Wall clock time and date at job start Tue Mar 31 2020 08:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 C 1.38288 * 119.94978 * 299.73218 * 4 2 1 6 6 C 1.38182 * 120.20641 * 180.09351 * 5 4 2 7 7 C 1.38866 * 119.64899 * 0.51910 * 6 5 4 8 8 C 1.37931 * 119.92332 * 359.00477 * 7 6 5 9 9 C 1.38066 * 120.45963 * 1.13309 * 8 7 6 10 10 C 1.51605 * 119.58788 * 182.13794 * 8 7 6 11 11 H 1.09004 * 109.59715 * 171.13612 * 10 8 7 12 12 N 1.46900 * 109.59876 * 50.66029 * 10 8 7 13 13 C 1.46900 * 111.00172 * 84.99741 * 12 10 8 14 14 C 1.52999 * 109.46985 * 179.97438 * 13 12 10 15 15 C 1.50704 * 109.46938 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99881 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99783 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00391 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99900 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47147 * 60.00169 * 19 17 15 21 21 H 1.48493 * 109.47343 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47270 * 300.00601 * 19 17 15 23 23 C 1.52899 * 108.69193 * 290.89600 * 10 8 7 24 24 C 1.52150 * 110.75630 * 83.16640 * 23 10 8 25 25 C 1.51417 * 113.45592 * 292.60616 * 24 23 10 26 26 O 1.36218 * 119.85525 * 177.87929 * 7 6 5 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 31 31 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 32 32 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 34 34 H 1.07997 * 119.89741 * 0.33858 * 5 4 2 35 35 H 1.07993 * 120.17263 * 180.25599 * 6 5 4 36 36 H 1.08001 * 120.17535 * 179.20131 * 9 8 7 37 37 H 1.00899 * 110.99877 * 321.03863 * 12 10 8 38 38 H 1.08998 * 109.47129 * 299.99753 * 13 12 10 39 39 H 1.09001 * 109.47069 * 59.99836 * 13 12 10 40 40 H 1.08998 * 109.47412 * 300.00103 * 14 13 12 41 41 H 1.09001 * 109.46923 * 60.00270 * 14 13 12 42 42 H 0.96994 * 120.00473 * 179.97438 * 18 17 15 43 43 H 1.09003 * 109.21769 * 322.83822 * 23 10 8 44 44 H 1.09002 * 109.18674 * 203.47575 * 23 10 8 45 45 H 1.09003 * 108.69311 * 171.57512 * 24 23 10 46 46 H 1.09001 * 108.58502 * 53.55915 * 24 23 10 47 47 H 1.08999 * 109.17327 * 305.21633 * 25 24 23 48 48 H 1.09000 * 109.17914 * 186.00019 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.7023 -0.2339 2.4859 6 6 2.1617 -0.8800 3.6177 7 6 2.9659 -2.0046 3.4879 8 6 3.2842 -2.4819 2.2335 9 6 2.8279 -1.8354 1.1022 10 6 4.1223 -3.7382 2.1011 11 1 4.1436 -4.0553 1.0584 12 7 3.5469 -4.8043 2.9320 13 6 2.4821 -5.5159 2.2123 14 6 1.9090 -6.6164 3.1075 15 6 0.8162 -7.3460 2.3694 16 1 0.5567 -7.0541 1.3625 17 6 0.1477 -8.3859 2.9798 18 7 0.4632 -8.7410 4.2061 19 14 -1.2063 -9.2908 2.0647 20 1 -0.6487 -9.8984 0.8298 21 1 -1.7635 -10.3580 2.9340 22 1 -2.2836 -8.3348 1.7030 23 6 5.5439 -3.4310 2.5729 24 6 5.6445 -3.5385 4.0873 25 6 4.8626 -2.4692 4.8207 26 8 3.4566 -2.6194 4.6000 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.0803 0.6437 2.5822 35 1 1.9002 -0.5098 4.5979 36 1 3.0906 -2.2056 0.1222 37 1 3.2078 -4.4365 3.8082 38 1 1.6912 -4.8142 1.9470 39 1 2.8914 -5.9617 1.3058 40 1 2.7000 -7.3179 3.3725 41 1 1.4997 -6.1708 4.0142 42 1 -0.0073 -9.4723 4.6356 43 1 5.8131 -2.4202 2.2663 44 1 6.2341 -4.1403 2.1161 45 1 6.6934 -3.4628 4.3740 46 1 5.2698 -4.5158 4.3918 47 1 5.1778 -1.4881 4.4654 48 1 5.0674 -2.5449 5.8886 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346802551.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:25:16 Heat of formation + Delta-G solvation = -52.998275 kcal Electronic energy + Delta-G solvation = -25584.732363 eV Core-core repulsion = 22216.885178 eV Total energy + Delta-G solvation = -3367.847184 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.86191 -39.26326 -37.74720 -35.79253 -35.61680 -34.09161 -32.33569 -31.14466 -29.87996 -27.99354 -27.96414 -26.19453 -25.35976 -23.71626 -23.09439 -22.44486 -21.29351 -20.25330 -18.87525 -18.43991 -17.52903 -17.01378 -16.56200 -16.50279 -15.82687 -15.71765 -15.46495 -15.23315 -14.98314 -14.70876 -14.42578 -14.32058 -14.17065 -13.96064 -13.73387 -13.49295 -13.22110 -13.06917 -12.98554 -12.83415 -12.65777 -12.44754 -12.27629 -12.03251 -11.94207 -11.74341 -11.73261 -11.55564 -11.45329 -11.37501 -11.21035 -10.87959 -10.57832 -9.82151 -9.34286 -9.22583 -8.21028 -6.33385 0.23517 0.36346 1.38016 1.42199 1.50166 2.39428 2.47055 2.90891 3.11659 3.42913 3.57897 3.80384 3.87891 3.97605 4.04676 4.13585 4.16315 4.31403 4.32894 4.37357 4.47491 4.50064 4.56018 4.59661 4.63034 4.74386 4.82250 4.86148 4.91031 4.97065 5.00235 5.04057 5.04436 5.07882 5.14260 5.21435 5.30629 5.38842 5.40149 5.41490 5.48205 5.50436 5.65864 5.67671 5.77925 5.83583 6.14639 6.29593 6.54545 6.58747 6.82929 7.35664 8.91250 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.011676 B = 0.004348 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.597886 B = 6438.090452 C = 7992.400503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.054 4.054 3 C -0.138 4.138 4 C -0.085 4.085 5 C -0.103 4.103 6 C -0.141 4.141 7 C 0.079 3.921 8 C -0.148 4.148 9 C -0.107 4.107 10 C 0.122 3.878 11 H 0.081 0.919 12 N -0.680 5.680 13 C 0.087 3.913 14 C 0.037 3.963 15 C -0.546 4.546 16 H 0.059 0.941 17 C 0.001 3.999 18 N -0.932 5.932 19 Si 0.969 3.031 20 H -0.264 1.264 21 H -0.280 1.280 22 H -0.268 1.268 23 C -0.097 4.097 24 C -0.153 4.153 25 C 0.065 3.935 26 O -0.349 6.349 27 H 0.060 0.940 28 H 0.039 0.961 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.147 0.853 35 H 0.138 0.862 36 H 0.133 0.867 37 H 0.347 0.653 38 H 0.005 0.995 39 H 0.058 0.942 40 H -0.005 1.005 41 H -0.019 1.019 42 H 0.265 0.735 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.096 0.904 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.864 22.817 -6.028 24.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.072 4.072 3 C -0.196 4.196 4 C -0.085 4.085 5 C -0.121 4.121 6 C -0.159 4.159 7 C 0.035 3.965 8 C -0.150 4.150 9 C -0.125 4.125 10 C 0.012 3.988 11 H 0.099 0.901 12 N -0.315 5.315 13 C -0.042 4.042 14 C 0.000 4.000 15 C -0.584 4.584 16 H 0.077 0.923 17 C -0.197 4.197 18 N -0.571 5.571 19 Si 0.792 3.208 20 H -0.189 1.189 21 H -0.205 1.205 22 H -0.193 1.193 23 C -0.135 4.135 24 C -0.191 4.191 25 C -0.009 4.009 26 O -0.266 6.266 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.165 0.835 35 H 0.156 0.844 36 H 0.151 0.849 37 H 0.170 0.830 38 H 0.023 0.977 39 H 0.077 0.923 40 H 0.014 0.986 41 H 0.000 1.000 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.114 0.886 46 H 0.083 0.917 47 H 0.083 0.917 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 8.232 22.119 -5.891 24.326 hybrid contribution -1.323 -0.318 -0.039 1.361 sum 6.909 21.802 -5.931 23.627 Atomic orbital electron populations 1.21868 0.94009 1.01470 1.02828 1.20148 0.96136 0.96725 0.94227 1.21822 1.01003 0.93986 1.02755 1.20175 0.97091 0.95441 0.95790 1.21063 0.99749 1.00352 0.90905 1.21462 1.00024 0.94011 1.00436 1.18699 0.98616 0.93380 0.85777 1.21177 1.01656 0.98750 0.93447 1.21087 0.97942 0.95664 0.97842 1.20863 0.94224 0.85906 0.97823 0.90063 1.60900 1.35491 1.27710 1.07373 1.21742 0.90968 0.94592 0.96892 1.18857 0.94264 0.92965 0.93962 1.21551 1.19223 1.16695 1.00973 0.92318 1.25997 0.99942 0.97940 0.95780 1.70109 1.43115 1.29521 1.14391 0.85457 0.78747 0.78054 0.78516 1.18905 1.20526 1.19268 1.21315 0.94168 1.01768 0.96221 1.21611 1.01453 1.00571 0.95447 1.22722 0.77745 0.98715 1.01747 1.86251 1.25745 1.73076 1.41553 0.92065 0.94131 0.90754 0.90261 0.92062 0.92791 0.91027 0.83549 0.84395 0.84949 0.82966 0.97716 0.92338 0.98622 1.00018 0.92675 0.90900 0.90533 0.88600 0.91667 0.91692 0.87045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.01 71.98 0.65 -1.78 16 2 C -0.05 -0.93 3.09 -11.54 -0.04 -0.96 16 3 C -0.14 -1.82 9.00 71.98 0.65 -1.18 16 4 C -0.08 -1.92 4.79 -19.82 -0.09 -2.02 16 5 C -0.10 -2.29 8.70 22.27 0.19 -2.10 16 6 C -0.14 -3.69 10.01 22.41 0.22 -3.46 16 7 C 0.08 2.39 5.29 22.35 0.12 2.51 16 8 C -0.15 -4.42 4.58 -19.69 -0.09 -4.51 16 9 C -0.11 -2.79 9.31 22.26 0.21 -2.59 16 10 C 0.12 3.80 2.69 44.42 0.12 3.92 16 11 H 0.08 2.49 7.61 -2.38 -0.02 2.47 16 12 N -0.68 -26.98 4.94 -494.12 -2.44 -29.42 16 13 C 0.09 4.07 5.43 86.30 0.47 4.54 16 14 C 0.04 2.13 5.23 29.85 0.16 2.29 16 15 C -0.55 -32.93 9.11 25.60 0.23 -32.69 16 16 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 17 C 0.00 0.08 5.46 84.65 0.46 0.55 16 18 N -0.93 -59.07 13.29 21.45 0.28 -58.78 16 19 Si 0.97 45.77 29.54 68.60 2.03 47.80 16 20 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 23 C -0.10 -2.39 5.55 30.28 0.17 -2.22 16 24 C -0.15 -3.68 5.27 29.80 0.16 -3.52 16 25 C 0.06 1.51 6.48 71.46 0.46 1.97 16 26 O -0.35 -10.99 8.01 -96.04 -0.77 -11.76 16 27 H 0.06 0.96 7.39 -2.39 -0.02 0.94 16 28 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.08 1.32 7.88 -2.39 -0.02 1.30 16 31 H 0.06 0.75 7.37 -2.39 -0.02 0.74 16 32 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.15 2.47 7.09 -2.91 -0.02 2.45 16 35 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 36 H 0.13 3.09 7.88 -2.91 -0.02 3.06 16 37 H 0.35 14.57 5.27 -89.69 -0.47 14.09 16 38 H 0.00 0.22 8.01 -2.39 -0.02 0.20 16 39 H 0.06 2.65 8.06 -2.39 -0.02 2.64 16 40 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 41 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 42 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 43 H 0.07 1.55 7.90 -2.39 -0.02 1.53 16 44 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.06 1.99 6.79 -2.39 -0.02 1.97 16 47 H 0.06 1.31 7.89 -2.39 -0.02 1.29 16 48 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -70.31 372.63 3.59 -66.72 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: 0.45 Total: 26.70 kcal Atomic # 6 Polarization: -45.29 SS G_CDS: 4.05 Total: -41.24 kcal Atomic # 7 Polarization: -86.05 SS G_CDS: -2.16 Total: -88.20 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: -0.77 Total: -11.76 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -70.31 3.59 -66.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346802551.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.717 kcal (2) G-P(sol) polarization free energy of solvation -70.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds