Wall clock time and date at job start Tue Mar 31 2020 07:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 110.01051 * 2 1 4 4 C 1.53006 * 109.47048 * 58.88872 * 3 2 1 5 5 C 1.52993 * 109.47074 * 179.97438 * 4 3 2 6 6 O 1.42900 * 109.47060 * 179.97438 * 5 4 3 7 7 C 1.54322 * 109.88947 * 121.11845 * 2 1 3 8 8 C 1.55138 * 103.01712 * 97.11991 * 7 2 1 9 9 C 1.54909 * 101.65518 * 35.65536 * 8 7 2 10 10 N 1.47445 * 109.88866 * 238.88783 * 2 1 3 11 11 C 1.46892 * 111.00090 * 117.33622 * 10 2 1 12 12 C 1.50703 * 109.47119 * 170.00403 * 11 10 2 13 13 C 1.38629 * 119.75127 * 90.00162 * 12 11 10 14 14 C 1.37624 * 120.24653 * 180.27643 * 13 12 11 15 15 C 1.40716 * 119.74224 * 359.52057 * 14 13 12 16 16 C 1.41396 * 120.23809 * 180.23246 * 15 14 13 17 17 H 1.08004 * 119.99614 * 155.44655 * 16 15 14 18 18 C 1.39940 * 120.00247 * 335.43838 * 16 15 14 19 19 N 1.30823 * 120.00151 * 342.11422 * 18 16 15 20 20 Si 1.86806 * 119.99767 * 162.10433 * 18 16 15 21 21 H 1.48496 * 109.46866 * 94.67188 * 20 18 16 22 22 H 1.48498 * 109.46883 * 214.66477 * 20 18 16 23 23 H 1.48493 * 109.47470 * 334.66957 * 20 18 16 24 24 C 1.40712 * 119.51327 * 0.46996 * 15 14 13 25 25 C 1.37612 * 119.74657 * 359.76314 * 24 15 14 26 26 H 1.08995 * 109.47327 * 181.11450 * 1 2 3 27 27 H 1.09003 * 109.46901 * 301.11172 * 1 2 3 28 28 H 1.08998 * 109.47094 * 61.10746 * 1 2 3 29 29 H 1.09005 * 109.46998 * 178.88085 * 3 2 1 30 30 H 1.08991 * 109.47542 * 298.88831 * 3 2 1 31 31 H 1.08997 * 109.46646 * 300.00118 * 4 3 2 32 32 H 1.09004 * 109.46666 * 59.99675 * 4 3 2 33 33 H 1.08996 * 109.47568 * 300.00298 * 5 4 3 34 34 H 1.09007 * 109.46829 * 60.00223 * 5 4 3 35 35 H 0.96701 * 114.00381 * 180.02562 * 6 5 4 36 36 H 1.08997 * 110.70425 * 215.50412 * 7 2 1 37 37 H 1.09000 * 110.70610 * 338.56671 * 7 2 1 38 38 H 1.09000 * 110.99107 * 153.74764 * 8 7 2 39 39 H 1.08999 * 110.99452 * 277.52254 * 8 7 2 40 40 H 1.08999 * 110.37258 * 204.09952 * 9 8 7 41 41 H 1.09002 * 110.37143 * 81.75743 * 9 8 7 42 42 H 1.09000 * 109.47154 * 50.00049 * 11 10 2 43 43 H 1.09000 * 109.47392 * 289.99994 * 11 10 2 44 44 H 1.07999 * 119.87639 * 359.97438 * 13 12 11 45 45 H 1.07997 * 120.12681 * 179.71511 * 14 13 12 46 46 H 0.97002 * 120.00064 * 180.02562 * 19 18 16 47 47 H 1.08001 * 120.12762 * 179.73183 * 24 15 14 48 48 H 1.08003 * 119.88187 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0536 1.4376 0.0000 4 6 1.5277 2.1719 1.2351 5 6 2.0518 3.6093 1.2354 6 8 1.5601 4.2952 2.3886 7 6 2.0550 -0.7500 1.2423 8 6 2.3501 -2.1709 0.6939 9 6 2.8585 -1.8555 -0.7349 10 7 2.0316 -0.7164 -1.1871 11 6 2.8029 0.1814 -2.0569 12 6 3.5005 -0.6266 -3.1207 13 6 2.8629 -0.8722 -4.3269 14 6 3.4882 -1.6136 -5.3032 15 6 4.7837 -2.1144 -5.0772 16 6 5.4379 -2.8732 -6.0750 17 1 6.5167 -2.9216 -6.0961 18 6 4.6877 -3.5617 -7.0349 19 7 3.4188 -3.8011 -6.8251 20 14 5.4981 -4.1385 -8.6161 21 1 5.9433 -5.5465 -8.4590 22 1 4.5235 -4.0494 -9.7329 23 1 6.6716 -3.2785 -8.9132 24 6 5.4213 -1.8587 -3.8492 25 6 4.7750 -1.1189 -2.8854 26 1 -0.3634 -1.0274 0.0200 27 1 -0.3633 0.5310 0.8799 28 1 -0.3633 0.4965 -0.8997 29 1 3.1434 1.4274 0.0201 30 1 1.7115 1.9489 -0.8997 31 1 0.4380 2.1820 1.2151 32 1 1.8699 1.6605 2.1348 33 1 3.1415 3.5988 1.2555 34 1 1.7099 4.1208 0.3356 35 1 1.8529 5.2146 2.4540 36 1 2.9666 -0.2844 1.6168 37 1 1.2937 -0.7852 2.0216 38 1 3.1229 -2.6642 1.2834 39 1 1.4423 -2.7734 0.6619 40 1 2.7105 -2.7150 -1.3887 41 1 3.9112 -1.5738 -0.7095 42 1 3.5437 0.7158 -1.4621 43 1 2.1298 0.8978 -2.5279 44 1 1.8697 -0.4844 -4.4992 45 1 2.9879 -1.8077 -6.2404 46 1 2.8989 -4.2787 -7.4904 47 1 6.4138 -2.2419 -3.6635 48 1 5.2622 -0.9217 -1.9418 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343730578.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:13 Heat of formation + Delta-G solvation = -55.903474 kcal Electronic energy + Delta-G solvation = -25183.655952 eV Core-core repulsion = 21815.682789 eV Total energy + Delta-G solvation = -3367.973163 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.18804 -39.24662 -37.90392 -35.87538 -34.77557 -33.67060 -31.35024 -31.30689 -30.76578 -28.01012 -27.39856 -25.80325 -24.88052 -23.00298 -22.89913 -22.02612 -21.24900 -19.36409 -19.20224 -18.07839 -17.18217 -16.95353 -16.69821 -16.47458 -16.02339 -15.77393 -15.48915 -15.14090 -14.73129 -14.56824 -14.28840 -14.01340 -13.75697 -13.70081 -13.49510 -13.32830 -13.11003 -12.82707 -12.68592 -12.65862 -12.51479 -12.28461 -12.17096 -12.04048 -11.96104 -11.92059 -11.59372 -11.45904 -11.27310 -11.26535 -11.18669 -10.97200 -10.82954 -9.34561 -9.22671 -8.97621 -8.62572 -6.31968 0.96332 1.16324 1.36857 1.47784 1.53351 2.20359 2.68810 3.11725 3.37875 3.68988 3.79970 3.85902 3.96157 4.08373 4.20762 4.30831 4.35089 4.35554 4.43811 4.52102 4.55673 4.58105 4.62830 4.71469 4.75824 4.79475 4.85502 4.94756 4.97501 5.05758 5.07866 5.11173 5.14362 5.16318 5.23308 5.23622 5.33860 5.38409 5.39666 5.48305 5.58855 5.72527 5.95509 6.11446 6.20755 6.32195 6.39823 6.41861 6.72640 6.90185 6.95711 7.06009 8.34113 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.026108 B = 0.002978 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.203280 B = 9399.541625 C = 9716.542250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.095 3.905 3 C -0.120 4.120 4 C -0.113 4.113 5 C 0.074 3.926 6 O -0.595 6.595 7 C -0.124 4.124 8 C -0.126 4.126 9 C 0.051 3.949 10 N -0.529 5.529 11 C 0.119 3.881 12 C -0.197 4.197 13 C -0.088 4.088 14 C -0.190 4.190 15 C 0.080 3.920 16 C -0.503 4.503 17 H 0.073 0.927 18 C 0.034 3.966 19 N -0.826 5.826 20 Si 0.980 3.020 21 H -0.262 1.262 22 H -0.266 1.266 23 H -0.259 1.259 24 C -0.242 4.242 25 C -0.080 4.080 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.396 0.604 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.043 0.957 41 H 0.044 0.956 42 H 0.048 0.952 43 H 0.070 0.930 44 H 0.098 0.902 45 H 0.096 0.904 46 H 0.287 0.713 47 H 0.093 0.907 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.908 10.291 14.638 18.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.006 3.994 3 C -0.159 4.159 4 C -0.151 4.151 5 C -0.004 4.004 6 O -0.404 6.404 7 C -0.162 4.162 8 C -0.164 4.164 9 C -0.077 4.077 10 N -0.253 5.253 11 C -0.008 4.008 12 C -0.199 4.199 13 C -0.107 4.107 14 C -0.210 4.210 15 C 0.078 3.922 16 C -0.533 4.533 17 H 0.091 0.909 18 C -0.180 4.180 19 N -0.452 5.452 20 Si 0.801 3.199 21 H -0.187 1.187 22 H -0.190 1.190 23 H -0.183 1.183 24 C -0.262 4.262 25 C -0.098 4.098 26 H 0.068 0.932 27 H 0.093 0.907 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.246 0.754 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.088 0.912 44 H 0.117 0.883 45 H 0.114 0.886 46 H 0.097 0.903 47 H 0.111 0.889 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.821 9.423 14.350 17.831 hybrid contribution 1.281 0.138 -0.889 1.565 sum -3.540 9.560 13.461 16.885 Atomic orbital electron populations 1.21774 0.93311 1.01556 1.01562 1.21821 0.96195 0.92285 0.89058 1.21980 1.00476 0.94956 0.98462 1.21512 1.01655 0.93853 0.98052 1.22224 0.97564 0.93027 0.87593 1.86412 1.76937 1.30701 1.46334 1.22856 1.01609 0.94617 0.97097 1.22698 1.01533 0.97572 0.94618 1.22873 0.95681 0.93672 0.95477 1.63735 1.36377 1.08853 1.16321 1.20928 0.94710 0.93136 0.91997 1.19364 0.95710 1.08390 0.96394 1.20713 0.97778 0.98100 0.94072 1.21244 0.97655 1.02520 0.99575 1.17934 0.92484 0.89985 0.91824 1.19818 0.94635 1.27469 1.11358 0.90871 1.26754 0.95116 0.93939 1.02207 1.69897 1.09536 1.30722 1.35088 0.85225 0.79097 0.79075 0.76496 1.18723 1.19043 1.18269 1.21123 1.01099 1.08849 0.95116 1.20620 0.94622 0.97397 0.97175 0.93245 0.90739 0.93395 0.91725 0.91356 0.90976 0.91240 0.93166 0.93083 0.75410 0.90989 0.89396 0.89953 0.91120 0.93828 0.93823 0.93395 0.91153 0.88340 0.88577 0.90265 0.88854 0.87230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.75 8.36 71.98 0.60 -2.15 16 2 C 0.10 2.24 0.90 3.87 0.00 2.24 16 3 C -0.12 -2.47 2.85 30.60 0.09 -2.38 16 4 C -0.11 -1.98 5.01 30.59 0.15 -1.83 16 5 C 0.07 1.17 7.05 71.98 0.51 1.68 16 6 O -0.60 -9.91 13.66 -148.98 -2.03 -11.95 16 7 C -0.12 -2.55 4.96 31.78 0.16 -2.39 16 8 C -0.13 -3.04 7.08 31.98 0.23 -2.82 16 9 C 0.05 1.63 5.35 86.77 0.46 2.09 16 10 N -0.53 -16.48 4.93 -841.00 -4.15 -20.63 16 11 C 0.12 3.93 4.09 85.56 0.35 4.28 16 12 C -0.20 -8.30 4.66 -19.67 -0.09 -8.39 16 13 C -0.09 -4.18 9.67 22.22 0.21 -3.96 16 14 C -0.19 -10.34 8.70 22.73 0.20 -10.14 16 15 C 0.08 4.44 5.57 -21.29 -0.12 4.32 16 16 C -0.50 -27.95 9.05 23.46 0.21 -27.74 16 17 H 0.07 3.92 7.91 -2.91 -0.02 3.90 16 18 C 0.03 1.79 5.14 85.26 0.44 2.22 16 19 N -0.83 -44.68 10.97 21.82 0.24 -44.44 16 20 Si 0.98 39.18 29.60 68.60 2.03 41.21 16 21 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 22 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 23 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 24 C -0.24 -12.09 9.80 22.73 0.22 -11.87 16 25 C -0.08 -3.45 8.15 22.22 0.18 -3.27 16 26 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.07 1.33 6.40 -2.39 -0.02 1.32 16 28 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 1.37 6.56 -2.38 -0.02 1.35 16 30 H 0.07 1.47 6.87 -2.39 -0.02 1.45 16 31 H 0.07 1.29 6.43 -2.39 -0.02 1.28 16 32 H 0.07 1.23 7.20 -2.39 -0.02 1.21 16 33 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 35 H 0.40 2.95 9.12 -74.06 -0.68 2.27 16 36 H 0.07 1.40 7.69 -2.39 -0.02 1.38 16 37 H 0.09 1.53 7.83 -2.39 -0.02 1.51 16 38 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.04 1.43 5.68 -2.39 -0.01 1.42 16 42 H 0.05 1.44 5.79 -2.39 -0.01 1.42 16 43 H 0.07 2.25 7.27 -2.39 -0.02 2.23 16 44 H 0.10 4.35 8.06 -2.91 -0.02 4.32 16 45 H 0.10 5.51 6.17 -2.91 -0.02 5.49 16 46 H 0.29 14.02 8.30 -92.71 -0.77 13.25 16 47 H 0.09 4.44 8.06 -2.91 -0.02 4.42 16 48 H 0.11 4.09 7.09 -2.91 -0.02 4.07 16 Total: -1.00 -63.16 366.25 0.16 -62.99 By element: Atomic # 1 Polarization: 32.64 SS G_CDS: 0.27 Total: 32.91 kcal Atomic # 6 Polarization: -63.91 SS G_CDS: 3.81 Total: -60.11 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: -3.91 Total: -65.07 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: -2.03 Total: -11.95 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 2.03 Total: 41.21 kcal Total: -63.16 0.16 -62.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343730578.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.091 kcal (2) G-P(sol) polarization free energy of solvation -63.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds