Wall clock time and date at job start Tue Mar 31 2020 09:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46972 * 2 1 4 4 C 1.52996 * 109.46809 * 120.00034 * 2 1 3 5 5 C 1.53000 * 109.47298 * 64.77773 * 4 2 1 6 6 H 1.08997 * 109.54157 * 303.75926 * 5 4 2 7 7 C 1.53100 * 109.50726 * 63.86970 * 5 4 2 8 8 O 1.43020 * 109.26054 * 176.78598 * 7 5 4 9 9 C 1.43013 * 113.73322 * 301.32578 * 8 7 5 10 10 C 1.53101 * 109.26050 * 58.67087 * 9 8 7 11 11 N 1.47009 * 109.50811 * 183.64722 * 5 4 2 12 12 C 1.46906 * 110.99924 * 57.67414 * 11 5 4 13 13 C 1.50695 * 109.47048 * 176.75669 * 12 11 5 14 14 C 1.38636 * 119.75128 * 90.00555 * 13 12 11 15 15 C 1.37617 * 120.25233 * 179.97438 * 14 13 12 16 16 C 1.40710 * 119.74412 * 0.02562 * 15 14 13 17 17 C 1.41395 * 120.24488 * 180.02562 * 16 15 14 18 18 H 1.08008 * 119.99904 * 157.43301 * 17 16 15 19 19 C 1.39947 * 120.00204 * 337.43522 * 17 16 15 20 20 N 1.30824 * 119.99543 * 335.05984 * 19 17 16 21 21 Si 1.86802 * 120.00118 * 155.06309 * 19 17 16 22 22 H 1.48493 * 109.46866 * 94.98975 * 21 19 17 23 23 H 1.48501 * 109.46690 * 214.99284 * 21 19 17 24 24 H 1.48498 * 109.47064 * 334.98592 * 21 19 17 25 25 C 1.40718 * 119.51278 * 359.97438 * 16 15 14 26 26 C 1.37620 * 119.74287 * 0.02562 * 25 16 15 27 27 H 1.09004 * 109.47146 * 181.70778 * 1 2 3 28 28 H 1.08994 * 109.47049 * 301.71023 * 1 2 3 29 29 H 1.09001 * 109.46927 * 61.70777 * 1 2 3 30 30 H 1.08999 * 109.46855 * 239.99635 * 2 1 3 31 31 H 1.09000 * 109.46713 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47023 * 300.00023 * 3 2 1 33 33 H 1.09000 * 109.47109 * 60.00149 * 3 2 1 34 34 H 1.08997 * 109.47538 * 304.77568 * 4 2 1 35 35 H 1.09000 * 109.47099 * 184.77419 * 4 2 1 36 36 H 1.09001 * 109.50618 * 296.71489 * 7 5 4 37 37 H 1.09000 * 109.50841 * 56.80034 * 7 5 4 38 38 H 1.08999 * 109.50543 * 178.60349 * 9 8 7 39 39 H 1.09002 * 109.51112 * 298.69171 * 9 8 7 40 40 H 1.09006 * 109.50885 * 183.21056 * 10 9 8 41 41 H 1.09001 * 109.50619 * 63.08362 * 10 9 8 42 42 H 1.08996 * 109.46867 * 56.75835 * 12 11 5 43 43 H 1.09001 * 109.46789 * 296.75609 * 12 11 5 44 44 H 1.08004 * 119.87390 * 359.69214 * 14 13 12 45 45 H 1.08002 * 120.13044 * 179.97438 * 15 14 13 46 46 H 0.97006 * 119.99558 * 179.97438 * 20 19 17 47 47 H 1.08001 * 120.12977 * 179.97438 * 25 16 15 48 48 H 1.08005 * 119.87308 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6304 -2.1943 1.1906 6 1 0.5486 -2.2677 1.0795 7 6 2.3138 -2.8678 -0.0024 8 8 1.9873 -4.2602 -0.0087 9 6 2.3762 -4.9480 1.1834 10 6 1.6935 -4.2956 2.3884 11 7 2.0436 -2.8684 2.4300 12 6 1.4533 -2.2156 3.6063 13 6 1.8334 -2.9796 4.8483 14 6 2.9926 -2.6477 5.5324 15 6 3.3493 -3.3382 6.6681 16 6 2.5325 -4.3850 7.1340 17 6 2.8886 -5.1012 8.3001 18 1 2.1322 -5.6299 8.8612 19 6 4.2211 -5.1249 8.7271 20 7 5.1875 -4.9360 7.8658 21 14 4.6199 -5.4264 10.5270 22 1 4.8974 -6.8699 10.7374 23 1 5.8147 -4.6317 10.9091 24 1 3.4645 -5.0171 11.3653 25 6 1.3582 -4.7132 6.4317 26 6 1.0212 -4.0091 5.2983 27 1 -0.3634 -1.0272 0.0306 28 1 -0.3633 0.5401 0.8742 29 1 -0.3633 0.4871 -0.9049 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6085 -0.2593 2.1372 35 1 3.1266 -0.6478 1.2931 36 1 1.9665 -2.4084 -0.9278 37 1 3.3939 -2.7469 0.0809 38 1 2.0739 -5.9931 1.1156 39 1 3.4582 -4.8890 1.3012 40 1 2.0312 -4.7801 3.3046 41 1 0.6126 -4.4027 2.2965 42 1 0.3679 -2.2005 3.5069 43 1 1.8258 -1.1939 3.6799 44 1 3.6205 -1.8471 5.1701 45 1 4.2530 -3.0783 7.1993 46 1 6.1111 -4.9520 8.1619 47 1 0.7243 -5.5151 6.7802 48 1 0.1205 -4.2595 4.7573 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343547513.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:11 Heat of formation + Delta-G solvation = -41.566345 kcal Electronic energy + Delta-G solvation = -25362.020682 eV Core-core repulsion = 21994.669224 eV Total energy + Delta-G solvation = -3367.351459 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.84323 -37.65432 -36.72842 -35.27602 -33.57849 -31.36566 -30.47465 -29.26253 -28.05814 -27.30187 -26.58245 -25.43483 -22.93817 -22.78138 -21.00667 -20.37918 -19.92767 -19.33059 -17.31730 -16.35391 -16.13278 -15.49307 -15.34883 -14.95561 -14.67728 -14.44149 -14.09234 -13.84184 -13.52529 -13.44577 -13.27501 -13.17246 -12.54902 -12.44517 -12.30091 -11.96161 -11.93771 -11.66082 -11.52758 -11.48205 -11.28853 -11.05138 -10.91383 -10.77196 -10.69536 -10.53902 -10.46395 -10.32254 -10.19777 -9.63529 -9.40747 -9.32508 -9.06070 -7.96198 -7.46062 -7.33268 -6.85187 -4.34910 2.71695 3.04461 3.05612 3.07704 3.17361 3.90055 3.98451 4.13021 4.57701 4.73292 4.81504 4.88278 5.01434 5.21078 5.29581 5.33961 5.44824 5.49458 5.53874 5.58933 5.65880 5.68673 5.75591 5.81274 5.85448 5.86538 5.91110 5.97206 6.00035 6.07237 6.16672 6.22480 6.28465 6.34213 6.36045 6.38709 6.46885 6.94147 7.03586 7.24398 7.25958 7.31585 7.43022 7.46847 7.59299 7.86830 8.02611 8.12907 8.27479 8.61325 8.86487 8.96036 10.10331 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.021869 B = 0.003246 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.046836 B = 8625.206005 C = 9089.573446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C -0.146 4.146 4 C -0.108 4.108 5 C 0.047 3.953 6 H 0.046 0.954 7 C 0.069 3.931 8 O -0.392 6.392 9 C 0.062 3.938 10 C 0.022 3.978 11 N -0.526 5.526 12 C 0.121 3.879 13 C -0.219 4.219 14 C -0.074 4.074 15 C -0.175 4.175 16 C 0.116 3.884 17 C -0.466 4.466 18 H 0.078 0.922 19 C 0.082 3.918 20 N -0.780 5.780 21 Si 0.901 3.099 22 H -0.270 1.270 23 H -0.275 1.275 24 H -0.259 1.259 25 C -0.231 4.231 26 C -0.081 4.081 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.056 0.944 38 H 0.093 0.907 39 H 0.058 0.942 40 H 0.104 0.896 41 H 0.032 0.968 42 H 0.020 0.980 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.110 0.890 46 H 0.282 0.718 47 H 0.090 0.910 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.972 7.019 -12.678 15.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.117 4.117 3 C -0.203 4.203 4 C -0.146 4.146 5 C -0.062 4.062 6 H 0.064 0.936 7 C -0.008 4.008 8 O -0.310 6.310 9 C -0.014 4.014 10 C -0.106 4.106 11 N -0.251 5.251 12 C -0.005 4.005 13 C -0.220 4.220 14 C -0.093 4.093 15 C -0.194 4.194 16 C 0.113 3.887 17 C -0.495 4.495 18 H 0.096 0.904 19 C -0.138 4.138 20 N -0.404 5.404 21 Si 0.725 3.275 22 H -0.196 1.196 23 H -0.200 1.200 24 H -0.183 1.183 25 C -0.250 4.250 26 C -0.100 4.100 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.074 0.926 38 H 0.111 0.889 39 H 0.077 0.923 40 H 0.122 0.878 41 H 0.050 0.950 42 H 0.038 0.962 43 H 0.087 0.913 44 H 0.105 0.895 45 H 0.128 0.872 46 H 0.092 0.908 47 H 0.108 0.892 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.292 6.963 -12.830 14.964 hybrid contribution -0.447 -0.157 1.026 1.131 sum -3.740 6.806 -11.803 14.129 Atomic orbital electron populations 1.21911 0.95405 1.01918 1.01500 1.21169 0.95870 0.96223 0.98466 1.21823 1.01011 0.95906 1.01581 1.21686 1.01780 0.93306 0.97831 1.22344 0.97956 0.94422 0.91489 0.93591 1.22717 0.99235 0.81425 0.97391 1.87925 1.82722 1.21185 1.39189 1.22726 0.99225 0.95758 0.83722 1.22792 0.97846 0.89701 1.00297 1.62370 1.59426 1.02009 1.01307 1.20768 0.94901 0.97009 0.87817 1.18820 0.99927 1.03880 0.99394 1.20450 0.94900 0.98517 0.95473 1.21165 1.01898 0.97866 0.98487 1.17579 0.90321 0.89885 0.90889 1.19578 0.93335 1.28326 1.08211 0.90395 1.25916 0.96154 0.92484 0.99251 1.69880 1.01009 1.33975 1.35525 0.86427 0.78994 0.79048 0.83069 1.19552 1.19951 1.18314 1.20895 1.01777 1.03616 0.98728 1.20361 0.97272 0.95882 0.96449 0.92455 0.92709 0.92968 0.91160 0.92639 0.92908 0.92682 0.91178 0.91001 0.89087 0.92573 0.88854 0.92340 0.87804 0.95005 0.96160 0.91263 0.89541 0.87183 0.90757 0.89209 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.99 37.16 0.33 -1.06 16 2 C -0.10 -0.93 2.77 -90.62 -0.25 -1.18 16 3 C -0.15 -1.24 9.19 37.16 0.34 -0.90 16 4 C -0.11 -1.26 3.97 -26.73 -0.11 -1.37 16 5 C 0.05 0.63 1.90 -67.60 -0.13 0.50 16 6 H 0.05 0.65 6.36 -51.93 -0.33 0.32 16 7 C 0.07 0.90 5.94 37.21 0.22 1.12 16 8 O -0.39 -5.89 10.83 -35.23 -0.38 -6.27 16 9 C 0.06 0.93 7.01 37.21 0.26 1.19 16 10 C 0.02 0.36 4.87 -3.71 -0.02 0.34 16 11 N -0.53 -8.68 4.63 -227.77 -1.05 -9.73 16 12 C 0.12 2.13 4.72 -4.98 -0.02 2.11 16 13 C -0.22 -4.63 4.46 -104.33 -0.46 -5.09 16 14 C -0.07 -1.71 9.67 -39.66 -0.38 -2.10 16 15 C -0.17 -4.48 8.74 -38.88 -0.34 -4.82 16 16 C 0.12 3.04 5.58 -106.83 -0.60 2.45 16 17 C -0.47 -12.24 9.01 -37.74 -0.34 -12.58 16 18 H 0.08 1.98 7.96 -52.48 -0.42 1.56 16 19 C 0.08 2.03 4.98 -17.34 -0.09 1.94 16 20 N -0.78 -19.93 11.29 55.55 0.63 -19.30 16 21 Si 0.90 18.35 29.63 -169.99 -5.04 13.32 16 22 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 23 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 24 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 25 C -0.23 -5.57 9.80 -38.87 -0.38 -5.95 16 26 C -0.08 -1.76 7.76 -39.66 -0.31 -2.07 16 27 H 0.06 0.57 6.40 -51.93 -0.33 0.24 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.63 6.38 -51.93 -0.33 0.30 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.87 6.24 -51.93 -0.32 0.55 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.09 0.99 6.60 -51.93 -0.34 0.65 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.10 2.00 5.86 -51.93 -0.30 1.70 16 41 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.02 0.35 8.08 -51.93 -0.42 -0.07 16 43 H 0.07 1.16 6.31 -51.93 -0.33 0.83 16 44 H 0.09 1.85 8.06 -52.48 -0.42 1.42 16 45 H 0.11 2.92 6.29 -52.49 -0.33 2.59 16 46 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 47 H 0.09 2.07 8.06 -52.49 -0.42 1.64 16 48 H 0.08 1.61 8.03 -52.48 -0.42 1.19 16 LS Contribution 367.40 15.07 5.54 5.54 Total: -1.00 -26.79 367.40 -10.67 -37.45 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -8.09 Total: 6.45 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: -2.27 Total: -27.46 kcal Atomic # 7 Polarization: -28.61 SS G_CDS: -0.43 Total: -29.03 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.38 Total: -6.27 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.04 Total: 13.32 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -26.79 -10.67 -37.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343547513.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.114 kcal (2) G-P(sol) polarization free energy of solvation -26.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds