Wall clock time and date at job start Tue Mar 31 2020 07:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 112.85100 * 2 1 4 4 C 1.53779 * 113.61731 * 228.68790 * 2 1 3 5 5 C 1.53779 * 87.08402 * 220.02348 * 4 2 1 6 6 C 1.53784 * 87.08045 * 25.43458 * 5 4 2 7 7 H 1.08994 * 113.61477 * 89.11454 * 6 5 4 8 8 N 1.46897 * 113.61420 * 220.02146 * 6 5 4 9 9 C 1.46903 * 111.00106 * 252.49983 * 8 6 5 10 10 C 1.50694 * 109.47135 * 180.02562 * 9 8 6 11 11 C 1.38292 * 119.97268 * 269.72016 * 10 9 8 12 12 C 1.38239 * 120.11232 * 179.72817 * 11 10 9 13 13 C 1.38170 * 120.05598 * 0.54837 * 12 11 10 14 14 C 1.38716 * 119.94158 * 359.72955 * 13 12 11 15 15 O 1.35903 * 120.04948 * 179.97438 * 14 13 12 16 16 C 1.42900 * 117.00558 * 0.02562 * 15 14 13 17 17 C 1.52995 * 109.46983 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.46755 * 180.02562 * 17 16 15 19 19 H 1.07995 * 120.00213 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99896 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00097 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00164 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46886 * 59.99861 * 22 20 18 24 24 H 1.48503 * 109.47313 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47358 * 299.99909 * 22 20 18 26 26 C 1.38127 * 119.97311 * 90.00129 * 10 9 8 27 27 H 1.08994 * 109.47401 * 288.80672 * 1 2 3 28 28 H 1.09006 * 109.46633 * 48.80711 * 1 2 3 29 29 H 1.09005 * 109.47442 * 168.79997 * 1 2 3 30 30 H 1.08994 * 109.46980 * 191.19023 * 3 2 1 31 31 H 1.09003 * 109.46911 * 311.19207 * 3 2 1 32 32 H 1.09005 * 109.46827 * 71.19060 * 3 2 1 33 33 H 1.09006 * 113.61280 * 334.57172 * 4 2 1 34 34 H 1.08999 * 113.61062 * 105.38926 * 4 2 1 35 35 H 1.09002 * 113.61557 * 270.88569 * 5 4 2 36 36 H 1.09004 * 113.61501 * 139.97990 * 5 4 2 37 37 H 1.00901 * 111.00239 * 16.45120 * 8 6 5 38 38 H 1.09001 * 109.46582 * 299.99847 * 9 8 6 39 39 H 1.08998 * 109.47315 * 59.99513 * 9 8 6 40 40 H 1.07995 * 119.94003 * 359.97438 * 11 10 9 41 41 H 1.07996 * 119.97301 * 180.29646 * 12 11 10 42 42 H 1.08004 * 120.03017 * 179.70288 * 13 12 11 43 43 H 1.08994 * 109.46597 * 299.99829 * 16 15 14 44 44 H 1.08998 * 109.46702 * 60.00201 * 16 15 14 45 45 H 1.09003 * 109.47267 * 299.99995 * 17 16 15 46 46 H 1.08995 * 109.47364 * 60.00095 * 17 16 15 47 47 H 0.96998 * 120.00115 * 180.02562 * 21 20 18 48 48 H 1.07999 * 120.02841 * 359.97121 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1461 -0.9302 -1.0583 5 6 3.1923 -1.3137 0.0014 6 6 2.1459 -0.9281 1.0604 7 1 1.4944 -1.7522 1.3507 8 7 2.7105 -0.2123 2.2122 9 6 2.7356 -1.0702 3.4045 10 6 3.3192 -0.3033 4.5630 11 6 4.6813 -0.3391 4.7991 12 6 5.2205 0.3678 5.8577 13 6 4.3978 1.1030 6.6894 14 6 3.0304 1.1359 6.4581 15 8 2.2192 1.8579 7.2751 16 6 2.8421 2.5596 8.3529 17 6 1.7775 3.3096 9.1560 18 6 2.4346 4.0501 10.2923 19 1 3.5043 3.9912 10.4283 20 6 1.6698 4.8019 11.1589 21 7 0.3670 4.8732 10.9936 22 14 2.4841 5.7191 12.5677 23 1 3.4681 6.6892 12.0237 24 1 1.4508 6.4473 13.3472 25 1 3.1807 4.7506 13.4520 26 6 2.4925 0.4300 5.3916 27 1 -0.3634 0.3313 0.9727 28 1 -0.3633 0.6769 -0.7734 29 1 -0.3634 -1.0081 -0.1996 30 1 3.1942 1.3532 -0.1994 31 1 1.6415 2.0075 -0.7734 32 1 1.9599 1.8734 0.9728 33 1 1.4945 -1.7550 -1.3471 34 1 2.5638 -0.4008 -1.9147 35 1 4.0711 -0.6688 0.0009 36 1 3.4443 -2.3742 0.0025 37 1 3.6317 0.1415 2.0020 38 1 1.7200 -1.3811 3.6497 39 1 3.3470 -1.9504 3.2059 40 1 5.3254 -0.9171 4.1531 41 1 6.2851 0.3422 6.0372 42 1 4.8189 1.6513 7.5192 43 1 3.3534 1.8486 9.0018 44 1 3.5642 3.2717 7.9536 45 1 1.2665 4.0206 8.5067 46 1 1.0550 2.5979 9.5552 47 1 -0.1709 5.4024 11.6030 48 1 1.4283 0.4544 5.2092 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342227295.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:43 Heat of formation + Delta-G solvation = -30.436895 kcal Electronic energy + Delta-G solvation = -23841.573596 eV Core-core repulsion = 20474.704747 eV Total energy + Delta-G solvation = -3366.868849 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.14440 -40.71405 -38.72490 -35.67499 -35.33103 -32.59015 -31.99094 -31.15227 -30.49794 -28.26678 -27.22430 -26.55005 -24.26691 -23.49821 -23.33588 -23.17108 -21.56647 -19.44601 -18.89763 -18.08429 -17.02634 -16.95413 -16.86115 -16.55021 -16.44037 -16.33631 -15.33196 -15.31521 -14.90107 -14.43884 -14.32882 -14.28831 -14.11090 -13.98295 -13.78776 -13.28930 -13.09496 -13.04567 -12.85913 -12.79177 -12.59906 -12.56195 -12.44543 -12.37115 -12.21645 -11.86741 -11.60012 -11.57780 -11.47846 -11.39577 -11.02039 -10.89772 -10.62290 -9.80397 -9.20704 -9.05106 -8.27133 -6.41291 0.36017 0.54481 1.40263 1.44582 1.52581 2.27264 2.51553 2.77399 3.06938 3.40213 3.64511 3.73970 3.86722 3.92466 3.92914 4.03114 4.19889 4.23886 4.25607 4.33366 4.42447 4.44713 4.56680 4.63690 4.67018 4.72103 4.74609 4.81522 4.88199 4.90360 4.95706 5.06477 5.09481 5.12021 5.19099 5.27576 5.30528 5.36399 5.45285 5.45462 5.52882 5.54624 5.62130 5.65654 5.68554 5.91683 6.06749 6.19546 6.52321 6.58258 6.73252 7.28790 8.85880 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.022713 B = 0.002282 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.486853 B =12264.839503 C =13046.759746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.082 4.082 3 C -0.118 4.118 4 C -0.128 4.128 5 C -0.161 4.161 6 C 0.073 3.927 7 H 0.096 0.904 8 N -0.679 5.679 9 C 0.108 3.892 10 C -0.044 4.044 11 C -0.152 4.152 12 C -0.078 4.078 13 C -0.224 4.224 14 C 0.105 3.895 15 O -0.344 6.344 16 C 0.086 3.914 17 C 0.028 3.972 18 C -0.547 4.547 19 H 0.071 0.929 20 C 0.000 4.000 21 N -0.931 5.931 22 Si 0.977 3.023 23 H -0.263 1.263 24 H -0.282 1.282 25 H -0.263 1.263 26 C -0.152 4.152 27 H 0.043 0.957 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.347 0.653 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.151 0.849 41 H 0.151 0.849 42 H 0.125 0.875 43 H 0.060 0.940 44 H 0.059 0.941 45 H -0.003 1.003 46 H -0.002 1.002 47 H 0.267 0.733 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.924 -15.011 -24.133 29.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.083 4.083 3 C -0.176 4.176 4 C -0.166 4.166 5 C -0.200 4.200 6 C -0.037 4.037 7 H 0.114 0.886 8 N -0.310 5.310 9 C -0.020 4.020 10 C -0.045 4.045 11 C -0.171 4.171 12 C -0.095 4.095 13 C -0.243 4.243 14 C 0.059 3.941 15 O -0.259 6.259 16 C 0.012 3.988 17 C -0.009 4.009 18 C -0.585 4.585 19 H 0.089 0.911 20 C -0.198 4.198 21 N -0.570 5.570 22 Si 0.800 3.200 23 H -0.188 1.188 24 H -0.207 1.207 25 H -0.188 1.188 26 C -0.172 4.172 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.167 0.833 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.169 0.831 41 H 0.169 0.831 42 H 0.143 0.857 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.015 0.985 46 H 0.016 0.984 47 H 0.076 0.924 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.952 -14.611 -23.882 29.104 hybrid contribution 0.535 0.294 0.934 1.116 sum 8.487 -14.317 -22.948 28.348 Atomic orbital electron populations 1.21709 0.94531 1.01759 1.01165 1.22044 0.95119 0.95319 0.95816 1.21402 1.00147 0.94630 1.01405 1.22908 0.98056 0.99169 0.96477 1.23549 0.97502 1.01854 0.97072 1.23211 0.96918 0.95468 0.88149 0.88587 1.60332 1.29601 1.37647 1.03371 1.20833 1.00698 0.93154 0.87344 1.19711 0.93368 0.96080 0.95300 1.21206 0.94280 1.02192 0.99391 1.21218 1.00434 0.94328 0.93555 1.21497 0.92501 1.06125 1.04131 1.19541 0.90388 0.92637 0.91493 1.86084 1.37649 1.61272 1.40851 1.22838 0.96648 0.93791 0.85570 1.18962 0.94041 0.94067 0.93824 1.21363 0.94695 1.30211 1.12206 0.91079 1.26073 0.95395 0.97354 1.00988 1.70120 1.06439 1.41307 1.39172 0.85318 0.78046 0.78567 0.78018 1.18799 1.20743 1.18762 1.20390 1.00652 1.00821 0.95302 0.93784 0.92632 0.92045 0.92475 0.92946 0.92965 0.89511 0.91018 0.89749 0.90879 0.83319 0.90633 0.92148 0.83138 0.83130 0.85667 0.92225 0.92328 0.98464 0.98398 0.92412 0.86393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 9.19 71.98 0.66 -1.39 16 2 C -0.08 -1.19 1.37 -51.65 -0.07 -1.26 16 3 C -0.12 -1.91 8.44 71.98 0.61 -1.31 16 4 C -0.13 -1.42 7.20 31.12 0.22 -1.20 16 5 C -0.16 -1.73 7.35 31.12 0.23 -1.50 16 6 C 0.07 1.02 3.63 45.45 0.17 1.19 16 7 H 0.10 1.35 7.83 -2.39 -0.02 1.33 16 8 N -0.68 -11.63 5.53 -492.86 -2.72 -14.35 16 9 C 0.11 1.92 5.66 85.55 0.48 2.40 16 10 C -0.04 -1.04 5.39 -19.88 -0.11 -1.14 16 11 C -0.15 -3.12 9.70 22.28 0.22 -2.91 16 12 C -0.08 -1.81 10.04 22.25 0.22 -1.59 16 13 C -0.22 -6.97 9.04 22.37 0.20 -6.76 16 14 C 0.10 3.83 6.69 22.51 0.15 3.98 16 15 O -0.34 -15.34 10.14 -92.46 -0.94 -16.28 16 16 C 0.09 3.90 4.68 71.98 0.34 4.24 16 17 C 0.03 1.59 5.34 29.85 0.16 1.75 16 18 C -0.55 -31.40 9.11 25.60 0.23 -31.17 16 19 H 0.07 3.79 7.74 -2.91 -0.02 3.77 16 20 C 0.00 0.03 5.46 84.65 0.46 0.49 16 21 N -0.93 -57.49 13.29 21.45 0.28 -57.20 16 22 Si 0.98 43.91 29.54 68.60 2.03 45.93 16 23 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 26 C -0.15 -4.80 9.64 22.37 0.22 -4.59 16 27 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.06 0.79 7.94 -2.38 -0.02 0.78 16 30 H 0.06 0.82 7.35 -2.39 -0.02 0.80 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.05 1.06 7.77 -2.38 -0.02 1.05 16 33 H 0.09 0.85 7.96 -2.38 -0.02 0.83 16 34 H 0.07 0.76 8.10 -2.39 -0.02 0.74 16 35 H 0.08 0.89 7.34 -2.39 -0.02 0.87 16 36 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.35 5.50 8.11 -89.69 -0.73 4.78 16 38 H 0.08 1.43 8.07 -2.39 -0.02 1.41 16 39 H 0.06 0.83 8.08 -2.39 -0.02 0.81 16 40 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 41 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 42 H 0.13 3.89 6.30 -2.91 -0.02 3.87 16 43 H 0.06 2.54 7.66 -2.39 -0.02 2.52 16 44 H 0.06 2.51 7.66 -2.39 -0.02 2.49 16 45 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 46 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 47 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 48 H 0.12 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -67.01 386.98 3.23 -63.78 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.19 Total: 18.90 kcal Atomic # 6 Polarization: -45.16 SS G_CDS: 4.39 Total: -40.77 kcal Atomic # 7 Polarization: -69.11 SS G_CDS: -2.44 Total: -71.55 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.94 Total: -16.28 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -67.01 3.23 -63.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342227295.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.339 kcal (2) G-P(sol) polarization free energy of solvation -67.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds