Wall clock time and date at job start Tue Mar 31 2020 08:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46906 * 110.99791 * 2 1 4 4 C 1.52994 * 109.47384 * 293.95557 * 3 2 1 5 5 C 1.50703 * 109.47312 * 180.02562 * 4 3 2 6 6 H 1.07994 * 119.99524 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99773 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00463 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99594 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46895 * 60.00254 * 9 7 5 11 11 H 1.48506 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47072 * 299.99916 * 9 7 5 13 13 C 1.46894 * 111.00101 * 123.95250 * 2 1 3 14 14 H 1.08998 * 112.91009 * 287.90291 * 13 2 1 15 15 C 1.53781 * 113.61216 * 59.15270 * 13 2 1 16 16 C 1.53779 * 87.17470 * 139.93588 * 15 13 2 17 17 H 1.08998 * 113.61984 * 220.06154 * 16 15 13 18 18 O 1.42905 * 113.61268 * 89.15679 * 16 15 13 19 19 C 1.35901 * 116.99865 * 87.09816 * 18 16 15 20 20 C 1.38734 * 120.05650 * 174.81689 * 19 18 16 21 21 C 1.38139 * 119.94299 * 179.70188 * 20 19 18 22 22 C 1.38265 * 120.05854 * 0.59136 * 21 20 19 23 23 C 1.38272 * 120.10996 * 359.68555 * 22 21 20 24 24 C 1.38148 * 120.05143 * 0.02562 * 23 22 21 25 25 C 1.53783 * 113.61163 * 156.64594 * 13 2 1 26 26 C 1.52996 * 113.61739 * 334.57049 * 25 13 2 27 27 C 1.53000 * 113.61143 * 105.39058 * 25 13 2 28 28 H 1.08997 * 109.46762 * 301.71971 * 1 2 3 29 29 H 1.08997 * 109.46927 * 61.71389 * 1 2 3 30 30 H 1.08997 * 109.46825 * 181.71707 * 1 2 3 31 31 H 1.08997 * 109.47254 * 53.95999 * 3 2 1 32 32 H 1.09001 * 109.46779 * 173.95258 * 3 2 1 33 33 H 1.09006 * 109.47297 * 300.00211 * 4 3 2 34 34 H 1.09001 * 109.47407 * 60.00085 * 4 3 2 35 35 H 0.97001 * 120.00171 * 180.02562 * 8 7 5 36 36 H 1.08997 * 113.61879 * 254.52914 * 15 13 2 37 37 H 1.09005 * 113.61323 * 25.34543 * 15 13 2 38 38 H 1.07997 * 120.02271 * 359.97438 * 20 19 18 39 39 H 1.08007 * 119.97220 * 180.27860 * 21 20 19 40 40 H 1.08001 * 119.94991 * 179.70367 * 22 21 20 41 41 H 1.07995 * 119.97223 * 179.97438 * 23 22 21 42 42 H 1.08007 * 120.02178 * 179.97438 * 24 23 22 43 43 H 1.09004 * 109.47090 * 65.62087 * 26 25 13 44 44 H 1.09000 * 109.47050 * 185.61678 * 26 25 13 45 45 H 1.08997 * 109.47203 * 305.61877 * 26 25 13 46 46 H 1.09003 * 109.47057 * 59.99752 * 27 25 13 47 47 H 1.09003 * 109.47014 * 180.02562 * 27 25 13 48 48 H 1.08997 * 109.47233 * 300.00219 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6315 2.0575 -1.3182 5 6 2.1720 3.4643 -1.3184 6 1 2.7200 3.8322 -0.4636 7 6 1.9670 4.2814 -2.4098 8 7 1.2993 3.8334 -3.4505 9 14 2.6365 6.0253 -2.4098 10 1 4.1136 5.9885 -2.2617 11 1 2.2832 6.6912 -3.6894 12 1 2.0442 6.7829 -1.2782 13 6 1.9955 -0.7659 1.1375 14 1 1.8594 -0.2564 2.0915 15 6 1.5418 -2.2352 1.1537 16 6 2.9679 -2.5913 1.6055 17 1 3.3611 -3.4944 1.1388 18 8 3.1387 -2.5788 3.0243 19 6 2.8468 -3.7265 3.6910 20 6 3.0914 -3.8201 5.0534 21 6 2.7880 -4.9857 5.7299 22 6 2.2524 -6.0627 5.0482 23 6 2.0129 -5.9740 3.6892 24 6 2.3090 -4.8085 3.0093 25 6 3.4240 -1.2915 0.9180 26 6 3.7894 -1.4758 -0.5562 27 6 4.4879 -0.5205 1.7020 28 1 -0.3633 0.5403 0.8742 29 1 -0.3633 0.4870 -0.9049 30 1 -0.3633 -1.0272 0.0308 31 1 1.5612 1.9274 0.8309 32 1 3.0798 1.3444 0.1083 33 1 2.0658 1.5016 -2.1492 34 1 0.5472 2.0846 -1.4264 35 1 1.1553 4.4081 -4.2185 36 1 0.7800 -2.4488 1.9035 37 1 1.2861 -2.6241 0.1680 38 1 3.5146 -2.9809 5.5853 39 1 2.9741 -5.0575 6.7914 40 1 2.0203 -6.9748 5.5780 41 1 1.5948 -6.8167 3.1589 42 1 2.1222 -4.7398 1.9477 43 1 3.8093 -0.5042 -1.0499 44 1 4.7720 -1.9417 -0.6314 45 1 3.0475 -2.1129 -1.0375 46 1 4.2756 -0.5912 2.7688 47 1 5.4700 -0.9468 1.4975 48 1 4.4760 0.5261 1.3978 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347466937.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:55 Heat of formation + Delta-G solvation = 6.868588 kcal Electronic energy + Delta-G solvation = -25182.796179 eV Core-core repulsion = 21817.545017 eV Total energy + Delta-G solvation = -3365.251162 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.98665 -39.26228 -37.06509 -35.19863 -32.85150 -31.28352 -30.68010 -29.95703 -29.07150 -27.11856 -26.24847 -24.98611 -23.43033 -22.83926 -21.88345 -21.66432 -19.88667 -18.69137 -17.78813 -16.55159 -16.09736 -15.89778 -15.66010 -15.19383 -14.76682 -14.51634 -14.37854 -14.31780 -13.67093 -13.58785 -13.31410 -12.97295 -12.67509 -12.62828 -12.18966 -12.09213 -12.00488 -11.91909 -11.73409 -11.64542 -11.27074 -11.16152 -11.03861 -10.88799 -10.84795 -10.66933 -10.51469 -10.06159 -9.87894 -9.75752 -9.25270 -9.19784 -9.10637 -8.34005 -8.31405 -7.70338 -5.98225 -4.00376 1.13358 1.25990 2.99777 3.34079 3.38439 3.40872 3.59630 4.38540 4.39550 4.49534 4.56535 4.65703 4.74439 4.75179 4.91513 5.09877 5.14092 5.18008 5.37448 5.37639 5.40177 5.52362 5.61236 5.72233 5.78189 5.79687 5.85045 5.93737 5.96149 6.08833 6.12581 6.16691 6.20944 6.23046 6.31189 6.31957 6.35271 6.47352 6.54638 6.57284 6.64510 6.74239 7.03074 7.35951 7.53128 7.61205 7.82469 7.92642 8.10222 8.45816 9.06810 9.63140 11.13024 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.031825 B = 0.002770 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.596780 B =10105.129380 C =10351.183148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.526 5.526 3 C 0.063 3.937 4 C 0.030 3.970 5 C -0.521 4.521 6 H 0.052 0.948 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 C 0.069 3.931 14 H 0.062 0.938 15 C -0.152 4.152 16 C 0.063 3.937 17 H 0.083 0.917 18 O -0.290 6.290 19 C 0.136 3.864 20 C -0.157 4.157 21 C -0.083 4.083 22 C -0.165 4.165 23 C -0.082 4.082 24 C -0.206 4.206 25 C -0.053 4.053 26 C -0.113 4.113 27 C -0.138 4.138 28 H 0.016 0.984 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.017 0.983 32 H 0.062 0.938 33 H 0.024 0.976 34 H 0.016 0.984 35 H 0.261 0.739 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.129 0.871 43 H 0.081 0.919 44 H 0.046 0.954 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.053 0.947 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.536 -19.673 14.253 24.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.250 5.250 3 C -0.064 4.064 4 C -0.007 4.007 5 C -0.560 4.560 6 H 0.071 0.929 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.719 3.281 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.203 1.203 13 C -0.040 4.040 14 H 0.080 0.920 15 C -0.190 4.190 16 C 0.006 3.994 17 H 0.101 0.899 18 O -0.203 6.203 19 C 0.091 3.909 20 C -0.175 4.175 21 C -0.101 4.101 22 C -0.183 4.183 23 C -0.100 4.100 24 C -0.225 4.225 25 C -0.053 4.053 26 C -0.170 4.170 27 C -0.195 4.195 28 H 0.035 0.965 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.035 0.965 32 H 0.080 0.920 33 H 0.042 0.958 34 H 0.034 0.966 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.120 0.880 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.147 0.853 43 H 0.100 0.900 44 H 0.065 0.935 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.072 0.928 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.692 -19.643 13.705 24.102 hybrid contribution -0.139 1.279 0.588 1.415 sum 2.553 -18.364 14.293 23.410 Atomic orbital electron populations 1.22319 0.88216 1.00316 1.01224 1.62319 1.07225 1.15961 1.39506 1.22358 0.98709 0.85148 1.00188 1.19069 0.96822 0.93929 0.90926 1.21161 1.35125 0.97916 1.01834 0.92945 1.24978 0.95309 0.98360 0.95595 1.69957 1.40795 1.36490 1.06022 0.86684 0.79467 0.84825 0.77167 1.20230 1.21298 1.20337 1.23115 0.94653 0.92914 0.93326 0.91979 1.23593 0.95948 0.97185 1.02278 1.23484 0.97824 0.99704 0.78384 0.89947 1.86077 1.81791 1.32030 1.20401 1.19093 0.94165 0.85660 0.92014 1.20467 1.05730 0.99579 0.91763 1.20946 0.97141 0.92366 0.99645 1.21037 1.03417 0.99212 0.94678 1.20967 0.97651 0.96961 0.94411 1.21353 1.05941 0.94334 1.00846 1.22028 0.95195 0.92126 0.95999 1.21409 0.99671 1.03765 0.92163 1.21693 0.97480 1.00314 1.00046 0.96545 0.90439 0.92696 0.96501 0.91962 0.95795 0.96593 0.92983 0.91248 0.87997 0.85343 0.85594 0.86158 0.85973 0.85283 0.90026 0.93468 0.92188 0.91964 0.92766 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.15 60.07 0.55 1.01 16 2 N -0.53 -9.26 3.76 -233.91 -0.88 -10.14 16 3 C 0.06 1.31 4.55 -3.82 -0.02 1.30 16 4 C 0.03 0.77 4.90 -27.88 -0.14 0.63 16 5 C -0.52 -14.74 9.11 -34.44 -0.31 -15.06 16 6 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 9 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.07 1.03 2.58 -66.90 -0.17 0.86 16 14 H 0.06 1.01 8.10 -51.93 -0.42 0.59 16 15 C -0.15 -1.89 5.58 -25.92 -0.14 -2.04 16 16 C 0.06 0.76 2.71 -25.83 -0.07 0.69 16 17 H 0.08 0.90 7.02 -51.93 -0.36 0.53 16 18 O -0.29 -3.73 8.62 -19.43 -0.17 -3.90 16 19 C 0.14 1.60 6.68 -39.22 -0.26 1.34 16 20 C -0.16 -1.65 9.99 -39.43 -0.39 -2.04 16 21 C -0.08 -0.73 10.04 -39.61 -0.40 -1.13 16 22 C -0.17 -1.41 10.04 -39.56 -0.40 -1.80 16 23 C -0.08 -0.74 10.04 -39.60 -0.40 -1.14 16 24 C -0.21 -2.16 8.95 -39.43 -0.35 -2.51 16 25 C -0.05 -0.72 0.98 -153.60 -0.15 -0.87 16 26 C -0.11 -1.54 8.37 37.16 0.31 -1.23 16 27 C -0.14 -1.87 9.02 37.16 0.34 -1.53 16 28 H 0.02 0.27 8.13 -51.93 -0.42 -0.15 16 29 H 0.08 1.44 6.55 -51.93 -0.34 1.10 16 30 H 0.05 0.78 7.04 -51.93 -0.37 0.42 16 31 H 0.02 0.36 8.11 -51.93 -0.42 -0.06 16 32 H 0.06 1.29 6.20 -51.93 -0.32 0.97 16 33 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.02 0.43 6.59 -51.93 -0.34 0.09 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.10 1.22 7.52 -51.93 -0.39 0.83 16 38 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 40 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 41 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.13 1.24 6.02 -52.48 -0.32 0.93 16 43 H 0.08 1.33 7.34 -51.93 -0.38 0.95 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.79 7.31 -51.93 -0.38 0.41 16 46 H 0.06 0.84 6.98 -51.93 -0.36 0.48 16 47 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.06 0.93 6.91 -51.93 -0.36 0.57 16 LS Contribution 375.36 15.07 5.66 5.66 Total: -1.00 -30.07 375.36 -9.89 -39.97 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -8.11 Total: -0.27 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: -2.11 Total: -21.92 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: -0.14 Total: -36.22 kcal Atomic # 8 Polarization: -3.73 SS G_CDS: -0.17 Total: -3.90 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.07 -9.89 -39.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347466937.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.836 kcal (2) G-P(sol) polarization free energy of solvation -30.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds