Wall clock time and date at job start Tue Mar 31 2020 09:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46972 * 2 1 4 4 C 1.52996 * 109.46809 * 120.00034 * 2 1 3 5 5 C 1.53000 * 109.47298 * 64.77773 * 4 2 1 6 6 H 1.08997 * 109.54157 * 303.75926 * 5 4 2 7 7 C 1.53100 * 109.50726 * 63.86970 * 5 4 2 8 8 O 1.43020 * 109.26054 * 176.78598 * 7 5 4 9 9 C 1.43013 * 113.73322 * 301.32578 * 8 7 5 10 10 C 1.53101 * 109.26050 * 58.67087 * 9 8 7 11 11 N 1.47009 * 109.50811 * 183.64722 * 5 4 2 12 12 C 1.46906 * 110.99924 * 57.67414 * 11 5 4 13 13 C 1.50695 * 109.47048 * 176.75669 * 12 11 5 14 14 C 1.38636 * 119.75128 * 90.00555 * 13 12 11 15 15 C 1.37617 * 120.25233 * 179.97438 * 14 13 12 16 16 C 1.40710 * 119.74412 * 0.02562 * 15 14 13 17 17 C 1.41395 * 120.24488 * 180.02562 * 16 15 14 18 18 H 1.08008 * 119.99904 * 157.43301 * 17 16 15 19 19 C 1.39947 * 120.00204 * 337.43522 * 17 16 15 20 20 N 1.30824 * 119.99543 * 335.05984 * 19 17 16 21 21 Si 1.86802 * 120.00118 * 155.06309 * 19 17 16 22 22 H 1.48493 * 109.46866 * 94.98975 * 21 19 17 23 23 H 1.48501 * 109.46690 * 214.99284 * 21 19 17 24 24 H 1.48498 * 109.47064 * 334.98592 * 21 19 17 25 25 C 1.40718 * 119.51278 * 359.97438 * 16 15 14 26 26 C 1.37620 * 119.74287 * 0.02562 * 25 16 15 27 27 H 1.09004 * 109.47146 * 181.70778 * 1 2 3 28 28 H 1.08994 * 109.47049 * 301.71023 * 1 2 3 29 29 H 1.09001 * 109.46927 * 61.70777 * 1 2 3 30 30 H 1.08999 * 109.46855 * 239.99635 * 2 1 3 31 31 H 1.09000 * 109.46713 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47023 * 300.00023 * 3 2 1 33 33 H 1.09000 * 109.47109 * 60.00149 * 3 2 1 34 34 H 1.08997 * 109.47538 * 304.77568 * 4 2 1 35 35 H 1.09000 * 109.47099 * 184.77419 * 4 2 1 36 36 H 1.09001 * 109.50618 * 296.71489 * 7 5 4 37 37 H 1.09000 * 109.50841 * 56.80034 * 7 5 4 38 38 H 1.08999 * 109.50543 * 178.60349 * 9 8 7 39 39 H 1.09002 * 109.51112 * 298.69171 * 9 8 7 40 40 H 1.09006 * 109.50885 * 183.21056 * 10 9 8 41 41 H 1.09001 * 109.50619 * 63.08362 * 10 9 8 42 42 H 1.08996 * 109.46867 * 56.75835 * 12 11 5 43 43 H 1.09001 * 109.46789 * 296.75609 * 12 11 5 44 44 H 1.08004 * 119.87390 * 359.69214 * 14 13 12 45 45 H 1.08002 * 120.13044 * 179.97438 * 15 14 13 46 46 H 0.97006 * 119.99558 * 179.97438 * 20 19 17 47 47 H 1.08001 * 120.12977 * 179.97438 * 25 16 15 48 48 H 1.08005 * 119.87308 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6304 -2.1943 1.1906 6 1 0.5486 -2.2677 1.0795 7 6 2.3138 -2.8678 -0.0024 8 8 1.9873 -4.2602 -0.0087 9 6 2.3762 -4.9480 1.1834 10 6 1.6935 -4.2956 2.3884 11 7 2.0436 -2.8684 2.4300 12 6 1.4533 -2.2156 3.6063 13 6 1.8334 -2.9796 4.8483 14 6 2.9926 -2.6477 5.5324 15 6 3.3493 -3.3382 6.6681 16 6 2.5325 -4.3850 7.1340 17 6 2.8886 -5.1012 8.3001 18 1 2.1322 -5.6299 8.8612 19 6 4.2211 -5.1249 8.7271 20 7 5.1875 -4.9360 7.8658 21 14 4.6199 -5.4264 10.5270 22 1 4.8974 -6.8699 10.7374 23 1 5.8147 -4.6317 10.9091 24 1 3.4645 -5.0171 11.3653 25 6 1.3582 -4.7132 6.4317 26 6 1.0212 -4.0091 5.2983 27 1 -0.3634 -1.0272 0.0306 28 1 -0.3633 0.5401 0.8742 29 1 -0.3633 0.4871 -0.9049 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6085 -0.2593 2.1372 35 1 3.1266 -0.6478 1.2931 36 1 1.9665 -2.4084 -0.9278 37 1 3.3939 -2.7469 0.0809 38 1 2.0739 -5.9931 1.1156 39 1 3.4582 -4.8890 1.3012 40 1 2.0312 -4.7801 3.3046 41 1 0.6126 -4.4027 2.2965 42 1 0.3679 -2.2005 3.5069 43 1 1.8258 -1.1939 3.6799 44 1 3.6205 -1.8471 5.1701 45 1 4.2530 -3.0783 7.1993 46 1 6.1111 -4.9520 8.1619 47 1 0.7243 -5.5151 6.7802 48 1 0.1205 -4.2595 4.7573 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343547513.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:11 Heat of formation + Delta-G solvation = -55.053187 kcal Electronic energy + Delta-G solvation = -25362.605516 eV Core-core repulsion = 21994.669224 eV Total energy + Delta-G solvation = -3367.936292 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.06168 -39.39157 -37.68270 -36.65452 -35.30596 -32.54467 -32.09920 -31.11470 -29.55379 -28.00200 -27.68832 -26.97435 -24.50015 -23.91529 -22.82688 -21.77036 -21.26850 -20.41582 -19.22144 -17.49230 -17.36073 -17.12295 -16.65139 -16.21475 -15.86700 -15.74104 -15.53325 -15.33563 -14.98808 -14.76906 -14.38313 -14.22075 -14.17172 -13.81165 -13.56054 -13.33188 -13.12589 -13.05667 -12.86090 -12.72258 -12.58780 -12.42736 -12.36062 -12.21608 -11.98448 -11.75428 -11.54327 -11.43430 -11.32732 -11.25929 -11.22370 -10.92815 -10.52666 -9.38707 -9.33284 -9.10631 -8.70265 -6.30736 0.94503 1.14584 1.37069 1.46583 1.54430 2.19457 2.60415 2.87968 3.01760 3.73343 3.79546 3.91101 3.97050 4.09714 4.13853 4.19436 4.21465 4.29102 4.36445 4.46064 4.54102 4.58163 4.61355 4.66421 4.73255 4.78843 4.83570 4.88961 4.94890 4.98569 5.02717 5.04249 5.07231 5.13325 5.15572 5.18408 5.34896 5.36494 5.45898 5.50032 5.53158 5.70262 5.92833 6.03166 6.10048 6.12966 6.26616 6.28643 6.38719 6.69978 6.93619 7.04379 8.27952 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.021869 B = 0.003246 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.046836 B = 8625.206005 C = 9089.573446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.103 4.103 5 C 0.050 3.950 6 H 0.045 0.955 7 C 0.067 3.933 8 O -0.399 6.399 9 C 0.067 3.933 10 C 0.025 3.975 11 N -0.537 5.537 12 C 0.128 3.872 13 C -0.204 4.204 14 C -0.079 4.079 15 C -0.197 4.197 16 C 0.086 3.914 17 C -0.506 4.506 18 H 0.074 0.926 19 C 0.042 3.958 20 N -0.814 5.814 21 Si 0.975 3.025 22 H -0.261 1.261 23 H -0.265 1.265 24 H -0.260 1.260 25 C -0.246 4.246 26 C -0.076 4.076 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.117 0.883 37 H 0.055 0.945 38 H 0.110 0.890 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.033 0.967 42 H 0.029 0.971 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.092 0.908 46 H 0.290 0.710 47 H 0.093 0.907 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.449 7.982 -14.203 16.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.202 4.202 4 C -0.141 4.141 5 C -0.058 4.058 6 H 0.063 0.937 7 C -0.009 4.009 8 O -0.318 6.318 9 C -0.010 4.010 10 C -0.103 4.103 11 N -0.262 5.262 12 C 0.002 3.998 13 C -0.205 4.205 14 C -0.098 4.098 15 C -0.217 4.217 16 C 0.083 3.917 17 C -0.534 4.534 18 H 0.092 0.908 19 C -0.174 4.174 20 N -0.439 5.439 21 Si 0.796 3.204 22 H -0.186 1.186 23 H -0.189 1.189 24 H -0.183 1.183 25 C -0.266 4.266 26 C -0.095 4.095 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.135 0.865 37 H 0.073 0.927 38 H 0.128 0.872 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.051 0.949 42 H 0.047 0.953 43 H 0.099 0.901 44 H 0.119 0.881 45 H 0.110 0.890 46 H 0.100 0.900 47 H 0.111 0.889 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.777 7.931 -14.375 16.847 hybrid contribution -0.364 -0.400 1.333 1.438 sum -4.141 7.531 -13.043 15.620 Atomic orbital electron populations 1.21899 0.95156 1.01495 1.02060 1.21143 0.95984 0.96623 0.97473 1.21809 1.01079 0.95243 1.02053 1.21650 1.01433 0.92131 0.98846 1.22415 0.97949 0.95298 0.90118 0.93682 1.22895 0.99268 0.80555 0.98217 1.87922 1.82765 1.22216 1.38871 1.22691 0.98650 0.96562 0.83078 1.22693 0.97942 0.89874 0.99819 1.62318 1.59678 1.02060 1.02143 1.20677 0.95450 0.96963 0.86720 1.19192 0.98455 1.02913 0.99979 1.20661 0.95743 0.98589 0.94814 1.21120 1.01803 0.98910 0.99835 1.17897 0.91455 0.90584 0.91731 1.19805 0.94342 1.29991 1.09310 0.90805 1.26733 0.95408 0.91750 1.03546 1.69916 1.01611 1.34778 1.37552 0.85306 0.78772 0.79315 0.77026 1.18593 1.18908 1.18347 1.21077 1.01564 1.04325 0.99618 1.20592 0.98009 0.95355 0.95554 0.93256 0.93101 0.91599 0.90236 0.92564 0.91650 0.93044 0.91915 0.91505 0.86474 0.92670 0.87209 0.92936 0.90738 0.94908 0.95325 0.90130 0.88052 0.88974 0.89983 0.88905 0.87668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 8.99 71.98 0.65 -1.71 16 2 C -0.09 -1.50 2.77 -10.79 -0.03 -1.53 16 3 C -0.14 -2.07 9.19 71.98 0.66 -1.41 16 4 C -0.10 -2.17 3.97 30.59 0.12 -2.05 16 5 C 0.05 1.25 1.90 44.93 0.09 1.34 16 6 H 0.05 1.17 6.36 -2.39 -0.02 1.15 16 7 C 0.07 1.57 5.94 72.02 0.43 2.00 16 8 O -0.40 -11.11 10.83 -148.98 -1.61 -12.73 16 9 C 0.07 1.91 7.01 72.02 0.50 2.41 16 10 C 0.02 0.81 4.87 86.32 0.42 1.23 16 11 N -0.54 -16.88 4.63 -874.53 -4.05 -20.93 16 12 C 0.13 4.30 4.72 85.55 0.40 4.71 16 13 C -0.20 -8.52 4.46 -19.68 -0.09 -8.61 16 14 C -0.08 -3.68 9.67 22.22 0.21 -3.46 16 15 C -0.20 -10.47 8.74 22.73 0.20 -10.27 16 16 C 0.09 4.68 5.58 -21.29 -0.12 4.56 16 17 C -0.51 -27.66 9.01 23.46 0.21 -27.45 16 18 H 0.07 3.92 7.96 -2.91 -0.02 3.90 16 19 C 0.04 2.16 4.98 85.26 0.42 2.58 16 20 N -0.81 -42.87 11.29 21.83 0.25 -42.63 16 21 Si 0.98 38.29 29.63 68.60 2.03 40.32 16 22 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 23 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 24 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 25 C -0.25 -12.19 9.80 22.73 0.22 -11.97 16 26 C -0.08 -3.31 7.76 22.22 0.17 -3.14 16 27 H 0.05 0.86 6.40 -2.39 -0.02 0.85 16 28 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 1.15 6.38 -2.39 -0.02 1.14 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 33 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 1.42 6.24 -2.39 -0.01 1.41 16 35 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.12 2.14 6.60 -2.39 -0.02 2.12 16 37 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 39 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.07 2.86 5.86 -2.38 -0.01 2.85 16 41 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.03 0.93 8.08 -2.39 -0.02 0.91 16 43 H 0.08 2.54 6.31 -2.39 -0.02 2.53 16 44 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 45 H 0.09 5.13 6.29 -2.91 -0.02 5.11 16 46 H 0.29 13.72 8.30 -92.70 -0.77 12.95 16 47 H 0.09 4.40 8.06 -2.91 -0.02 4.38 16 48 H 0.11 4.02 8.03 -2.91 -0.02 4.00 16 Total: -1.00 -58.85 367.40 2.02 -56.83 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: 0.92 Total: 31.91 kcal Atomic # 6 Polarization: -57.25 SS G_CDS: 4.48 Total: -52.77 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: -3.80 Total: -63.56 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -1.61 Total: -12.73 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 2.03 Total: 40.32 kcal Total: -58.85 2.02 -56.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343547513.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.775 kcal (2) G-P(sol) polarization free energy of solvation -58.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds