Wall clock time and date at job start Tue Mar 31 2020 08:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 110.28530 * 2 1 4 4 C 1.54377 * 110.32182 * 122.12531 * 2 1 3 5 5 N 1.48564 * 104.59507 * 95.04192 * 4 2 1 6 6 C 1.46903 * 110.99925 * 159.03541 * 5 4 2 7 7 C 1.52997 * 109.47029 * 190.00265 * 6 5 4 8 8 O 1.42893 * 109.47125 * 65.00259 * 7 6 5 9 9 C 1.42905 * 114.00123 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47398 * 179.97438 * 9 8 7 11 11 H 1.07995 * 119.99634 * 0.02562 * 10 9 8 12 12 C 1.37867 * 119.99900 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00296 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99852 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47110 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47329 * 119.99953 * 14 12 10 17 17 H 1.48506 * 109.46909 * 239.99803 * 14 12 10 18 18 C 1.48563 * 104.21781 * 39.48345 * 5 4 2 19 19 C 1.54262 * 110.32342 * 237.87258 * 2 1 3 20 20 H 1.09001 * 110.32208 * 359.97438 * 19 2 1 21 21 C 1.50699 * 110.32593 * 122.20852 * 19 2 1 22 22 C 1.38229 * 119.99918 * 70.80046 * 21 19 2 23 23 C 1.38233 * 120.00022 * 179.77139 * 22 21 19 24 24 C 1.38243 * 119.99814 * 0.50227 * 23 22 21 25 25 C 1.38234 * 119.99830 * 359.75002 * 24 23 22 26 26 C 1.38234 * 119.99991 * 359.97438 * 25 24 23 27 27 H 1.09003 * 109.47253 * 60.70241 * 1 2 3 28 28 H 1.08999 * 109.46819 * 180.69929 * 1 2 3 29 29 H 1.08997 * 109.47241 * 300.70320 * 1 2 3 30 30 H 1.08995 * 109.47675 * 52.63607 * 3 2 1 31 31 H 1.09004 * 109.46569 * 172.64236 * 3 2 1 32 32 H 1.09007 * 109.47158 * 292.63367 * 3 2 1 33 33 H 1.08999 * 110.40818 * 213.82063 * 4 2 1 34 34 H 1.08996 * 110.41229 * 336.14726 * 4 2 1 35 35 H 1.08997 * 109.47152 * 310.00755 * 6 5 4 36 36 H 1.08995 * 109.46671 * 70.00541 * 6 5 4 37 37 H 1.08994 * 109.47063 * 185.00380 * 7 6 5 38 38 H 1.09003 * 109.46961 * 305.00333 * 7 6 5 39 39 H 1.08999 * 109.47322 * 300.00437 * 9 8 7 40 40 H 1.09006 * 109.47007 * 59.99837 * 9 8 7 41 41 H 0.97006 * 120.00354 * 180.02562 * 13 12 10 42 42 H 1.09002 * 110.41527 * 79.29477 * 18 5 4 43 43 H 1.09001 * 110.40910 * 201.73675 * 18 5 4 44 44 H 1.08010 * 120.00243 * 359.97438 * 22 21 19 45 45 H 1.07999 * 120.00337 * 180.22895 * 23 22 21 46 46 H 1.07999 * 119.99816 * 179.73125 * 24 23 22 47 47 H 1.07996 * 120.00208 * 179.97438 * 25 24 23 48 48 H 1.08005 * 120.00192 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0605 1.4351 0.0000 4 6 2.0662 -0.7698 1.2260 5 7 2.3147 -2.1460 0.7246 6 6 3.2649 -2.8579 1.5896 7 6 3.6869 -4.1653 0.9162 8 8 4.4111 -3.8727 -0.2804 9 6 4.8541 -5.0314 -0.9898 10 6 5.6014 -4.6073 -2.2278 11 1 5.7259 -3.5579 -2.4504 12 6 6.1261 -5.5590 -3.0762 13 7 5.9740 -6.8369 -2.8054 14 14 7.0530 -5.0332 -4.6105 15 1 7.0840 -3.5505 -4.6864 16 1 8.4419 -5.5555 -4.5531 17 1 6.3694 -5.5758 -5.8121 18 6 2.8806 -1.9428 -0.6339 19 6 2.0658 -0.7693 -1.2251 20 1 1.2388 -1.1473 -1.8261 21 6 2.9540 0.1214 -2.0551 22 6 4.1984 0.4918 -1.5809 23 6 5.0150 1.3049 -2.3443 24 6 4.5829 1.7561 -3.5775 25 6 3.3363 1.3899 -4.0494 26 6 2.5220 0.5721 -3.2884 27 1 -0.3634 0.5029 -0.8962 28 1 -0.3633 -1.0276 0.0125 29 1 -0.3633 0.5247 0.8836 30 1 1.6016 1.9922 0.8167 31 1 3.1425 1.4224 0.1316 32 1 1.8155 1.9130 -0.9486 33 1 2.9941 -0.3211 1.5806 34 1 1.3221 -0.7821 2.0224 35 1 4.1434 -2.2343 1.7549 36 1 2.7908 -3.0784 2.5460 37 1 4.3215 -4.7352 1.5948 38 1 2.8004 -4.7501 0.6706 39 1 5.5131 -5.6189 -0.3505 40 1 3.9921 -5.6346 -1.2749 41 1 6.3435 -7.5065 -3.4022 42 1 3.9360 -1.6776 -0.5704 43 1 2.7490 -2.8400 -1.2387 44 1 4.5341 0.1432 -0.6153 45 1 5.9888 1.5913 -1.9755 46 1 5.2191 2.3949 -4.1720 47 1 2.9984 1.7427 -5.0126 48 1 1.5478 0.2863 -3.6569 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339043854.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:26 Heat of formation + Delta-G solvation = -40.829352 kcal Electronic energy + Delta-G solvation = -26031.926485 eV Core-core repulsion = 22664.606984 eV Total energy + Delta-G solvation = -3367.319500 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.53485 -39.43205 -38.39692 -35.61318 -34.73784 -32.85842 -31.80118 -31.01739 -29.41855 -28.54068 -27.89819 -25.87892 -24.72085 -24.11962 -23.32343 -22.19496 -21.55717 -19.68143 -18.58788 -17.81403 -17.45689 -17.35358 -16.52732 -16.28105 -16.02655 -15.69036 -15.45582 -15.22708 -14.96911 -14.71233 -14.51658 -14.14147 -13.99312 -13.87406 -13.74309 -13.37902 -13.08380 -13.02286 -13.00068 -12.74094 -12.63259 -12.48614 -12.28349 -12.24794 -12.03964 -11.86844 -11.55280 -11.52912 -11.38166 -11.32728 -11.20460 -10.86610 -10.18713 -9.72866 -9.48203 -9.34010 -8.33562 -6.44695 0.51843 0.56054 1.36074 1.37075 1.51709 2.31916 2.91112 3.00488 3.05774 3.18745 3.58631 3.76474 3.82754 4.07583 4.08691 4.17838 4.26215 4.31678 4.32743 4.44023 4.49038 4.51847 4.54705 4.67462 4.69935 4.76765 4.79564 4.82432 4.83289 4.86829 4.92086 5.07893 5.10960 5.13253 5.17344 5.20103 5.22750 5.28267 5.35668 5.40386 5.51421 5.53759 5.62512 5.67108 5.80549 5.93670 5.95608 6.11825 6.19179 6.52238 6.81297 7.26953 8.79077 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.011424 B = 0.005430 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.477810 B = 5155.381338 C = 6981.175267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.052 4.052 3 C -0.133 4.133 4 C 0.041 3.959 5 N -0.515 5.515 6 C 0.058 3.942 7 C 0.052 3.948 8 O -0.397 6.397 9 C 0.212 3.788 10 C -0.536 4.536 11 H 0.057 0.943 12 C 0.009 3.991 13 N -0.930 5.930 14 Si 0.975 3.025 15 H -0.267 1.267 16 H -0.270 1.270 17 H -0.271 1.271 18 C 0.066 3.934 19 C -0.050 4.050 20 H 0.080 0.920 21 C -0.068 4.068 22 C -0.120 4.120 23 C -0.132 4.132 24 C -0.134 4.134 25 C -0.124 4.124 26 C -0.131 4.131 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.042 0.958 34 H 0.097 0.903 35 H 0.037 0.963 36 H 0.114 0.886 37 H 0.049 0.951 38 H 0.041 0.959 39 H -0.017 1.017 40 H -0.019 1.019 41 H 0.270 0.730 42 H 0.039 0.961 43 H 0.052 0.948 44 H 0.108 0.892 45 H 0.131 0.869 46 H 0.140 0.860 47 H 0.142 0.858 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.079 18.777 4.919 21.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.052 4.052 3 C -0.190 4.190 4 C -0.086 4.086 5 N -0.239 5.239 6 C -0.070 4.070 7 C -0.025 4.025 8 O -0.316 6.316 9 C 0.137 3.863 10 C -0.574 4.574 11 H 0.075 0.925 12 C -0.190 4.190 13 N -0.570 5.570 14 Si 0.798 3.202 15 H -0.191 1.191 16 H -0.195 1.195 17 H -0.196 1.196 18 C -0.062 4.062 19 C -0.069 4.069 20 H 0.098 0.902 21 C -0.069 4.069 22 C -0.138 4.138 23 C -0.150 4.150 24 C -0.151 4.151 25 C -0.142 4.142 26 C -0.149 4.149 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.115 0.885 35 H 0.056 0.944 36 H 0.132 0.868 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.000 1.000 40 H -0.001 1.001 41 H 0.079 0.921 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.126 0.874 45 H 0.149 0.851 46 H 0.158 0.842 47 H 0.160 0.840 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.489 18.444 4.813 21.293 hybrid contribution 1.435 -0.522 -0.537 1.619 sum -8.054 17.922 4.276 20.109 Atomic orbital electron populations 1.21779 0.92402 1.01923 1.02329 1.21245 0.96828 0.94838 0.92337 1.22013 1.00682 0.94397 1.01946 1.23342 1.00182 0.87565 0.97543 1.65446 1.40418 1.15829 1.02232 1.22316 0.94423 0.93600 0.96707 1.22553 0.94921 0.97676 0.87380 1.87943 1.73632 1.32894 1.37172 1.19745 0.92009 0.83927 0.90663 1.21305 1.35245 0.93631 1.07227 0.92467 1.25871 0.96902 0.94545 1.01646 1.70073 1.46479 1.01015 1.39410 0.85254 0.78239 0.78672 0.78011 1.19109 1.19517 1.19647 1.23031 0.96145 0.96834 0.90198 1.21147 0.96431 0.93487 0.95826 0.90196 1.19762 0.94758 0.97218 0.95117 1.21000 0.94349 0.98543 0.99910 1.21352 0.99889 0.98248 0.95476 1.21394 0.96814 1.00802 0.96126 1.21397 0.94491 0.97987 1.00314 1.21246 1.00752 0.98724 0.94145 0.92316 0.92852 0.91099 0.91418 0.92983 0.92626 0.93991 0.88512 0.94447 0.86829 0.93258 0.94114 0.99967 1.00133 0.92120 0.94263 0.92928 0.87415 0.85148 0.84191 0.84003 0.85174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 8.23 71.98 0.59 -1.81 16 2 C -0.05 -1.17 1.02 -51.28 -0.05 -1.22 16 3 C -0.13 -2.70 7.19 71.98 0.52 -2.18 16 4 C 0.04 0.97 5.58 86.45 0.48 1.46 16 5 N -0.52 -15.67 5.49 -881.01 -4.84 -20.50 16 6 C 0.06 1.74 5.63 86.30 0.49 2.22 16 7 C 0.05 1.98 6.03 71.98 0.43 2.42 16 8 O -0.40 -19.30 6.68 -148.98 -0.99 -20.30 16 9 C 0.21 12.08 5.69 71.24 0.41 12.48 16 10 C -0.54 -32.36 9.43 25.60 0.24 -32.12 16 11 H 0.06 3.47 7.81 -2.91 -0.02 3.44 16 12 C 0.01 0.51 5.46 84.65 0.46 0.98 16 13 N -0.93 -56.76 13.29 21.44 0.28 -56.47 16 14 Si 0.98 45.39 29.54 68.60 2.03 47.42 16 15 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 16 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 18 C 0.07 2.35 4.09 86.53 0.35 2.71 16 19 C -0.05 -1.43 2.93 -10.56 -0.03 -1.46 16 20 H 0.08 2.31 7.55 -2.39 -0.02 2.29 16 21 C -0.07 -1.95 3.26 -19.87 -0.06 -2.02 16 22 C -0.12 -3.51 6.48 22.27 0.14 -3.36 16 23 C -0.13 -3.45 10.05 22.27 0.22 -3.23 16 24 C -0.13 -3.13 10.05 22.27 0.22 -2.91 16 25 C -0.12 -2.88 10.05 22.27 0.22 -2.66 16 26 C -0.13 -3.37 9.58 22.27 0.21 -3.16 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.05 1.16 5.56 -2.38 -0.01 1.15 16 32 H 0.05 1.17 7.19 -2.38 -0.02 1.16 16 33 H 0.04 1.00 7.43 -2.39 -0.02 0.98 16 34 H 0.10 1.92 7.86 -2.39 -0.02 1.90 16 35 H 0.04 1.15 7.88 -2.39 -0.02 1.13 16 36 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 37 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 39 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 40 H -0.02 -1.15 8.14 -2.38 -0.02 -1.17 16 41 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 42 H 0.04 1.58 5.18 -2.39 -0.01 1.57 16 43 H 0.05 2.32 7.03 -2.39 -0.02 2.30 16 44 H 0.11 3.29 6.52 -2.91 -0.02 3.27 16 45 H 0.13 2.94 8.06 -2.91 -0.02 2.92 16 46 H 0.14 2.53 8.06 -2.91 -0.02 2.50 16 47 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 48 H 0.13 2.92 8.01 -2.91 -0.02 2.89 16 Total: -1.00 -67.60 370.84 2.24 -65.36 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.91 Total: 18.35 kcal Atomic # 6 Polarization: -38.71 SS G_CDS: 4.86 Total: -33.85 kcal Atomic # 7 Polarization: -72.42 SS G_CDS: -4.55 Total: -76.97 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.99 Total: -20.30 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -67.60 2.24 -65.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339043854.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.530 kcal (2) G-P(sol) polarization free energy of solvation -67.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds