Wall clock time and date at job start Tue Mar 31 2020 09:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47259 * 2 1 4 4 C 1.52995 * 109.47148 * 119.99736 * 2 1 3 5 5 C 1.53002 * 109.47161 * 239.99912 * 2 1 3 6 6 H 1.08995 * 110.65904 * 189.57664 * 5 2 1 7 7 C 1.54604 * 110.74144 * 66.37887 * 5 2 1 8 8 N 1.47900 * 102.62895 * 216.06824 * 7 5 2 9 9 C 1.46900 * 111.00178 * 148.99449 * 8 7 5 10 10 C 1.53003 * 109.47063 * 65.50415 * 9 8 7 11 11 O 1.42897 * 109.47477 * 64.70527 * 10 9 8 12 12 C 1.42895 * 114.00227 * 184.95336 * 11 10 9 13 13 C 1.50695 * 109.47097 * 184.95422 * 12 11 10 14 14 H 1.07998 * 120.00431 * 4.96095 * 13 12 11 15 15 C 1.37883 * 120.00002 * 184.95879 * 13 12 11 16 16 N 1.31511 * 119.99845 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00138 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47364 * 89.99886 * 17 15 13 19 19 H 1.48505 * 109.46986 * 209.99923 * 17 15 13 20 20 H 1.48504 * 109.47362 * 329.99551 * 17 15 13 21 21 C 1.40037 * 107.91088 * 27.15886 * 8 7 5 22 22 C 1.39413 * 129.94399 * 161.93115 * 21 8 7 23 23 C 1.37905 * 120.19679 * 179.70964 * 22 21 8 24 24 C 1.38305 * 120.26597 * 359.97438 * 23 22 21 25 25 C 1.38294 * 119.88422 * 0.12500 * 24 23 22 26 26 C 1.37916 * 120.08260 * 0.02562 * 25 24 23 27 27 H 1.08998 * 109.46948 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47392 * 60.00146 * 1 2 3 29 29 H 1.09003 * 109.46861 * 299.99812 * 1 2 3 30 30 H 1.08999 * 109.46629 * 59.99679 * 3 2 1 31 31 H 1.08989 * 109.47206 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46669 * 300.00282 * 3 2 1 33 33 H 1.09002 * 109.47004 * 54.49410 * 4 2 1 34 34 H 1.09009 * 109.47231 * 174.48729 * 4 2 1 35 35 H 1.08995 * 109.47909 * 294.48988 * 4 2 1 36 36 H 1.09003 * 110.77991 * 334.34994 * 7 5 2 37 37 H 1.08994 * 110.78355 * 97.59283 * 7 5 2 38 38 H 1.09000 * 109.46992 * 185.50137 * 9 8 7 39 39 H 1.08996 * 109.47460 * 305.49998 * 9 8 7 40 40 H 1.09000 * 109.46917 * 184.70775 * 10 9 8 41 41 H 1.09003 * 109.46573 * 304.70820 * 10 9 8 42 42 H 1.09002 * 109.47012 * 304.95211 * 12 11 10 43 43 H 1.09003 * 109.47144 * 64.95376 * 12 11 10 44 44 H 0.97004 * 120.00168 * 179.97438 * 16 15 13 45 45 H 1.07999 * 119.89691 * 359.69000 * 22 21 8 46 46 H 1.08000 * 119.86514 * 180.02562 * 23 22 21 47 47 H 1.08001 * 120.05679 * 180.15033 * 24 23 22 48 48 H 1.08003 * 119.96179 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 2.0400 -0.7213 -1.2492 6 1 3.1163 -0.8819 -1.1881 7 6 1.6763 0.0713 -2.5259 8 7 1.3860 -1.0021 -3.5011 9 6 0.3725 -0.5705 -4.4729 10 6 0.9354 0.5689 -5.3249 11 8 2.0318 0.0851 -6.1031 12 6 2.7035 1.0984 -6.8541 13 6 3.7565 0.4632 -7.7251 14 1 3.8454 -0.6123 -7.7678 15 6 4.6065 1.2551 -8.4677 16 7 4.4980 2.5647 -8.4163 17 14 5.9113 0.4678 -9.5479 18 1 5.3532 0.2273 -10.9029 19 1 7.0832 1.3743 -9.6491 20 1 6.3351 -0.8241 -8.9506 21 6 0.9509 -2.1259 -2.7878 22 6 0.2521 -3.2495 -3.2270 23 6 -0.0731 -4.2545 -2.3404 24 6 0.2919 -4.1554 -1.0101 25 6 0.9835 -3.0431 -0.5662 26 6 1.3084 -2.0338 -1.4481 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.5984 -1.7164 1.2999 34 1 3.1256 -0.8075 1.2013 35 1 1.7595 -0.1536 2.1365 36 1 0.7950 0.6905 -2.3587 37 1 2.5179 0.6803 -2.8559 38 1 0.1066 -1.4086 -5.1170 39 1 -0.5147 -0.2239 -3.9430 40 1 0.1568 0.9451 -5.9886 41 1 1.2785 1.3735 -4.6745 42 1 1.9828 1.6243 -7.4803 43 1 3.1748 1.8048 -6.1708 44 1 5.0962 3.1219 -8.9384 45 1 -0.0357 -3.3328 -4.2646 46 1 -0.6142 -5.1227 -2.6865 47 1 0.0376 -4.9456 -0.3192 48 1 1.2695 -2.9647 0.4723 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339130658.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:03 Heat of formation + Delta-G solvation = -37.374367 kcal Electronic energy + Delta-G solvation = -25487.968786 eV Core-core repulsion = 22120.799105 eV Total energy + Delta-G solvation = -3367.169681 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.18150 -38.82716 -38.21253 -37.22738 -34.94852 -32.88106 -31.52676 -30.06129 -29.53501 -28.18914 -28.12967 -27.82693 -24.56095 -24.31035 -23.74639 -22.29525 -21.48539 -19.63692 -18.65123 -17.87497 -17.43482 -17.09410 -16.81908 -16.38164 -16.24832 -16.00645 -15.38893 -15.10100 -15.06267 -14.79079 -14.61628 -14.29673 -13.89341 -13.72751 -13.64966 -13.31495 -13.13235 -13.02187 -12.99538 -12.82012 -12.70869 -12.53055 -12.41377 -12.27090 -12.19086 -12.05368 -11.89881 -11.56353 -11.38915 -11.30716 -11.13210 -10.88897 -10.76222 -10.23725 -9.63188 -8.57479 -8.33992 -6.46162 0.51502 0.52712 1.37614 1.40574 1.52866 2.33061 2.65247 2.94987 2.99045 3.14594 3.51290 3.54757 3.77587 3.94970 4.05203 4.08781 4.14081 4.23962 4.26383 4.31345 4.39351 4.44078 4.52912 4.58601 4.63716 4.71670 4.75067 4.78641 4.81844 4.84151 4.89442 4.93613 4.95822 5.07155 5.08069 5.15654 5.18547 5.23424 5.36486 5.43423 5.51062 5.51834 5.53530 5.61824 5.71249 5.86366 5.94561 6.06981 6.35525 6.52874 6.81458 7.25847 8.78289 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.016327 B = 0.003511 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.492533 B = 7971.989771 C = 8748.810355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.051 4.051 3 C -0.146 4.146 4 C -0.145 4.145 5 C -0.036 4.036 6 H 0.079 0.921 7 C 0.052 3.948 8 N -0.488 5.488 9 C 0.065 3.935 10 C 0.057 3.943 11 O -0.398 6.398 12 C 0.211 3.789 13 C -0.549 4.549 14 H 0.057 0.943 15 C 0.009 3.991 16 N -0.929 5.929 17 Si 0.982 3.018 18 H -0.266 1.266 19 H -0.272 1.272 20 H -0.268 1.268 21 C 0.079 3.921 22 C -0.159 4.159 23 C -0.096 4.096 24 C -0.150 4.150 25 C -0.087 4.087 26 C -0.135 4.135 27 H 0.057 0.943 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.056 0.944 41 H 0.041 0.959 42 H -0.015 1.015 43 H -0.015 1.015 44 H 0.271 0.729 45 H 0.115 0.885 46 H 0.145 0.855 47 H 0.150 0.850 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.864 -8.554 21.509 25.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.052 4.052 3 C -0.203 4.203 4 C -0.202 4.202 5 C -0.055 4.055 6 H 0.097 0.903 7 C -0.073 4.073 8 N -0.201 5.201 9 C -0.061 4.061 10 C -0.020 4.020 11 O -0.318 6.318 12 C 0.136 3.864 13 C -0.586 4.586 14 H 0.075 0.925 15 C -0.190 4.190 16 N -0.569 5.569 17 Si 0.804 3.196 18 H -0.191 1.191 19 H -0.197 1.197 20 H -0.192 1.192 21 C -0.020 4.020 22 C -0.181 4.181 23 C -0.115 4.115 24 C -0.169 4.169 25 C -0.105 4.105 26 C -0.138 4.138 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.003 0.997 43 H 0.003 0.997 44 H 0.080 0.920 45 H 0.133 0.867 46 H 0.163 0.837 47 H 0.168 0.832 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.269 -8.589 21.072 24.965 hybrid contribution 0.145 0.645 -0.826 1.058 sum -10.124 -7.944 20.246 23.990 Atomic orbital electron populations 1.21926 0.94158 1.02063 1.01494 1.20442 0.95924 0.95215 0.93593 1.21940 1.01165 0.95018 1.02177 1.22049 1.01024 1.00882 0.96254 1.20962 0.99149 0.91126 0.94235 0.90262 1.23368 1.01320 0.93063 0.89595 1.60289 1.39588 1.04970 1.15289 1.22278 0.91995 0.98215 0.93618 1.22572 0.89696 0.96123 0.93600 1.87902 1.46082 1.36054 1.61781 1.19795 0.90568 0.86929 0.89153 1.21368 1.16886 0.93971 1.26390 0.92454 1.25931 0.99686 0.95300 0.98072 1.70062 1.39802 1.04863 1.42132 0.85209 0.77565 0.78300 0.78499 1.19053 1.19680 1.19222 1.19953 0.95820 0.93703 0.92520 1.20678 1.02566 0.94295 1.00521 1.21144 0.98970 0.97866 0.93472 1.21325 1.00771 0.98712 0.96099 1.20867 0.97594 0.92239 0.99755 1.20490 1.02722 0.97910 0.92702 0.92372 0.93949 0.91360 0.91071 0.92712 0.93269 0.91360 0.92759 0.91286 0.90902 0.91026 0.89943 0.90371 0.92641 0.94113 0.99726 0.99722 0.91995 0.86688 0.83714 0.83239 0.83748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 7.86 71.98 0.57 -1.84 16 2 C -0.05 -0.93 0.55 -52.18 -0.03 -0.95 16 3 C -0.15 -2.59 8.15 71.98 0.59 -2.00 16 4 C -0.15 -2.11 8.25 71.98 0.59 -1.52 16 5 C -0.04 -0.88 2.47 -10.72 -0.03 -0.90 16 6 H 0.08 2.09 8.13 -2.39 -0.02 2.07 16 7 C 0.05 1.50 3.95 86.66 0.34 1.84 16 8 N -0.49 -16.33 5.00 -688.65 -3.44 -19.77 16 9 C 0.06 2.07 5.02 86.30 0.43 2.50 16 10 C 0.06 2.22 6.03 71.98 0.43 2.66 16 11 O -0.40 -20.55 10.27 -148.98 -1.53 -22.08 16 12 C 0.21 12.29 5.69 71.23 0.41 12.69 16 13 C -0.55 -33.95 9.43 25.60 0.24 -33.71 16 14 H 0.06 3.56 7.81 -2.91 -0.02 3.53 16 15 C 0.01 0.51 5.46 84.66 0.46 0.98 16 16 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 17 Si 0.98 45.61 29.54 68.60 2.03 47.64 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 21 C 0.08 2.32 5.96 38.29 0.23 2.55 16 22 C -0.16 -4.22 9.50 22.47 0.21 -4.00 16 23 C -0.10 -1.97 10.02 22.21 0.22 -1.75 16 24 C -0.15 -2.72 10.06 22.30 0.22 -2.49 16 25 C -0.09 -1.72 8.30 22.21 0.18 -1.54 16 26 C -0.14 -3.37 4.39 -19.49 -0.09 -3.45 16 27 H 0.06 1.05 6.11 -2.39 -0.01 1.04 16 28 H 0.04 0.81 6.49 -2.39 -0.02 0.80 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.05 0.96 6.79 -2.38 -0.02 0.94 16 33 H 0.07 0.91 4.77 -2.39 -0.01 0.90 16 34 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.07 1.88 5.36 -2.39 -0.01 1.86 16 37 H 0.07 2.35 8.05 -2.39 -0.02 2.33 16 38 H 0.08 2.66 7.06 -2.39 -0.02 2.65 16 39 H 0.08 2.03 7.96 -2.39 -0.02 2.01 16 40 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.04 1.54 7.16 -2.39 -0.02 1.52 16 42 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 43 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 44 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 45 H 0.12 3.03 7.25 -2.91 -0.02 3.01 16 46 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 47 H 0.15 1.78 8.06 -2.91 -0.02 1.75 16 48 H 0.15 2.19 5.22 -2.91 -0.02 2.17 16 Total: -1.00 -70.84 368.21 3.26 -67.57 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.93 Total: 14.16 kcal Atomic # 6 Polarization: -35.94 SS G_CDS: 5.00 Total: -30.95 kcal Atomic # 7 Polarization: -73.20 SS G_CDS: -3.16 Total: -76.35 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -1.53 Total: -22.08 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -70.84 3.26 -67.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339130658.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.199 kcal (2) G-P(sol) polarization free energy of solvation -70.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds