Wall clock time and date at job start Tue Mar 31 2020 09:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47259 * 2 1 4 4 C 1.52995 * 109.47148 * 119.99736 * 2 1 3 5 5 C 1.53002 * 109.47161 * 239.99912 * 2 1 3 6 6 H 1.08995 * 110.65904 * 189.57664 * 5 2 1 7 7 C 1.54604 * 110.74144 * 66.37887 * 5 2 1 8 8 N 1.47900 * 102.62895 * 216.06824 * 7 5 2 9 9 C 1.46900 * 111.00178 * 148.99449 * 8 7 5 10 10 C 1.53003 * 109.47063 * 65.50415 * 9 8 7 11 11 O 1.42897 * 109.47477 * 64.70527 * 10 9 8 12 12 C 1.42895 * 114.00227 * 184.95336 * 11 10 9 13 13 C 1.50695 * 109.47097 * 184.95422 * 12 11 10 14 14 H 1.07998 * 120.00431 * 4.96095 * 13 12 11 15 15 C 1.37883 * 120.00002 * 184.95879 * 13 12 11 16 16 N 1.31511 * 119.99845 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00138 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47364 * 89.99886 * 17 15 13 19 19 H 1.48505 * 109.46986 * 209.99923 * 17 15 13 20 20 H 1.48504 * 109.47362 * 329.99551 * 17 15 13 21 21 C 1.40037 * 107.91088 * 27.15886 * 8 7 5 22 22 C 1.39413 * 129.94399 * 161.93115 * 21 8 7 23 23 C 1.37905 * 120.19679 * 179.70964 * 22 21 8 24 24 C 1.38305 * 120.26597 * 359.97438 * 23 22 21 25 25 C 1.38294 * 119.88422 * 0.12500 * 24 23 22 26 26 C 1.37916 * 120.08260 * 0.02562 * 25 24 23 27 27 H 1.08998 * 109.46948 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47392 * 60.00146 * 1 2 3 29 29 H 1.09003 * 109.46861 * 299.99812 * 1 2 3 30 30 H 1.08999 * 109.46629 * 59.99679 * 3 2 1 31 31 H 1.08989 * 109.47206 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46669 * 300.00282 * 3 2 1 33 33 H 1.09002 * 109.47004 * 54.49410 * 4 2 1 34 34 H 1.09009 * 109.47231 * 174.48729 * 4 2 1 35 35 H 1.08995 * 109.47909 * 294.48988 * 4 2 1 36 36 H 1.09003 * 110.77991 * 334.34994 * 7 5 2 37 37 H 1.08994 * 110.78355 * 97.59283 * 7 5 2 38 38 H 1.09000 * 109.46992 * 185.50137 * 9 8 7 39 39 H 1.08996 * 109.47460 * 305.49998 * 9 8 7 40 40 H 1.09000 * 109.46917 * 184.70775 * 10 9 8 41 41 H 1.09003 * 109.46573 * 304.70820 * 10 9 8 42 42 H 1.09002 * 109.47012 * 304.95211 * 12 11 10 43 43 H 1.09003 * 109.47144 * 64.95376 * 12 11 10 44 44 H 0.97004 * 120.00168 * 179.97438 * 16 15 13 45 45 H 1.07999 * 119.89691 * 359.69000 * 22 21 8 46 46 H 1.08000 * 119.86514 * 180.02562 * 23 22 21 47 47 H 1.08001 * 120.05679 * 180.15033 * 24 23 22 48 48 H 1.08003 * 119.96179 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 2.0400 -0.7213 -1.2492 6 1 3.1163 -0.8819 -1.1881 7 6 1.6763 0.0713 -2.5259 8 7 1.3860 -1.0021 -3.5011 9 6 0.3725 -0.5705 -4.4729 10 6 0.9354 0.5689 -5.3249 11 8 2.0318 0.0851 -6.1031 12 6 2.7035 1.0984 -6.8541 13 6 3.7565 0.4632 -7.7251 14 1 3.8454 -0.6123 -7.7678 15 6 4.6065 1.2551 -8.4677 16 7 4.4980 2.5647 -8.4163 17 14 5.9113 0.4678 -9.5479 18 1 5.3532 0.2273 -10.9029 19 1 7.0832 1.3743 -9.6491 20 1 6.3351 -0.8241 -8.9506 21 6 0.9509 -2.1259 -2.7878 22 6 0.2521 -3.2495 -3.2270 23 6 -0.0731 -4.2545 -2.3404 24 6 0.2919 -4.1554 -1.0101 25 6 0.9835 -3.0431 -0.5662 26 6 1.3084 -2.0338 -1.4481 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.5984 -1.7164 1.2999 34 1 3.1256 -0.8075 1.2013 35 1 1.7595 -0.1536 2.1365 36 1 0.7950 0.6905 -2.3587 37 1 2.5179 0.6803 -2.8559 38 1 0.1066 -1.4086 -5.1170 39 1 -0.5147 -0.2239 -3.9430 40 1 0.1568 0.9451 -5.9886 41 1 1.2785 1.3735 -4.6745 42 1 1.9828 1.6243 -7.4803 43 1 3.1748 1.8048 -6.1708 44 1 5.0962 3.1219 -8.9384 45 1 -0.0357 -3.3328 -4.2646 46 1 -0.6142 -5.1227 -2.6865 47 1 0.0376 -4.9456 -0.3192 48 1 1.2695 -2.9647 0.4723 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339130658.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:03 Heat of formation + Delta-G solvation = -18.923568 kcal Electronic energy + Delta-G solvation = -25487.168699 eV Core-core repulsion = 22120.799105 eV Total energy + Delta-G solvation = -3366.369594 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.19153 -37.37525 -37.24408 -35.87191 -32.76283 -31.76515 -30.39143 -29.10782 -27.82651 -27.44558 -27.06632 -26.48510 -23.26634 -22.70169 -22.22399 -21.36072 -20.32925 -18.79382 -16.80178 -16.44066 -16.00853 -15.81166 -15.59748 -15.20630 -14.60865 -14.45509 -14.34658 -14.13963 -13.91499 -13.69484 -13.25543 -13.00911 -12.88018 -12.65933 -12.35611 -12.25560 -12.04584 -11.79604 -11.72672 -11.68036 -11.45699 -11.30242 -11.08347 -10.85393 -10.80041 -10.67633 -10.55130 -10.47015 -10.30148 -10.06385 -9.68492 -9.09013 -8.78688 -8.71463 -8.13927 -7.52903 -6.08610 -4.09639 1.43819 1.47146 3.32171 3.37069 3.43466 3.67621 3.93540 4.36536 4.44027 4.48778 4.61966 4.73380 4.80636 5.01782 5.03470 5.10575 5.21127 5.27944 5.31996 5.41873 5.43523 5.44983 5.50029 5.53440 5.57246 5.66865 5.69674 5.71724 5.76799 5.84110 5.88748 5.95919 5.97999 6.03504 6.07433 6.13928 6.21298 6.22859 6.27662 6.40691 6.54216 6.60197 6.80471 7.09244 7.14658 7.37563 7.45078 7.83022 8.18427 8.61893 9.04430 9.55166 11.02981 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.016327 B = 0.003511 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.492533 B = 7971.989771 C = 8748.810355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.057 4.057 3 C -0.146 4.146 4 C -0.148 4.148 5 C -0.041 4.041 6 H 0.093 0.907 7 C 0.051 3.949 8 N -0.458 5.458 9 C 0.055 3.945 10 C 0.065 3.935 11 O -0.381 6.381 12 C 0.195 3.805 13 C -0.511 4.511 14 H 0.066 0.934 15 C 0.056 3.944 16 N -0.900 5.900 17 Si 0.907 3.093 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.271 1.271 21 C 0.109 3.891 22 C -0.143 4.143 23 C -0.095 4.095 24 C -0.157 4.157 25 C -0.086 4.086 26 C -0.131 4.131 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.051 0.949 40 H 0.043 0.957 41 H 0.038 0.962 42 H -0.001 1.001 43 H 0.007 0.993 44 H 0.263 0.737 45 H 0.121 0.879 46 H 0.121 0.879 47 H 0.118 0.882 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.534 -7.104 19.978 23.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.058 4.058 3 C -0.203 4.203 4 C -0.205 4.205 5 C -0.060 4.060 6 H 0.111 0.889 7 C -0.075 4.075 8 N -0.170 5.170 9 C -0.071 4.071 10 C -0.014 4.014 11 O -0.301 6.301 12 C 0.120 3.880 13 C -0.550 4.550 14 H 0.084 0.916 15 C -0.145 4.145 16 N -0.539 5.539 17 Si 0.734 3.266 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.196 1.196 21 C 0.009 3.991 22 C -0.164 4.164 23 C -0.113 4.113 24 C -0.176 4.176 25 C -0.104 4.104 26 C -0.134 4.134 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.114 0.886 38 H 0.105 0.895 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.017 0.983 43 H 0.025 0.975 44 H 0.073 0.927 45 H 0.139 0.861 46 H 0.139 0.861 47 H 0.136 0.864 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.916 -7.134 19.521 23.028 hybrid contribution 0.117 0.208 -0.419 0.483 sum -9.799 -6.926 19.101 22.558 Atomic orbital electron populations 1.21967 0.94553 1.02273 1.01275 1.20473 0.95736 0.95303 0.94246 1.21936 1.01372 0.95060 1.01917 1.22069 1.01161 1.00599 0.96633 1.21015 0.99894 0.91109 0.93967 0.88936 1.23430 1.01840 0.93226 0.88964 1.60290 1.38719 1.03781 1.14168 1.22392 0.91297 0.99654 0.93782 1.22252 0.91133 0.94414 0.93555 1.87952 1.44317 1.36459 1.61351 1.20187 0.91044 0.86958 0.89768 1.21063 1.15159 0.94106 1.24641 0.91564 1.24939 0.97648 0.94785 0.97099 1.69963 1.38909 1.03448 1.41621 0.86353 0.80635 0.79181 0.80439 1.20496 1.21092 1.19591 1.19782 0.93933 0.93681 0.91655 1.20500 1.01936 0.93801 1.00134 1.20821 0.99358 0.97837 0.93332 1.20908 1.02322 0.98441 0.95946 1.20554 0.98149 0.92720 0.98958 1.20355 1.02687 0.97314 0.93076 0.92004 0.92893 0.92896 0.92632 0.92321 0.92262 0.91898 0.92528 0.92709 0.91987 0.88558 0.89484 0.93109 0.93857 0.94416 0.98291 0.97482 0.92721 0.86149 0.86145 0.86368 0.85933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 7.86 37.16 0.29 -1.07 16 2 C -0.06 -0.55 0.55 -154.51 -0.08 -0.63 16 3 C -0.15 -1.34 8.15 37.16 0.30 -1.03 16 4 C -0.15 -1.24 8.25 37.16 0.31 -0.93 16 5 C -0.04 -0.50 2.47 -90.50 -0.22 -0.72 16 6 H 0.09 1.18 8.13 -51.93 -0.42 0.76 16 7 C 0.05 0.70 3.95 -2.43 -0.01 0.69 16 8 N -0.46 -7.39 5.00 -169.02 -0.84 -8.24 16 9 C 0.05 0.85 5.02 -3.82 -0.02 0.83 16 10 C 0.06 1.20 6.03 37.16 0.22 1.43 16 11 O -0.38 -9.39 10.27 -35.23 -0.36 -9.75 16 12 C 0.19 5.42 5.69 36.00 0.20 5.63 16 13 C -0.51 -15.36 9.43 -34.44 -0.32 -15.68 16 14 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 17 Si 0.91 22.21 29.54 -169.99 -5.02 17.19 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 C 0.11 1.60 5.96 -83.40 -0.50 1.10 16 22 C -0.14 -1.91 9.50 -39.27 -0.37 -2.28 16 23 C -0.09 -1.07 10.02 -39.68 -0.40 -1.47 16 24 C -0.16 -1.66 10.06 -39.54 -0.40 -2.06 16 25 C -0.09 -0.95 8.30 -39.68 -0.33 -1.28 16 26 C -0.13 -1.68 4.39 -104.04 -0.46 -2.14 16 27 H 0.06 0.62 6.11 -51.93 -0.32 0.31 16 28 H 0.05 0.53 6.49 -51.93 -0.34 0.20 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.54 8.14 -51.94 -0.42 0.12 16 32 H 0.06 0.57 6.79 -51.93 -0.35 0.22 16 33 H 0.06 0.51 4.77 -51.93 -0.25 0.26 16 34 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.77 5.36 -51.93 -0.28 0.50 16 37 H 0.10 1.45 8.05 -51.93 -0.42 1.03 16 38 H 0.09 1.36 7.06 -51.93 -0.37 0.99 16 39 H 0.05 0.66 7.96 -51.93 -0.41 0.25 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.04 0.68 7.16 -51.93 -0.37 0.31 16 42 H 0.00 -0.02 8.14 -51.93 -0.42 -0.44 16 43 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.12 1.55 7.25 -52.49 -0.38 1.17 16 46 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 47 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 48 H 0.12 1.13 5.22 -52.48 -0.27 0.85 16 LS Contribution 368.21 15.07 5.55 5.55 Total: -1.00 -32.27 368.21 -9.77 -42.04 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -7.95 Total: -2.26 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: -1.88 Total: -18.07 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: -0.11 Total: -34.69 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -0.36 Total: -9.75 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.27 -9.77 -42.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339130658.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.116 kcal (2) G-P(sol) polarization free energy of solvation -32.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds