 0.097 0.903 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.020 0.980 40 H 0.022 0.978 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.115 0.885 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.134 0.866 47 H 0.135 0.865 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.082 16.374 5.131 19.414 hybrid contribution 1.345 0.143 -0.703 1.524 sum -7.737 16.517 4.429 18.770 Atomic orbital electron populations 1.21813 0.93817 1.02196 1.01043 1.21251 0.95817 0.94700 0.94096 1.22101 1.01192 0.95089 1.01418 1.23247 0.99487 0.89354 0.96765 1.65459 1.41000 1.13876 1.02992 1.22305 0.94014 0.95547 0.95968 1.22255 0.95478 0.95214 0.88796 1.87934 1.73152 1.34640 1.35492 1.20171 0.93547 0.83298 0.90911 1.21058 1.34034 0.93796 1.05882 0.91623 1.24919 0.96405 0.94688 0.98377 1.69972 1.45945 0.99863 1.38000 0.86359 0.79311 0.78971 0.82372 1.19450 1.20891 1.20838 1.23352 0.96846 0.97593 0.89267 1.21217 0.97052 0.94250 0.94855 0.89796 1.19698 0.94623 0.96767 0.94458 1.20989 0.93796 0.97630 0.99874 1.21091 0.99356 0.98336 0.94967 1.21054 0.96406 1.00911 0.96361 1.21049 0.94701 0.98713 0.99488 1.21002 0.99853 0.98450 0.94412 0.92964 0.91802 0.93009 0.93287 0.92050 0.92286 0.94143 0.90626 0.94318 0.90259 0.94136 0.93590 0.97973 0.97751 0.92772 0.91838 0.88489 0.86298 0.86434 0.86628 0.86537 0.86412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 8.23 37.16 0.31 -1.07 16 2 C -0.06 -0.69 1.02 -153.12 -0.16 -0.84 16 3 C -0.14 -1.54 7.19 37.16 0.27 -1.27 16 4 C 0.04 0.50 5.58 -2.18 -0.01 0.49 16 5 N -0.51 -7.76 5.49 -229.82 -1.26 -9.02 16 6 C 0.05 0.76 5.63 -3.82 -0.02 0.74 16 7 C 0.06 1.12 6.03 37.16 0.22 1.34 16 8 O -0.39 -9.06 6.68 -35.23 -0.24 -9.29 16 9 C 0.19 5.28 5.69 36.01 0.20 5.48 16 10 C -0.51 -14.84 9.43 -34.44 -0.32 -15.17 16 11 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 14 Si 0.90 22.05 29.54 -169.99 -5.02 17.02 16 15 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 C 0.06 0.96 4.09 -2.06 -0.01 0.96 16 19 C -0.05 -0.77 2.93 -90.26 -0.26 -1.04 16 20 H 0.08 1.18 7.55 -51.93 -0.39 0.79 16 21 C -0.06 -0.78 3.26 -104.63 -0.34 -1.12 16 22 C -0.10 -1.51 6.48 -39.59 -0.26 -1.76 16 23 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 24 C -0.13 -1.63 10.05 -39.58 -0.40 -2.02 16 25 C -0.12 -1.52 10.05 -39.58 -0.40 -1.92 16 26 C -0.12 -1.58 9.58 -39.58 -0.38 -1.96 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.71 5.56 -51.93 -0.29 0.42 16 32 H 0.06 0.67 7.19 -51.92 -0.37 0.30 16 33 H 0.04 0.51 7.43 -51.93 -0.39 0.12 16 34 H 0.08 0.86 7.86 -51.93 -0.41 0.45 16 35 H 0.04 0.60 7.88 -51.93 -0.41 0.19 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 40 H 0.00 0.13 8.14 -51.93 -0.42 -0.29 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.06 1.20 5.18 -51.93 -0.27 0.93 16 43 H 0.10 1.99 7.03 -51.93 -0.37 1.62 16 44 H 0.12 1.73 6.52 -52.48 -0.34 1.38 16 45 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 46 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 47 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 48 H 0.12 1.38 8.01 -52.48 -0.42 0.96 16 LS Contribution 370.84 15.07 5.59 5.59 Total: -1.00 -30.51 370.84 -10.52 -41.03 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -8.27 Total: 0.52 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: -2.05 Total: -19.61 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: -0.53 Total: -35.25 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -0.24 Total: -9.29 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.51 -10.52 -41.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339043854.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.321 kcal (2) G-P(sol) polarization free energy of solvation -30.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds