Wall clock time and date at job start Tue Mar 31 2020 09:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46919 * 2 1 4 4 C 1.53001 * 109.46940 * 119.99271 * 2 1 3 5 5 C 1.52997 * 109.47071 * 65.67689 * 4 2 1 6 6 H 1.09005 * 109.54217 * 174.08036 * 5 4 2 7 7 C 1.53098 * 109.50491 * 53.97294 * 5 4 2 8 8 O 1.43021 * 109.26062 * 183.21691 * 7 5 4 9 9 C 1.43010 * 113.73558 * 58.66540 * 8 7 5 10 10 C 1.53099 * 109.26361 * 301.33365 * 9 8 7 11 11 N 1.47011 * 109.50694 * 294.19015 * 5 4 2 12 12 C 1.46893 * 110.99984 * 302.32288 * 11 5 4 13 13 C 1.50693 * 109.47624 * 300.46394 * 12 11 5 14 14 C 1.38642 * 119.75039 * 275.51731 * 13 12 11 15 15 C 1.37609 * 120.24882 * 180.25844 * 14 13 12 16 16 C 1.40716 * 119.74639 * 359.46370 * 15 14 13 17 17 C 1.41400 * 120.24647 * 180.25877 * 16 15 14 18 18 H 1.08002 * 119.99988 * 28.80699 * 17 16 15 19 19 C 1.39944 * 119.99968 * 208.81328 * 17 16 15 20 20 N 1.30826 * 120.00188 * 12.35057 * 19 17 16 21 21 Si 1.86800 * 120.00000 * 192.35087 * 19 17 16 22 22 H 1.48505 * 109.46942 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47220 * 120.00002 * 21 19 17 24 24 H 1.48505 * 109.46941 * 240.00135 * 21 19 17 25 25 C 1.40715 * 119.51335 * 0.27980 * 16 15 14 26 26 C 1.37625 * 119.73963 * 359.97438 * 25 16 15 27 27 H 1.09000 * 109.47349 * 291.63781 * 1 2 3 28 28 H 1.08995 * 109.46739 * 51.64411 * 1 2 3 29 29 H 1.09002 * 109.46567 * 171.64043 * 1 2 3 30 30 H 1.08990 * 109.47530 * 239.99732 * 2 1 3 31 31 H 1.08997 * 109.47103 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46754 * 299.99862 * 3 2 1 33 33 H 1.09004 * 109.47493 * 59.99517 * 3 2 1 34 34 H 1.09000 * 109.47638 * 305.67760 * 4 2 1 35 35 H 1.09007 * 109.47133 * 185.67777 * 4 2 1 36 36 H 1.09001 * 109.50865 * 63.28434 * 7 5 4 37 37 H 1.09001 * 109.54480 * 303.17242 * 7 5 4 38 38 H 1.09003 * 109.50717 * 181.39671 * 9 8 7 39 39 H 1.08999 * 109.54269 * 61.29093 * 9 8 7 40 40 H 1.08994 * 109.50561 * 296.91468 * 10 9 8 41 41 H 1.09000 * 109.51145 * 176.78245 * 10 9 8 42 42 H 1.09006 * 109.47097 * 180.45796 * 12 11 5 43 43 H 1.09001 * 109.47007 * 60.46347 * 12 11 5 44 44 H 1.08004 * 119.87297 * 0.02562 * 14 13 12 45 45 H 1.07998 * 120.12770 * 179.74230 * 15 14 13 46 46 H 0.96996 * 119.99736 * 180.02562 * 20 19 17 47 47 H 1.07998 * 120.13325 * 180.02562 * 25 16 15 48 48 H 1.07999 * 119.87350 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.6498 -2.1989 1.1802 6 1 2.1012 -2.7346 2.0153 7 6 2.1455 -2.7973 -0.1389 8 8 1.7135 -4.1575 -0.2317 9 6 0.2937 -4.3162 -0.1678 10 6 -0.2209 -3.7331 1.1510 11 7 0.1867 -2.3241 1.2499 12 6 -0.3363 -1.7098 2.4775 13 6 0.2736 -2.3872 3.6775 14 6 -0.2883 -3.5563 4.1671 15 6 0.2571 -4.1805 5.2655 16 6 1.3961 -3.6340 5.8852 17 6 1.9685 -4.2696 7.0112 18 1 1.8772 -5.3390 7.1320 19 6 2.6530 -3.5131 7.9690 20 7 2.5618 -2.2080 7.9593 21 14 3.6972 -4.3666 9.2616 22 1 3.6343 -5.8362 9.0572 23 1 5.1049 -3.9095 9.1417 24 1 3.1817 -4.0329 10.6137 25 6 1.9611 -2.4499 5.3765 26 6 1.3957 -1.8398 4.2801 27 1 -0.3634 0.3789 0.9552 28 1 -0.3632 0.6377 -0.8058 29 1 -0.3632 -1.0168 -0.1494 30 1 1.8934 -0.5138 -0.8899 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9565 0.8899 34 1 1.5960 -0.2693 2.1364 35 1 3.1253 -0.6339 1.3017 36 1 3.2344 -2.7584 -0.1698 37 1 1.7372 -2.2279 -0.9739 38 1 0.0431 -5.3757 -0.2197 39 1 -0.1698 -3.7913 -1.0032 40 1 0.2006 -4.2934 1.9856 41 1 -1.3084 -3.8002 1.1790 42 1 -1.4200 -1.8237 2.5076 43 1 -0.0820 -0.6500 2.4903 44 1 -1.1595 -3.9766 3.6868 45 1 -0.1846 -5.0889 5.6477 46 1 3.0366 -1.6837 8.6229 47 1 2.8355 -2.0219 5.8441 48 1 1.8278 -0.9312 3.8876 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343547514.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:14 Heat of formation + Delta-G solvation = -27.788847 kcal Electronic energy + Delta-G solvation = -26357.823995 eV Core-core repulsion = 22991.069974 eV Total energy + Delta-G solvation = -3366.754021 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.14415 -37.63311 -36.53614 -34.95772 -33.39893 -31.30057 -30.44220 -29.31374 -28.23134 -26.82943 -26.47550 -25.22329 -23.13072 -22.71466 -20.95988 -20.63380 -20.20217 -18.47431 -17.32373 -16.34992 -16.00803 -15.36349 -15.31179 -14.97559 -14.85586 -14.20660 -14.08785 -13.88753 -13.60639 -13.33407 -13.13784 -12.58138 -12.43689 -12.21423 -12.04890 -11.89848 -11.68033 -11.62487 -11.37290 -11.30694 -11.20249 -11.05072 -10.88194 -10.65873 -10.62225 -10.46968 -10.34652 -10.15781 -10.06408 -9.68944 -9.43898 -9.21371 -9.13525 -7.76728 -7.49034 -7.28738 -6.75016 -4.40432 2.70074 3.00311 3.05860 3.11038 3.13238 3.91881 4.03814 4.26885 4.62330 4.88468 5.07839 5.15704 5.22476 5.25560 5.35663 5.48687 5.57095 5.64117 5.68423 5.76944 5.80382 5.84406 5.85973 5.92667 5.97346 6.05676 6.09478 6.15238 6.25732 6.27045 6.28277 6.33017 6.40409 6.45005 6.53542 6.65303 6.89700 6.90323 7.04884 7.18185 7.28141 7.32668 7.40548 7.44441 7.57618 7.79936 8.02295 8.05837 8.26518 8.60903 8.86816 8.93056 10.19446 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.017876 B = 0.004173 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.981678 B = 6707.890723 C = 7300.711832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.110 4.110 5 C 0.049 3.951 6 H 0.066 0.934 7 C 0.066 3.934 8 O -0.388 6.388 9 C 0.066 3.934 10 C 0.009 3.991 11 N -0.514 5.514 12 C 0.107 3.893 13 C -0.244 4.244 14 C -0.083 4.083 15 C -0.223 4.223 16 C 0.113 3.887 17 C -0.464 4.464 18 H 0.076 0.924 19 C 0.075 3.925 20 N -0.800 5.800 21 Si 0.908 3.092 22 H -0.261 1.261 23 H -0.272 1.272 24 H -0.274 1.274 25 C -0.159 4.159 26 C -0.092 4.092 27 H 0.048 0.952 28 H 0.030 0.970 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.090 0.910 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.279 0.721 47 H 0.116 0.884 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.970 3.086 -13.351 13.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.109 4.109 3 C -0.206 4.206 4 C -0.148 4.148 5 C -0.060 4.060 6 H 0.084 0.916 7 C -0.010 4.010 8 O -0.306 6.306 9 C -0.011 4.011 10 C -0.120 4.120 11 N -0.238 5.238 12 C -0.019 4.019 13 C -0.247 4.247 14 C -0.101 4.101 15 C -0.243 4.243 16 C 0.111 3.889 17 C -0.495 4.495 18 H 0.094 0.906 19 C -0.142 4.142 20 N -0.426 5.426 21 Si 0.733 3.267 22 H -0.185 1.185 23 H -0.197 1.197 24 H -0.200 1.200 25 C -0.179 4.179 26 C -0.111 4.111 27 H 0.067 0.933 28 H 0.049 0.951 29 H 0.114 0.886 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.108 0.892 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.102 0.898 45 H 0.108 0.892 46 H 0.090 0.910 47 H 0.134 0.866 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.973 3.394 -13.653 14.206 hybrid contribution 0.613 -0.447 1.639 1.806 sum -1.360 2.947 -12.013 12.444 Atomic orbital electron populations 1.22208 0.94506 1.04181 1.00098 1.21095 0.97049 0.94874 0.97887 1.21886 1.00455 0.96925 1.01306 1.21747 1.00201 0.94024 0.98781 1.22203 0.89195 0.96614 0.97994 0.91616 1.22829 0.99265 0.82378 0.96573 1.87958 1.22057 1.26376 1.94208 1.22630 0.81366 1.00611 0.96501 1.22842 1.00609 0.90391 0.98128 1.62995 1.10027 1.14280 1.36454 1.20990 0.97754 0.97838 0.85334 1.19645 1.02285 1.00359 1.02370 1.20373 0.98095 0.95407 0.96267 1.21019 0.99499 1.02945 1.00826 1.17635 0.89063 0.91330 0.90912 1.19623 1.29925 0.95390 1.04523 0.90575 1.25879 0.95066 0.94687 0.98569 1.69805 1.34317 1.06137 1.32385 0.86260 0.79808 0.80727 0.79916 1.18473 1.19750 1.19987 1.21322 1.01500 0.98826 0.96207 1.20599 0.95971 0.98086 0.96416 0.93292 0.95106 0.88592 0.91691 0.93240 0.93252 0.92915 0.90598 0.92034 0.89318 0.92326 0.89198 0.93075 0.92176 0.90513 0.91867 0.90672 0.89774 0.89208 0.91027 0.86623 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 7.73 37.16 0.29 -1.54 16 2 C -0.09 -1.05 2.59 -90.62 -0.23 -1.28 16 3 C -0.15 -1.57 9.18 37.16 0.34 -1.23 16 4 C -0.11 -1.47 4.08 -26.73 -0.11 -1.58 16 5 C 0.05 0.73 1.68 -67.60 -0.11 0.61 16 6 H 0.07 1.24 6.46 -51.93 -0.34 0.90 16 7 C 0.07 0.91 5.88 37.21 0.22 1.13 16 8 O -0.39 -5.95 10.83 -35.23 -0.38 -6.33 16 9 C 0.07 0.86 7.01 37.21 0.26 1.12 16 10 C 0.01 0.13 4.78 -3.71 -0.02 0.11 16 11 N -0.51 -7.48 1.74 -227.78 -0.40 -7.88 16 12 C 0.11 1.75 4.39 -4.98 -0.02 1.72 16 13 C -0.24 -4.94 4.03 -104.33 -0.42 -5.36 16 14 C -0.08 -1.77 7.72 -39.66 -0.31 -2.07 16 15 C -0.22 -5.41 9.80 -38.88 -0.38 -5.79 16 16 C 0.11 2.99 5.54 -106.82 -0.59 2.39 16 17 C -0.46 -12.35 9.06 -37.74 -0.34 -12.70 16 18 H 0.08 1.97 7.88 -52.49 -0.41 1.55 16 19 C 0.07 1.88 5.22 -17.34 -0.09 1.79 16 20 N -0.80 -20.74 10.93 55.55 0.61 -20.13 16 21 Si 0.91 18.80 29.58 -169.99 -5.03 13.77 16 22 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 25 C -0.16 -4.05 8.66 -38.87 -0.34 -4.39 16 26 C -0.09 -2.03 8.08 -39.66 -0.32 -2.35 16 27 H 0.05 0.62 6.34 -51.93 -0.33 0.29 16 28 H 0.03 0.34 8.13 -51.93 -0.42 -0.09 16 29 H 0.10 1.23 5.74 -51.93 -0.30 0.94 16 30 H 0.06 0.73 5.94 -51.93 -0.31 0.42 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.08 1.13 4.26 -51.93 -0.22 0.91 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 0.73 6.03 -51.93 -0.31 0.42 16 38 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 1.06 5.97 -51.93 -0.31 0.75 16 41 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.06 1.00 8.11 -51.93 -0.42 0.58 16 43 H 0.08 1.20 4.38 -51.93 -0.23 0.97 16 44 H 0.08 1.61 7.61 -52.48 -0.40 1.21 16 45 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 46 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 47 H 0.12 3.08 6.29 -52.49 -0.33 2.75 16 48 H 0.09 1.76 6.12 -52.49 -0.32 1.43 16 LS Contribution 350.58 15.07 5.28 5.28 Total: -1.00 -26.62 350.58 -9.68 -36.30 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -7.59 Total: 8.39 kcal Atomic # 6 Polarization: -27.23 SS G_CDS: -2.18 Total: -29.41 kcal Atomic # 7 Polarization: -28.22 SS G_CDS: 0.21 Total: -28.01 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.38 Total: -6.33 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -26.62 -9.68 -36.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343547514.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.516 kcal (2) G-P(sol) polarization free energy of solvation -26.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds