Wall clock time and date at job start Tue Mar 31 2020 07:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 112.85100 * 2 1 4 4 C 1.53779 * 113.61731 * 228.68790 * 2 1 3 5 5 C 1.53779 * 87.08402 * 220.02348 * 4 2 1 6 6 C 1.53784 * 87.08045 * 25.43458 * 5 4 2 7 7 H 1.08994 * 113.61477 * 89.11454 * 6 5 4 8 8 N 1.46897 * 113.61420 * 220.02146 * 6 5 4 9 9 C 1.46903 * 111.00106 * 252.49983 * 8 6 5 10 10 C 1.50694 * 109.47135 * 180.02562 * 9 8 6 11 11 C 1.38292 * 119.97268 * 269.72016 * 10 9 8 12 12 C 1.38239 * 120.11232 * 179.72817 * 11 10 9 13 13 C 1.38170 * 120.05598 * 0.54837 * 12 11 10 14 14 C 1.38716 * 119.94158 * 359.72955 * 13 12 11 15 15 O 1.35903 * 120.04948 * 179.97438 * 14 13 12 16 16 C 1.42900 * 117.00558 * 0.02562 * 15 14 13 17 17 C 1.52995 * 109.46983 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.46755 * 180.02562 * 17 16 15 19 19 H 1.07995 * 120.00213 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99896 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00097 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00164 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46886 * 59.99861 * 22 20 18 24 24 H 1.48503 * 109.47313 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47358 * 299.99909 * 22 20 18 26 26 C 1.38127 * 119.97311 * 90.00129 * 10 9 8 27 27 H 1.08994 * 109.47401 * 288.80672 * 1 2 3 28 28 H 1.09006 * 109.46633 * 48.80711 * 1 2 3 29 29 H 1.09005 * 109.47442 * 168.79997 * 1 2 3 30 30 H 1.08994 * 109.46980 * 191.19023 * 3 2 1 31 31 H 1.09003 * 109.46911 * 311.19207 * 3 2 1 32 32 H 1.09005 * 109.46827 * 71.19060 * 3 2 1 33 33 H 1.09006 * 113.61280 * 334.57172 * 4 2 1 34 34 H 1.08999 * 113.61062 * 105.38926 * 4 2 1 35 35 H 1.09002 * 113.61557 * 270.88569 * 5 4 2 36 36 H 1.09004 * 113.61501 * 139.97990 * 5 4 2 37 37 H 1.00901 * 111.00239 * 16.45120 * 8 6 5 38 38 H 1.09001 * 109.46582 * 299.99847 * 9 8 6 39 39 H 1.08998 * 109.47315 * 59.99513 * 9 8 6 40 40 H 1.07995 * 119.94003 * 359.97438 * 11 10 9 41 41 H 1.07996 * 119.97301 * 180.29646 * 12 11 10 42 42 H 1.08004 * 120.03017 * 179.70288 * 13 12 11 43 43 H 1.08994 * 109.46597 * 299.99829 * 16 15 14 44 44 H 1.08998 * 109.46702 * 60.00201 * 16 15 14 45 45 H 1.09003 * 109.47267 * 299.99995 * 17 16 15 46 46 H 1.08995 * 109.47364 * 60.00095 * 17 16 15 47 47 H 0.96998 * 120.00115 * 180.02562 * 21 20 18 48 48 H 1.07999 * 120.02841 * 359.97121 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1461 -0.9302 -1.0583 5 6 3.1923 -1.3137 0.0014 6 6 2.1459 -0.9281 1.0604 7 1 1.4944 -1.7522 1.3507 8 7 2.7105 -0.2123 2.2122 9 6 2.7356 -1.0702 3.4045 10 6 3.3192 -0.3033 4.5630 11 6 4.6813 -0.3391 4.7991 12 6 5.2205 0.3678 5.8577 13 6 4.3978 1.1030 6.6894 14 6 3.0304 1.1359 6.4581 15 8 2.2192 1.8579 7.2751 16 6 2.8421 2.5596 8.3529 17 6 1.7775 3.3096 9.1560 18 6 2.4346 4.0501 10.2923 19 1 3.5043 3.9912 10.4283 20 6 1.6698 4.8019 11.1589 21 7 0.3670 4.8732 10.9936 22 14 2.4841 5.7191 12.5677 23 1 3.4681 6.6892 12.0237 24 1 1.4508 6.4473 13.3472 25 1 3.1807 4.7506 13.4520 26 6 2.4925 0.4300 5.3916 27 1 -0.3634 0.3313 0.9727 28 1 -0.3633 0.6769 -0.7734 29 1 -0.3634 -1.0081 -0.1996 30 1 3.1942 1.3532 -0.1994 31 1 1.6415 2.0075 -0.7734 32 1 1.9599 1.8734 0.9728 33 1 1.4945 -1.7550 -1.3471 34 1 2.5638 -0.4008 -1.9147 35 1 4.0711 -0.6688 0.0009 36 1 3.4443 -2.3742 0.0025 37 1 3.6317 0.1415 2.0020 38 1 1.7200 -1.3811 3.6497 39 1 3.3470 -1.9504 3.2059 40 1 5.3254 -0.9171 4.1531 41 1 6.2851 0.3422 6.0372 42 1 4.8189 1.6513 7.5192 43 1 3.3534 1.8486 9.0018 44 1 3.5642 3.2717 7.9536 45 1 1.2665 4.0206 8.5067 46 1 1.0550 2.5979 9.5552 47 1 -0.1709 5.4024 11.6030 48 1 1.4283 0.4544 5.2092 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342227295.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:44 Heat of formation + Delta-G solvation = -14.964587 kcal Electronic energy + Delta-G solvation = -23840.902667 eV Core-core repulsion = 20474.704747 eV Total energy + Delta-G solvation = -3366.197920 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.27158 -39.68132 -37.42149 -34.68575 -33.35252 -31.17960 -30.78303 -30.30494 -29.10735 -27.60137 -26.04574 -24.90829 -23.47507 -22.71037 -22.32210 -21.59116 -20.18814 -18.64907 -17.48977 -16.26785 -15.95568 -15.81960 -15.61966 -15.45831 -15.27662 -14.66369 -14.61564 -14.43955 -13.91363 -13.46278 -13.24808 -13.11367 -12.84176 -12.67110 -12.43425 -12.30350 -12.20570 -12.12078 -11.82668 -11.62073 -11.46324 -11.34946 -11.23117 -10.90208 -10.84837 -10.74605 -10.47678 -10.41552 -10.23214 -9.84191 -9.64807 -9.30240 -8.73491 -8.46768 -8.43238 -7.82132 -6.09256 -4.14016 1.46799 1.69627 3.29247 3.33564 3.35323 3.77503 3.87048 4.18558 4.23128 4.36390 4.41661 4.47656 4.60944 4.87024 4.98481 5.04676 5.17025 5.23704 5.26914 5.27002 5.30233 5.35930 5.46784 5.48471 5.51665 5.55629 5.60774 5.70816 5.72444 5.81978 5.85681 5.89082 6.01098 6.05075 6.08116 6.17202 6.21250 6.30568 6.56657 6.59116 6.69804 6.75232 6.84655 7.02135 7.20465 7.52050 7.65543 7.82673 8.08664 8.24975 8.91349 9.50102 11.02274 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.022713 B = 0.002282 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.486853 B =12264.839503 C =13046.759746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.075 4.075 3 C -0.122 4.122 4 C -0.135 4.135 5 C -0.170 4.170 6 C 0.075 3.925 7 H 0.095 0.905 8 N -0.668 5.668 9 C 0.102 3.898 10 C -0.051 4.051 11 C -0.167 4.167 12 C -0.081 4.081 13 C -0.211 4.211 14 C 0.145 3.855 15 O -0.316 6.316 16 C 0.065 3.935 17 C 0.025 3.975 18 C -0.527 4.527 19 H 0.057 0.943 20 C 0.060 3.940 21 N -0.889 5.889 22 Si 0.899 3.101 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.276 1.276 26 C -0.138 4.138 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.344 0.656 38 H 0.080 0.920 39 H 0.038 0.962 40 H 0.113 0.887 41 H 0.119 0.881 42 H 0.129 0.871 43 H 0.050 0.950 44 H 0.050 0.950 45 H 0.028 0.972 46 H 0.028 0.972 47 H 0.264 0.736 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.160 -13.680 -22.922 27.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.076 4.076 3 C -0.179 4.179 4 C -0.173 4.173 5 C -0.209 4.209 6 C -0.036 4.036 7 H 0.113 0.887 8 N -0.298 5.298 9 C -0.026 4.026 10 C -0.052 4.052 11 C -0.186 4.186 12 C -0.099 4.099 13 C -0.230 4.230 14 C 0.098 3.902 15 O -0.229 6.229 16 C -0.009 4.009 17 C -0.012 4.012 18 C -0.565 4.565 19 H 0.076 0.924 20 C -0.142 4.142 21 N -0.527 5.527 22 Si 0.727 3.273 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.158 4.158 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.164 0.836 38 H 0.098 0.902 39 H 0.056 0.944 40 H 0.131 0.869 41 H 0.137 0.863 42 H 0.147 0.853 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.046 0.954 46 H 0.046 0.954 47 H 0.074 0.926 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.173 -13.259 -22.645 26.746 hybrid contribution 1.413 -0.031 0.712 1.583 sum 6.586 -13.291 -21.933 26.478 Atomic orbital electron populations 1.21717 0.94210 1.01195 1.02122 1.21983 0.95301 0.95410 0.94876 1.21456 0.99602 0.94247 1.02627 1.22935 0.98171 0.99424 0.96732 1.23610 0.97850 1.01295 0.98137 1.23169 0.96356 0.95565 0.88485 0.88662 1.60385 1.29250 1.37142 1.03029 1.20875 1.00653 0.92918 0.88161 1.19401 0.93063 0.97273 0.95434 1.20761 0.94370 1.03493 0.99980 1.20834 0.99153 0.95616 0.94286 1.21390 0.93118 1.05213 1.03318 1.19210 0.89478 0.90976 0.90573 1.86178 1.36344 1.60025 1.40314 1.23320 0.98639 0.93655 0.85239 1.19118 0.93410 0.94939 0.93703 1.20933 0.93879 1.29965 1.11742 0.92436 1.24993 0.94840 0.96473 0.97898 1.69967 1.04618 1.40353 1.37808 0.86544 0.79004 0.79867 0.81929 1.20095 1.21114 1.20104 1.20260 1.00480 1.00024 0.94997 0.92019 0.92825 0.93018 0.93171 0.93139 0.90798 0.90289 0.91392 0.90008 0.91758 0.83636 0.90156 0.94416 0.86876 0.86300 0.85316 0.93187 0.93162 0.95378 0.95410 0.92645 0.85407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.19 37.16 0.34 -0.73 16 2 C -0.07 -0.59 1.37 -153.70 -0.21 -0.80 16 3 C -0.12 -1.03 8.44 37.16 0.31 -0.72 16 4 C -0.13 -0.91 7.20 -25.92 -0.19 -1.09 16 5 C -0.17 -1.16 7.35 -25.92 -0.19 -1.35 16 6 C 0.07 0.60 3.63 -66.90 -0.24 0.35 16 7 H 0.10 0.76 7.83 -51.93 -0.41 0.35 16 8 N -0.67 -6.27 5.53 -107.13 -0.59 -6.86 16 9 C 0.10 1.02 5.66 -4.98 -0.03 0.99 16 10 C -0.05 -0.65 5.39 -104.65 -0.56 -1.21 16 11 C -0.17 -2.00 9.70 -39.56 -0.38 -2.39 16 12 C -0.08 -1.06 10.04 -39.61 -0.40 -1.45 16 13 C -0.21 -3.35 9.04 -39.43 -0.36 -3.70 16 14 C 0.14 2.57 6.69 -39.22 -0.26 2.31 16 15 O -0.32 -6.64 10.14 -19.44 -0.20 -6.83 16 16 C 0.07 1.43 4.68 37.16 0.17 1.60 16 17 C 0.03 0.67 5.34 -27.88 -0.15 0.53 16 18 C -0.53 -14.79 9.11 -34.44 -0.31 -15.11 16 19 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 22 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 C -0.14 -2.14 9.64 -39.43 -0.38 -2.52 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.36 7.94 -51.93 -0.41 -0.05 16 30 H 0.05 0.39 7.35 -51.93 -0.38 0.01 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.75 7.77 -51.93 -0.40 0.34 16 33 H 0.08 0.49 7.96 -51.93 -0.41 0.07 16 34 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 35 H 0.08 0.55 7.34 -51.93 -0.38 0.17 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.34 3.13 8.11 -39.29 -0.32 2.81 16 38 H 0.08 0.80 8.07 -51.93 -0.42 0.38 16 39 H 0.04 0.33 8.08 -51.93 -0.42 -0.09 16 40 H 0.11 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 42 H 0.13 2.01 6.30 -52.48 -0.33 1.68 16 43 H 0.05 1.03 7.66 -51.93 -0.40 0.64 16 44 H 0.05 1.04 7.66 -51.93 -0.40 0.65 16 45 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 48 H 0.13 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 386.98 15.07 5.83 5.83 Total: -1.00 -29.75 386.98 -10.63 -40.38 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -8.45 Total: 0.70 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -2.93 Total: -23.67 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: 0.14 Total: -32.75 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -0.20 Total: -6.83 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.75 -10.63 -40.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342227295.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.413 kcal (2) G-P(sol) polarization free energy of solvation -29.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds