Wall clock time and date at job start Tue Mar 31 2020 07:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 112.90562 * 2 1 4 4 C 1.53782 * 113.61788 * 228.74552 * 2 1 3 5 5 C 1.53776 * 87.08018 * 270.88553 * 4 2 1 6 6 C 1.53779 * 87.08500 * 334.56711 * 5 4 2 7 7 H 1.09003 * 113.61772 * 270.80584 * 6 5 4 8 8 N 1.46897 * 113.61698 * 139.98023 * 6 5 4 9 9 C 1.46900 * 110.99746 * 104.50675 * 8 6 5 10 10 C 1.50703 * 109.46988 * 179.97438 * 9 8 6 11 11 C 1.38288 * 119.96901 * 90.00021 * 10 9 8 12 12 C 1.38246 * 120.11344 * 179.97438 * 11 10 9 13 13 C 1.38168 * 120.05246 * 0.02648 * 12 11 10 14 14 C 1.38711 * 119.94540 * 359.97438 * 13 12 11 15 15 O 1.35900 * 120.05589 * 180.02562 * 14 13 12 16 16 C 1.42895 * 117.00356 * 359.97438 * 15 14 13 17 17 C 1.52997 * 109.47503 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.47212 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47094 * 90.00289 * 22 20 18 24 24 H 1.48505 * 109.47195 * 210.00171 * 22 20 18 25 25 H 1.48493 * 109.47449 * 330.00136 * 22 20 18 26 26 C 1.38119 * 119.97493 * 270.30024 * 10 9 8 27 27 H 1.09000 * 109.47641 * 288.74661 * 1 2 3 28 28 H 1.09005 * 109.47286 * 48.75311 * 1 2 3 29 29 H 1.09003 * 109.47237 * 168.74705 * 1 2 3 30 30 H 1.09002 * 109.46808 * 191.24933 * 3 2 1 31 31 H 1.09000 * 109.47081 * 311.24778 * 3 2 1 32 32 H 1.09003 * 109.47033 * 71.25105 * 3 2 1 33 33 H 1.08997 * 113.61381 * 156.33595 * 4 2 1 34 34 H 1.09000 * 113.61200 * 25.43513 * 4 2 1 35 35 H 1.09000 * 113.61369 * 220.01324 * 5 4 2 36 36 H 1.09008 * 113.69418 * 89.12757 * 5 4 2 37 37 H 1.00897 * 110.99943 * 228.45834 * 8 6 5 38 38 H 1.09001 * 109.47653 * 60.00472 * 9 8 6 39 39 H 1.09000 * 109.47622 * 299.99888 * 9 8 6 40 40 H 1.07997 * 119.94649 * 0.02562 * 11 10 9 41 41 H 1.08001 * 119.97632 * 180.02562 * 12 11 10 42 42 H 1.08003 * 120.03103 * 180.02562 * 13 12 11 43 43 H 1.09002 * 109.46880 * 60.00021 * 16 15 14 44 44 H 1.08998 * 109.47064 * 300.00846 * 16 15 14 45 45 H 1.09002 * 109.47153 * 60.00043 * 17 16 15 46 46 H 1.09001 * 109.46832 * 300.00234 * 17 16 15 47 47 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 48 48 H 1.08004 * 120.02915 * 0.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1461 -0.9291 -1.0593 5 6 2.0930 -2.0425 0.0001 6 6 2.1460 -0.9290 1.0594 7 1 3.1590 -0.6507 1.3502 8 7 1.2679 -1.1710 2.2120 9 6 2.0436 -1.5973 3.3844 10 6 1.1112 -1.8349 4.5442 11 6 0.5598 -3.0876 4.7420 12 6 -0.2955 -3.3090 5.8053 13 6 -0.6019 -2.2784 6.6731 14 6 -0.0501 -1.0209 6.4769 15 8 -0.3495 -0.0057 7.3293 16 6 -1.2403 -0.3040 8.4061 17 6 -1.4572 0.9525 9.2516 18 6 -2.3962 0.6377 10.3875 19 1 -2.7977 -0.3590 10.4958 20 6 -2.7418 1.6219 11.2892 21 7 -2.2525 2.8354 11.1576 22 14 -3.9051 1.2314 12.6976 23 1 -3.1224 0.7752 13.8742 24 1 -4.6740 2.4500 13.0569 25 1 -4.8439 0.1587 12.2815 26 6 0.8032 -0.7998 5.4053 27 1 -0.3634 0.3303 0.9731 28 1 -0.3634 0.6776 -0.7727 29 1 -0.3634 -1.0079 -0.2005 30 1 3.1954 1.3517 -0.2005 31 1 1.6428 2.0078 -0.7727 32 1 1.9626 1.8726 0.9732 33 1 3.1591 -0.6499 -1.3488 34 1 1.4946 -1.1087 -1.9145 35 1 2.9717 -2.6874 0.0001 36 1 1.1574 -2.6019 0.0011 37 1 0.7141 -0.3542 2.4223 38 1 2.7603 -0.8197 3.6483 39 1 2.5768 -2.5191 3.1517 40 1 0.7983 -3.8946 4.0651 41 1 -0.7245 -4.2883 5.9579 42 1 -1.2698 -2.4518 7.5039 43 1 -0.8099 -1.0901 9.0265 44 1 -2.1960 -0.6407 8.0043 45 1 -1.8879 1.7383 8.6309 46 1 -0.5016 1.2895 9.6533 47 1 -2.4960 3.5279 11.7917 48 1 1.2299 0.1797 5.2474 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342227287.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:41 Heat of formation + Delta-G solvation = -14.918518 kcal Electronic energy + Delta-G solvation = -23845.105235 eV Core-core repulsion = 20478.909312 eV Total energy + Delta-G solvation = -3366.195922 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.25956 -39.68887 -37.42133 -34.66958 -33.37067 -31.10989 -30.82399 -30.45862 -29.12397 -27.72202 -26.04917 -24.91990 -23.57714 -22.50718 -22.22052 -21.63034 -20.16806 -18.53179 -17.55592 -16.38964 -16.18844 -15.71840 -15.60089 -15.39776 -15.30319 -15.08365 -14.51330 -14.22036 -13.80913 -13.64062 -13.45398 -13.07015 -12.83100 -12.63157 -12.42857 -12.33292 -12.27851 -12.11653 -11.75629 -11.58958 -11.39622 -11.32296 -11.25503 -10.93857 -10.87241 -10.73796 -10.50635 -10.32692 -10.26279 -9.85410 -9.66292 -9.30710 -8.80340 -8.51887 -8.45493 -7.81945 -6.11120 -4.15729 1.45639 1.71778 3.26892 3.32832 3.35728 3.77347 3.86916 4.14100 4.20535 4.31213 4.40586 4.60501 4.63037 4.83790 4.94183 5.00113 5.16943 5.21651 5.25323 5.27952 5.33550 5.40440 5.42778 5.49625 5.53377 5.54116 5.62273 5.67721 5.71234 5.74955 5.79569 5.84608 5.94726 6.03457 6.07080 6.15392 6.20840 6.22068 6.56560 6.57273 6.73319 6.73998 6.88231 7.01679 7.19556 7.50171 7.63223 7.81040 8.06513 8.23243 8.89834 9.48586 11.00477 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.022929 B = 0.002276 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.874167 B =12296.922835 C =13064.193912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.089 4.089 3 C -0.140 4.140 4 C -0.135 4.135 5 C -0.126 4.126 6 C 0.065 3.935 7 H 0.070 0.930 8 N -0.669 5.669 9 C 0.101 3.899 10 C -0.050 4.050 11 C -0.149 4.149 12 C -0.082 4.082 13 C -0.211 4.211 14 C 0.145 3.855 15 O -0.317 6.317 16 C 0.066 3.934 17 C 0.025 3.975 18 C -0.526 4.526 19 H 0.058 0.942 20 C 0.060 3.940 21 N -0.890 5.890 22 Si 0.899 3.101 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.157 4.157 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.345 0.655 38 H 0.038 0.962 39 H 0.079 0.921 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.129 0.871 43 H 0.050 0.950 44 H 0.050 0.950 45 H 0.028 0.972 46 H 0.027 0.973 47 H 0.263 0.737 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.499 -9.370 -23.245 26.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.090 4.090 3 C -0.197 4.197 4 C -0.172 4.172 5 C -0.164 4.164 6 C -0.045 4.045 7 H 0.088 0.912 8 N -0.301 5.301 9 C -0.027 4.027 10 C -0.051 4.051 11 C -0.168 4.168 12 C -0.100 4.100 13 C -0.230 4.230 14 C 0.098 3.902 15 O -0.230 6.230 16 C -0.008 4.008 17 C -0.012 4.012 18 C -0.564 4.564 19 H 0.076 0.924 20 C -0.142 4.142 21 N -0.528 5.528 22 Si 0.726 3.274 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 C -0.176 4.176 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.165 0.835 38 H 0.056 0.944 39 H 0.098 0.902 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.147 0.853 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.046 0.954 46 H 0.046 0.954 47 H 0.073 0.927 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.400 -9.605 -23.332 26.926 hybrid contribution -0.329 0.521 1.287 1.427 sum 9.070 -9.084 -22.045 25.510 Atomic orbital electron populations 1.21471 0.92428 1.02200 1.01818 1.22089 0.96408 0.94121 0.96355 1.21789 1.00336 0.95665 1.01930 1.22942 1.00744 0.96788 0.96773 1.22983 1.02344 0.96211 0.94871 1.23157 0.95223 0.96439 0.89651 0.91214 1.60721 1.24436 1.40565 1.04422 1.20888 0.93371 1.00535 0.87924 1.19408 0.97485 0.93206 0.95000 1.20753 1.00253 0.96747 0.99004 1.20898 0.96767 0.98249 0.94058 1.21390 1.05208 0.93236 1.03150 1.19144 0.93280 0.87570 0.90220 1.86165 1.63422 1.34675 1.38750 1.23320 0.90048 1.02199 0.85282 1.19123 0.97921 0.90852 0.93290 1.20971 1.28091 0.96810 1.10572 0.92361 1.24995 0.96329 0.94913 0.97993 1.69976 1.43999 1.01981 1.36815 0.86481 0.80774 0.77903 0.82193 1.20493 1.21038 1.19753 1.20267 1.02038 0.99683 0.95640 0.92053 0.92769 0.91866 0.92665 0.92405 0.92580 0.90385 0.91246 0.92055 0.89266 0.83467 0.94389 0.90228 0.86403 0.86213 0.85315 0.93163 0.93139 0.95410 0.95440 0.92704 0.85886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 8.46 37.16 0.31 -0.64 16 2 C -0.09 -0.67 1.28 -153.69 -0.20 -0.86 16 3 C -0.14 -1.00 9.20 37.16 0.34 -0.66 16 4 C -0.13 -0.91 7.20 -25.92 -0.19 -1.10 16 5 C -0.13 -0.96 7.53 -25.92 -0.20 -1.15 16 6 C 0.07 0.54 3.56 -66.90 -0.24 0.30 16 7 H 0.07 0.58 7.85 -51.93 -0.41 0.17 16 8 N -0.67 -6.45 6.00 -107.13 -0.64 -7.10 16 9 C 0.10 1.04 5.67 -4.97 -0.03 1.01 16 10 C -0.05 -0.64 5.39 -104.65 -0.56 -1.21 16 11 C -0.15 -1.87 9.70 -39.56 -0.38 -2.25 16 12 C -0.08 -1.09 10.04 -39.60 -0.40 -1.49 16 13 C -0.21 -3.35 9.04 -39.43 -0.36 -3.71 16 14 C 0.14 2.55 6.69 -39.21 -0.26 2.29 16 15 O -0.32 -6.60 10.14 -19.43 -0.20 -6.80 16 16 C 0.07 1.42 4.68 37.16 0.17 1.59 16 17 C 0.03 0.67 5.34 -27.88 -0.15 0.52 16 18 C -0.53 -14.73 9.11 -34.44 -0.31 -15.04 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 22 Si 0.90 21.32 29.54 -169.99 -5.02 16.29 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 26 C -0.16 -2.38 9.64 -39.43 -0.38 -2.76 16 27 H 0.06 0.52 6.79 -51.93 -0.35 0.17 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.52 7.34 -51.93 -0.38 0.14 16 30 H 0.05 0.36 7.94 -51.93 -0.41 -0.05 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.48 7.96 -51.93 -0.41 0.07 16 34 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.75 7.66 -51.92 -0.40 0.35 16 37 H 0.34 3.51 7.08 -39.29 -0.28 3.23 16 38 H 0.04 0.38 8.07 -51.93 -0.42 -0.04 16 39 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 40 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.13 2.02 6.30 -52.48 -0.33 1.69 16 43 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 44 H 0.05 1.04 7.66 -51.93 -0.40 0.65 16 45 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 48 H 0.12 1.77 8.06 -52.48 -0.42 1.34 16 LS Contribution 385.85 15.07 5.81 5.81 Total: -1.00 -29.57 385.85 -10.60 -40.17 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -8.38 Total: 0.97 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -2.92 Total: -23.56 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 0.09 Total: -32.89 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.20 Total: -6.80 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.57 -10.60 -40.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342227287.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.253 kcal (2) G-P(sol) polarization free energy of solvation -29.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds