Wall clock time and date at job start Tue Mar 31 2020 08:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46754 * 2 1 4 4 C 1.52997 * 109.47003 * 183.70176 * 3 2 1 5 5 C 1.53006 * 110.27133 * 302.38373 * 4 3 2 6 6 O 1.42892 * 109.47250 * 298.41344 * 5 4 3 7 7 C 1.54597 * 110.30937 * 180.19511 * 4 3 2 8 8 C 1.54935 * 102.91925 * 263.03790 * 7 4 3 9 9 N 1.48532 * 103.22915 * 322.58501 * 8 7 4 10 10 C 1.46900 * 111.00443 * 159.72150 * 9 8 7 11 11 C 1.50706 * 109.46730 * 52.60253 * 10 9 8 12 12 C 1.38632 * 119.74928 * 90.00347 * 11 10 9 13 13 C 1.37611 * 120.24867 * 180.02562 * 12 11 10 14 14 C 1.40718 * 119.74804 * 359.97438 * 13 12 11 15 15 C 1.41392 * 120.24795 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99714 * 330.86497 * 15 14 13 17 17 C 1.39942 * 120.00121 * 150.86853 * 15 14 13 18 18 N 1.30822 * 120.00265 * 349.01787 * 17 15 14 19 19 Si 1.86808 * 119.99899 * 169.01057 * 17 15 14 20 20 H 1.48493 * 109.46925 * 180.02562 * 19 17 15 21 21 H 1.48499 * 109.46970 * 300.00367 * 19 17 15 22 22 H 1.48496 * 109.46830 * 60.00504 * 19 17 15 23 23 C 1.40722 * 119.50525 * 0.27812 * 14 13 12 24 24 C 1.37612 * 119.74723 * 359.48656 * 23 14 13 25 25 C 1.47904 * 105.81878 * 39.20508 * 9 8 7 26 26 H 1.09007 * 109.46558 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47352 * 300.00120 * 1 2 3 28 28 H 1.08997 * 109.47215 * 60.00535 * 1 2 3 29 29 H 1.08995 * 109.47352 * 239.99880 * 2 1 3 30 30 H 1.08997 * 109.47215 * 119.99465 * 2 1 3 31 31 H 1.08997 * 109.47282 * 63.69599 * 3 2 1 32 32 H 1.09006 * 109.46873 * 303.69501 * 3 2 1 33 33 H 1.09002 * 109.47098 * 58.41465 * 5 4 3 34 34 H 1.09000 * 109.47092 * 178.41032 * 5 4 3 35 35 H 0.96700 * 114.00226 * 180.02562 * 6 5 4 36 36 H 1.09003 * 110.72140 * 21.39435 * 7 4 3 37 37 H 1.08999 * 110.72854 * 144.67889 * 7 4 3 38 38 H 1.09002 * 110.66695 * 204.15059 * 8 7 4 39 39 H 1.08998 * 110.67035 * 81.02098 * 8 7 4 40 40 H 1.09003 * 109.46709 * 292.60450 * 10 9 8 41 41 H 1.08998 * 109.47322 * 172.60184 * 10 9 8 42 42 H 1.07998 * 119.87346 * 0.02562 * 12 11 10 43 43 H 1.08004 * 120.12944 * 180.02562 * 13 12 11 44 44 H 0.96997 * 120.00419 * 180.02562 * 18 17 15 45 45 H 1.08007 * 120.12249 * 179.72411 * 23 14 13 46 46 H 1.07995 * 119.87634 * 180.22909 * 24 23 14 47 47 H 1.08995 * 109.91508 * 94.02866 * 25 9 8 48 48 H 1.08998 * 109.91748 * 215.12030 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5671 1.4437 -0.0931 5 6 4.1695 0.6494 1.0676 6 8 3.8074 1.2655 2.3050 7 6 4.1039 2.8934 -0.0897 8 6 4.3042 3.1922 -1.5967 9 7 4.7956 1.8990 -2.1372 10 6 4.5929 1.8246 -3.5903 11 6 5.1910 3.0436 -4.2440 12 6 6.5135 3.0225 -4.6592 13 6 7.0703 4.1300 -5.2568 14 6 6.2917 5.2867 -5.4462 15 6 6.8529 6.4305 -6.0595 16 1 7.9101 6.6298 -5.9651 17 6 6.0384 7.3041 -6.7887 18 7 4.8118 6.9601 -7.0862 19 14 6.7027 8.9617 -7.3371 20 1 5.6502 9.6932 -8.0869 21 1 7.1022 9.7535 -6.1460 22 1 7.8835 8.7562 -8.2138 23 6 4.9520 5.2986 -5.0158 24 6 4.4147 4.1779 -4.4250 25 6 4.0210 0.8499 -1.4395 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 1.7317 1.9369 0.9212 32 1 1.6235 1.9751 -0.8551 33 1 3.7891 -0.3718 1.0452 34 1 5.2553 0.6348 0.9730 35 1 4.1562 0.8143 3.0859 36 1 3.3721 3.5746 0.3447 37 1 5.0521 2.9525 0.4446 38 1 5.0485 3.9759 -1.7379 39 1 3.3588 3.4697 -2.0629 40 1 3.5253 1.7832 -3.8064 41 1 5.0774 0.9290 -3.9793 42 1 7.1090 2.1334 -4.5132 43 1 8.1007 4.1112 -5.5800 44 1 4.2473 7.5655 -7.5919 45 1 4.3467 6.1826 -5.1522 46 1 3.3857 4.1834 -4.0973 47 1 3.1513 0.5726 -2.0351 48 1 4.6490 -0.0247 -1.2702 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344240646.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:23 Heat of formation + Delta-G solvation = -47.294371 kcal Electronic energy + Delta-G solvation = -25039.921237 eV Core-core repulsion = 21672.321393 eV Total energy + Delta-G solvation = -3367.599844 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.88009 -37.73743 -36.44789 -34.95243 -33.70405 -32.13535 -29.84910 -29.50281 -29.06060 -26.79208 -26.22561 -24.51929 -23.48245 -21.78562 -21.25258 -20.52822 -19.67008 -18.74889 -17.36570 -17.24907 -15.79958 -15.66608 -15.30116 -15.20254 -14.60162 -14.19222 -14.04970 -13.85357 -13.46605 -13.38053 -12.91022 -12.79761 -12.55019 -12.48385 -12.00138 -11.93430 -11.66781 -11.62526 -11.52573 -11.50155 -11.22345 -11.04710 -10.94587 -10.80250 -10.57087 -10.43194 -10.39159 -10.32174 -10.23234 -9.88369 -9.53439 -9.32177 -9.15700 -8.00724 -7.41744 -7.20786 -6.68306 -4.34316 2.76970 3.07856 3.10188 3.11429 3.19750 3.96342 4.04913 4.39407 4.64490 4.68504 4.70778 4.86174 4.98828 5.11968 5.21129 5.32635 5.37940 5.50558 5.56839 5.59218 5.67926 5.73492 5.75395 5.78252 5.81544 5.90564 5.96690 6.01618 6.06833 6.17804 6.23865 6.29293 6.34670 6.39343 6.39900 6.47420 6.52200 6.95686 7.12021 7.23873 7.35088 7.40025 7.48868 7.50108 7.65173 7.89775 8.08602 8.14689 8.33634 8.67074 8.93255 9.00026 10.26285 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.024439 B = 0.002891 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.441817 B = 9681.339779 C = 9813.831669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.102 4.102 4 C -0.066 4.066 5 C 0.091 3.909 6 O -0.569 6.569 7 C -0.107 4.107 8 C 0.045 3.955 9 N -0.510 5.510 10 C 0.111 3.889 11 C -0.207 4.207 12 C -0.073 4.073 13 C -0.224 4.224 14 C 0.112 3.888 15 C -0.465 4.465 16 H 0.075 0.925 17 C 0.074 3.926 18 N -0.804 5.804 19 Si 0.910 3.090 20 H -0.279 1.279 21 H -0.265 1.265 22 H -0.266 1.266 23 C -0.157 4.157 24 C -0.095 4.095 25 C 0.043 3.957 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.044 0.956 34 H 0.048 0.952 35 H 0.374 0.626 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.042 0.958 40 H 0.025 0.975 41 H 0.065 0.935 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.279 0.721 45 H 0.117 0.883 46 H 0.082 0.918 47 H 0.047 0.953 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.526 -11.117 13.511 18.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.139 4.139 4 C -0.066 4.066 5 C 0.013 3.987 6 O -0.373 6.373 7 C -0.145 4.145 8 C -0.083 4.083 9 N -0.234 5.234 10 C -0.016 4.016 11 C -0.208 4.208 12 C -0.092 4.092 13 C -0.243 4.243 14 C 0.110 3.890 15 C -0.496 4.496 16 H 0.093 0.907 17 C -0.142 4.142 18 N -0.430 5.430 19 Si 0.734 3.266 20 H -0.204 1.204 21 H -0.189 1.189 22 H -0.191 1.191 23 C -0.177 4.177 24 C -0.114 4.114 25 C -0.085 4.085 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.220 0.780 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.060 0.940 40 H 0.043 0.957 41 H 0.083 0.917 42 H 0.106 0.894 43 H 0.109 0.891 44 H 0.090 0.910 45 H 0.135 0.865 46 H 0.100 0.900 47 H 0.065 0.935 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.489 -10.691 13.031 17.727 hybrid contribution -0.343 0.385 -0.282 0.588 sum -5.831 -10.306 12.750 17.400 Atomic orbital electron populations 1.21764 0.96065 1.01283 1.01775 1.21613 0.95681 0.97271 1.01778 1.21619 0.93449 0.96657 1.02207 1.21420 0.95462 0.96400 0.93338 1.22274 0.97907 0.94816 0.83724 1.86491 1.78336 1.56913 1.15602 1.22518 1.01016 0.94307 0.96616 1.23158 0.99159 0.93151 0.92789 1.64950 1.51520 1.02169 1.04772 1.20913 0.97092 0.97361 0.86237 1.18881 0.95324 0.95605 1.11005 1.20334 0.93877 0.96862 0.98089 1.21028 0.99581 0.94169 1.09570 1.17628 0.91767 0.91376 0.88220 1.19543 0.95874 1.05799 1.28343 0.90657 1.25873 0.94461 0.99368 0.94527 1.69784 1.07556 1.35803 1.29841 0.86348 0.79341 0.81508 0.79361 1.20415 1.18932 1.19091 1.21298 0.97028 0.97737 1.01620 1.20535 0.96941 0.93911 1.00051 1.22931 0.96351 0.96039 0.93160 0.93031 0.92849 0.92808 0.92063 0.92030 0.91189 0.92172 0.93749 0.93373 0.77987 0.91324 0.90983 0.89574 0.94003 0.95687 0.91676 0.89438 0.89088 0.91003 0.86532 0.89989 0.93512 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.95 16 2 C -0.13 -1.20 5.27 -26.73 -0.14 -1.34 16 3 C -0.10 -1.13 3.84 -26.73 -0.10 -1.23 16 4 C -0.07 -0.78 0.50 -153.15 -0.08 -0.86 16 5 C 0.09 0.92 5.23 37.16 0.19 1.11 16 6 O -0.57 -5.64 12.85 -35.23 -0.45 -6.09 16 7 C -0.11 -1.47 5.87 -24.87 -0.15 -1.61 16 8 C 0.05 0.74 4.96 -1.90 -0.01 0.73 16 9 N -0.51 -8.33 5.39 -231.89 -1.25 -9.58 16 10 C 0.11 1.98 5.18 -4.97 -0.03 1.96 16 11 C -0.21 -4.46 4.62 -104.33 -0.48 -4.94 16 12 C -0.07 -1.64 9.67 -39.66 -0.38 -2.03 16 13 C -0.22 -5.55 9.80 -38.87 -0.38 -5.93 16 14 C 0.11 3.02 5.54 -106.82 -0.59 2.42 16 15 C -0.47 -12.48 9.06 -37.74 -0.34 -12.82 16 16 H 0.08 1.94 7.87 -52.49 -0.41 1.53 16 17 C 0.07 1.88 5.25 -17.34 -0.09 1.79 16 18 N -0.80 -21.05 10.90 55.55 0.61 -20.44 16 19 Si 0.91 18.97 29.57 -169.99 -5.03 13.94 16 20 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 22 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 23 C -0.16 -4.08 8.65 -38.87 -0.34 -4.42 16 24 C -0.10 -2.20 8.30 -39.66 -0.33 -2.53 16 25 C 0.04 0.57 5.44 -2.76 -0.01 0.55 16 26 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.59 6.71 -51.93 -0.35 0.24 16 30 H 0.06 0.56 6.63 -51.93 -0.34 0.21 16 31 H 0.07 0.82 7.85 -51.93 -0.41 0.41 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.04 0.39 6.46 -51.93 -0.34 0.05 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.37 2.04 9.12 45.56 0.42 2.46 16 36 H 0.07 0.92 7.85 -51.93 -0.41 0.51 16 37 H 0.07 1.02 7.87 -51.93 -0.41 0.61 16 38 H 0.09 1.62 7.73 -51.93 -0.40 1.21 16 39 H 0.04 0.71 7.07 -51.93 -0.37 0.34 16 40 H 0.02 0.44 7.75 -51.93 -0.40 0.04 16 41 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 42 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 43 H 0.09 2.14 8.06 -52.48 -0.42 1.72 16 44 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 45 H 0.12 3.15 6.28 -52.48 -0.33 2.82 16 46 H 0.08 1.75 7.37 -52.49 -0.39 1.36 16 47 H 0.05 0.61 6.14 -51.93 -0.32 0.29 16 48 H 0.07 0.87 7.69 -51.93 -0.40 0.47 16 LS Contribution 370.71 15.07 5.59 5.59 Total: -1.00 -28.17 370.71 -10.80 -38.97 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -7.37 Total: 7.71 kcal Atomic # 6 Polarization: -27.21 SS G_CDS: -2.89 Total: -30.10 kcal Atomic # 7 Polarization: -29.38 SS G_CDS: -0.64 Total: -30.02 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: -0.45 Total: -6.09 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.17 -10.80 -38.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344240646.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.324 kcal (2) G-P(sol) polarization free energy of solvation -28.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds