Wall clock time and date at job start Tue Mar 31 2020 09:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46919 * 2 1 4 4 C 1.53001 * 109.46940 * 119.99271 * 2 1 3 5 5 C 1.52997 * 109.47071 * 65.67689 * 4 2 1 6 6 H 1.09005 * 109.54217 * 174.08036 * 5 4 2 7 7 C 1.53098 * 109.50491 * 53.97294 * 5 4 2 8 8 O 1.43021 * 109.26062 * 183.21691 * 7 5 4 9 9 C 1.43010 * 113.73558 * 58.66540 * 8 7 5 10 10 C 1.53099 * 109.26361 * 301.33365 * 9 8 7 11 11 N 1.47011 * 109.50694 * 294.19015 * 5 4 2 12 12 C 1.46893 * 110.99984 * 302.32288 * 11 5 4 13 13 C 1.50693 * 109.47624 * 300.46394 * 12 11 5 14 14 C 1.38642 * 119.75039 * 275.51731 * 13 12 11 15 15 C 1.37609 * 120.24882 * 180.25844 * 14 13 12 16 16 C 1.40716 * 119.74639 * 359.46370 * 15 14 13 17 17 C 1.41400 * 120.24647 * 180.25877 * 16 15 14 18 18 H 1.08002 * 119.99988 * 28.80699 * 17 16 15 19 19 C 1.39944 * 119.99968 * 208.81328 * 17 16 15 20 20 N 1.30826 * 120.00188 * 12.35057 * 19 17 16 21 21 Si 1.86800 * 120.00000 * 192.35087 * 19 17 16 22 22 H 1.48505 * 109.46942 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47220 * 120.00002 * 21 19 17 24 24 H 1.48505 * 109.46941 * 240.00135 * 21 19 17 25 25 C 1.40715 * 119.51335 * 0.27980 * 16 15 14 26 26 C 1.37625 * 119.73963 * 359.97438 * 25 16 15 27 27 H 1.09000 * 109.47349 * 291.63781 * 1 2 3 28 28 H 1.08995 * 109.46739 * 51.64411 * 1 2 3 29 29 H 1.09002 * 109.46567 * 171.64043 * 1 2 3 30 30 H 1.08990 * 109.47530 * 239.99732 * 2 1 3 31 31 H 1.08997 * 109.47103 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46754 * 299.99862 * 3 2 1 33 33 H 1.09004 * 109.47493 * 59.99517 * 3 2 1 34 34 H 1.09000 * 109.47638 * 305.67760 * 4 2 1 35 35 H 1.09007 * 109.47133 * 185.67777 * 4 2 1 36 36 H 1.09001 * 109.50865 * 63.28434 * 7 5 4 37 37 H 1.09001 * 109.54480 * 303.17242 * 7 5 4 38 38 H 1.09003 * 109.50717 * 181.39671 * 9 8 7 39 39 H 1.08999 * 109.54269 * 61.29093 * 9 8 7 40 40 H 1.08994 * 109.50561 * 296.91468 * 10 9 8 41 41 H 1.09000 * 109.51145 * 176.78245 * 10 9 8 42 42 H 1.09006 * 109.47097 * 180.45796 * 12 11 5 43 43 H 1.09001 * 109.47007 * 60.46347 * 12 11 5 44 44 H 1.08004 * 119.87297 * 0.02562 * 14 13 12 45 45 H 1.07998 * 120.12770 * 179.74230 * 15 14 13 46 46 H 0.96996 * 119.99736 * 180.02562 * 20 19 17 47 47 H 1.07998 * 120.13325 * 180.02562 * 25 16 15 48 48 H 1.07999 * 119.87350 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.6498 -2.1989 1.1802 6 1 2.1012 -2.7346 2.0153 7 6 2.1455 -2.7973 -0.1389 8 8 1.7135 -4.1575 -0.2317 9 6 0.2937 -4.3162 -0.1678 10 6 -0.2209 -3.7331 1.1510 11 7 0.1867 -2.3241 1.2499 12 6 -0.3363 -1.7098 2.4775 13 6 0.2736 -2.3872 3.6775 14 6 -0.2883 -3.5563 4.1671 15 6 0.2571 -4.1805 5.2655 16 6 1.3961 -3.6340 5.8852 17 6 1.9685 -4.2696 7.0112 18 1 1.8772 -5.3390 7.1320 19 6 2.6530 -3.5131 7.9690 20 7 2.5618 -2.2080 7.9593 21 14 3.6972 -4.3666 9.2616 22 1 3.6343 -5.8362 9.0572 23 1 5.1049 -3.9095 9.1417 24 1 3.1817 -4.0329 10.6137 25 6 1.9611 -2.4499 5.3765 26 6 1.3957 -1.8398 4.2801 27 1 -0.3634 0.3789 0.9552 28 1 -0.3632 0.6377 -0.8058 29 1 -0.3632 -1.0168 -0.1494 30 1 1.8934 -0.5138 -0.8899 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9565 0.8899 34 1 1.5960 -0.2693 2.1364 35 1 3.1253 -0.6339 1.3017 36 1 3.2344 -2.7584 -0.1698 37 1 1.7372 -2.2279 -0.9739 38 1 0.0431 -5.3757 -0.2197 39 1 -0.1698 -3.7913 -1.0032 40 1 0.2006 -4.2934 1.9856 41 1 -1.3084 -3.8002 1.1790 42 1 -1.4200 -1.8237 2.5076 43 1 -0.0820 -0.6500 2.4903 44 1 -1.1595 -3.9766 3.6868 45 1 -0.1846 -5.0889 5.6477 46 1 3.0366 -1.6837 8.6229 47 1 2.8355 -2.0219 5.8441 48 1 1.8278 -0.9312 3.8876 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343547514.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:13 Heat of formation + Delta-G solvation = -40.114350 kcal Electronic energy + Delta-G solvation = -26358.358469 eV Core-core repulsion = 22991.069974 eV Total energy + Delta-G solvation = -3367.288495 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.39438 -39.29650 -37.68223 -36.33170 -35.10560 -32.40657 -32.12605 -31.11488 -29.67494 -27.83965 -27.64697 -26.72710 -24.60653 -23.89429 -22.72912 -22.02270 -21.58622 -19.68743 -19.23582 -17.56072 -17.15912 -17.12928 -16.52678 -16.28162 -15.99797 -15.66189 -15.56023 -15.36793 -15.09430 -14.56516 -14.36283 -14.13036 -13.84122 -13.56579 -13.45267 -13.25163 -13.01944 -12.84684 -12.81982 -12.76612 -12.50526 -12.44905 -12.28626 -12.19228 -11.95298 -11.62302 -11.47261 -11.44131 -11.35173 -11.25773 -11.08779 -10.98558 -10.30941 -9.36372 -9.21401 -9.01799 -8.61926 -6.38568 0.91990 1.11308 1.34169 1.45655 1.48847 2.18252 2.68828 2.95956 3.10032 3.70268 3.80515 4.00592 4.10958 4.14800 4.24079 4.32061 4.35246 4.36545 4.44844 4.50893 4.60350 4.64431 4.67919 4.76427 4.84047 4.88086 4.93006 4.98067 5.01697 5.04358 5.09065 5.13751 5.21444 5.25710 5.28299 5.33389 5.37843 5.44009 5.46987 5.67627 5.69356 5.92136 5.92445 6.04772 6.08504 6.13010 6.25164 6.31304 6.38047 6.68956 6.92580 7.01118 8.34261 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.017876 B = 0.004173 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.981678 B = 6707.890723 C = 7300.711832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.085 4.085 3 C -0.147 4.147 4 C -0.106 4.106 5 C 0.052 3.948 6 H 0.021 0.979 7 C 0.068 3.932 8 O -0.410 6.410 9 C 0.066 3.934 10 C 0.007 3.993 11 N -0.494 5.494 12 C 0.113 3.887 13 C -0.224 4.224 14 C -0.081 4.081 15 C -0.242 4.242 16 C 0.079 3.921 17 C -0.506 4.506 18 H 0.069 0.931 19 C 0.034 3.966 20 N -0.834 5.834 21 Si 0.981 3.019 22 H -0.260 1.260 23 H -0.264 1.264 24 H -0.265 1.265 25 C -0.184 4.184 26 C -0.091 4.091 27 H 0.039 0.961 28 H 0.042 0.958 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.045 0.955 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.072 0.928 40 H 0.026 0.974 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.113 0.887 45 H 0.090 0.910 46 H 0.286 0.714 47 H 0.094 0.906 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.746 3.729 -15.532 16.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 C -0.204 4.204 4 C -0.144 4.144 5 C -0.057 4.057 6 H 0.039 0.961 7 C -0.008 4.008 8 O -0.329 6.329 9 C -0.010 4.010 10 C -0.122 4.122 11 N -0.217 5.217 12 C -0.014 4.014 13 C -0.227 4.227 14 C -0.099 4.099 15 C -0.262 4.262 16 C 0.077 3.923 17 C -0.536 4.536 18 H 0.087 0.913 19 C -0.179 4.179 20 N -0.461 5.461 21 Si 0.802 3.198 22 H -0.184 1.184 23 H -0.189 1.189 24 H -0.189 1.189 25 C -0.204 4.204 26 C -0.109 4.109 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.113 0.887 37 H 0.097 0.903 38 H 0.123 0.877 39 H 0.091 0.909 40 H 0.044 0.956 41 H 0.115 0.885 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.131 0.869 45 H 0.109 0.891 46 H 0.096 0.904 47 H 0.112 0.888 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.762 4.039 -15.854 16.592 hybrid contribution 0.768 -0.613 2.150 2.364 sum -1.994 3.427 -13.704 14.266 Atomic orbital electron populations 1.22145 0.94467 1.03920 1.00064 1.21054 0.96951 0.95374 0.96914 1.21862 1.00769 0.96129 1.01631 1.21706 1.00348 0.93011 0.99305 1.22166 0.88973 0.97217 0.97348 0.96110 1.22896 0.99868 0.81949 0.96103 1.87938 1.23471 1.27267 1.94210 1.22770 0.80337 1.01841 0.96079 1.22929 1.01718 0.89587 0.97949 1.63072 1.09716 1.14422 1.34528 1.21034 0.98410 0.97994 0.83999 1.20126 1.00660 0.99382 1.02523 1.20682 0.98632 0.95361 0.95244 1.21212 0.99471 1.03439 1.02048 1.17955 0.90271 0.92289 0.91768 1.19833 1.32484 0.95360 1.05950 0.91250 1.26696 0.95663 0.95247 1.00334 1.69865 1.35261 1.07429 1.33559 0.85176 0.78084 0.79353 0.77184 1.18404 1.18857 1.18936 1.21263 1.01759 0.99539 0.97840 1.20813 0.96332 0.98413 0.95377 0.94208 0.93868 0.89219 0.90699 0.92825 0.91955 0.93568 0.92172 0.91846 0.88682 0.90290 0.87722 0.90934 0.95593 0.88493 0.90230 0.89836 0.86869 0.89143 0.90369 0.88762 0.87840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 7.73 71.98 0.56 -2.52 16 2 C -0.08 -1.72 2.59 -10.79 -0.03 -1.75 16 3 C -0.15 -2.71 9.18 71.98 0.66 -2.05 16 4 C -0.11 -2.69 4.08 30.59 0.12 -2.56 16 5 C 0.05 1.49 1.68 44.93 0.08 1.57 16 6 H 0.02 0.80 6.46 -2.38 -0.02 0.78 16 7 C 0.07 1.73 5.88 72.01 0.42 2.15 16 8 O -0.41 -11.84 10.83 -148.98 -1.61 -13.45 16 9 C 0.07 1.56 7.01 72.02 0.50 2.06 16 10 C 0.01 0.18 4.78 86.31 0.41 0.59 16 11 N -0.49 -13.32 1.74 -874.57 -1.52 -14.84 16 12 C 0.11 3.43 4.39 85.56 0.38 3.81 16 13 C -0.22 -8.99 4.03 -19.68 -0.08 -9.07 16 14 C -0.08 -3.43 7.72 22.22 0.17 -3.26 16 15 C -0.24 -12.12 9.80 22.73 0.22 -11.90 16 16 C 0.08 4.41 5.54 -21.29 -0.12 4.29 16 17 C -0.51 -28.39 9.06 23.46 0.21 -28.18 16 18 H 0.07 3.80 7.88 -2.91 -0.02 3.78 16 19 C 0.03 1.77 5.22 85.26 0.45 2.22 16 20 N -0.83 -45.03 10.93 21.83 0.24 -44.80 16 21 Si 0.98 39.67 29.58 68.60 2.03 41.70 16 22 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 23 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 24 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 25 C -0.18 -9.86 8.66 22.73 0.20 -9.67 16 26 C -0.09 -4.09 8.08 22.22 0.18 -3.91 16 27 H 0.04 0.89 6.34 -2.39 -0.02 0.88 16 28 H 0.04 0.79 8.13 -2.39 -0.02 0.77 16 29 H 0.09 1.98 5.74 -2.39 -0.01 1.96 16 30 H 0.07 1.41 5.94 -2.39 -0.01 1.40 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.06 1.72 4.26 -2.39 -0.01 1.71 16 35 H 0.06 1.57 8.14 -2.38 -0.02 1.56 16 36 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.08 1.69 6.03 -2.39 -0.01 1.68 16 38 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 40 H 0.03 0.89 5.97 -2.39 -0.01 0.87 16 41 H 0.10 2.22 8.14 -2.39 -0.02 2.21 16 42 H 0.08 2.24 8.11 -2.38 -0.02 2.22 16 43 H 0.08 2.48 4.38 -2.39 -0.01 2.47 16 44 H 0.11 4.12 7.61 -2.91 -0.02 4.10 16 45 H 0.09 4.37 8.06 -2.91 -0.02 4.35 16 46 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 47 H 0.09 5.36 6.29 -2.91 -0.02 5.34 16 48 H 0.10 4.24 6.12 -2.91 -0.02 4.22 16 Total: -1.00 -60.63 350.58 4.41 -56.21 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: 0.95 Total: 33.36 kcal Atomic # 6 Polarization: -62.52 SS G_CDS: 4.34 Total: -58.18 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: -1.29 Total: -59.64 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: -1.61 Total: -13.45 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.70 kcal Total: -60.63 4.41 -56.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343547514.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.099 kcal (2) G-P(sol) polarization free energy of solvation -60.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds