Wall clock time and date at job start Tue Mar 31 2020 08:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46906 * 110.99791 * 2 1 4 4 C 1.52994 * 109.47384 * 293.95557 * 3 2 1 5 5 C 1.50703 * 109.47312 * 180.02562 * 4 3 2 6 6 H 1.07994 * 119.99524 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99773 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00463 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99594 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46895 * 60.00254 * 9 7 5 11 11 H 1.48506 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47072 * 299.99916 * 9 7 5 13 13 C 1.46894 * 111.00101 * 123.95250 * 2 1 3 14 14 H 1.08998 * 112.91009 * 287.90291 * 13 2 1 15 15 C 1.53781 * 113.61216 * 59.15270 * 13 2 1 16 16 C 1.53779 * 87.17470 * 139.93588 * 15 13 2 17 17 H 1.08998 * 113.61984 * 220.06154 * 16 15 13 18 18 O 1.42905 * 113.61268 * 89.15679 * 16 15 13 19 19 C 1.35901 * 116.99865 * 87.09816 * 18 16 15 20 20 C 1.38734 * 120.05650 * 174.81689 * 19 18 16 21 21 C 1.38139 * 119.94299 * 179.70188 * 20 19 18 22 22 C 1.38265 * 120.05854 * 0.59136 * 21 20 19 23 23 C 1.38272 * 120.10996 * 359.68555 * 22 21 20 24 24 C 1.38148 * 120.05143 * 0.02562 * 23 22 21 25 25 C 1.53783 * 113.61163 * 156.64594 * 13 2 1 26 26 C 1.52996 * 113.61739 * 334.57049 * 25 13 2 27 27 C 1.53000 * 113.61143 * 105.39058 * 25 13 2 28 28 H 1.08997 * 109.46762 * 301.71971 * 1 2 3 29 29 H 1.08997 * 109.46927 * 61.71389 * 1 2 3 30 30 H 1.08997 * 109.46825 * 181.71707 * 1 2 3 31 31 H 1.08997 * 109.47254 * 53.95999 * 3 2 1 32 32 H 1.09001 * 109.46779 * 173.95258 * 3 2 1 33 33 H 1.09006 * 109.47297 * 300.00211 * 4 3 2 34 34 H 1.09001 * 109.47407 * 60.00085 * 4 3 2 35 35 H 0.97001 * 120.00171 * 180.02562 * 8 7 5 36 36 H 1.08997 * 113.61879 * 254.52914 * 15 13 2 37 37 H 1.09005 * 113.61323 * 25.34543 * 15 13 2 38 38 H 1.07997 * 120.02271 * 359.97438 * 20 19 18 39 39 H 1.08007 * 119.97220 * 180.27860 * 21 20 19 40 40 H 1.08001 * 119.94991 * 179.70367 * 22 21 20 41 41 H 1.07995 * 119.97223 * 179.97438 * 23 22 21 42 42 H 1.08007 * 120.02178 * 179.97438 * 24 23 22 43 43 H 1.09004 * 109.47090 * 65.62087 * 26 25 13 44 44 H 1.09000 * 109.47050 * 185.61678 * 26 25 13 45 45 H 1.08997 * 109.47203 * 305.61877 * 26 25 13 46 46 H 1.09003 * 109.47057 * 59.99752 * 27 25 13 47 47 H 1.09003 * 109.47014 * 180.02562 * 27 25 13 48 48 H 1.08997 * 109.47233 * 300.00219 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6315 2.0575 -1.3182 5 6 2.1720 3.4643 -1.3184 6 1 2.7200 3.8322 -0.4636 7 6 1.9670 4.2814 -2.4098 8 7 1.2993 3.8334 -3.4505 9 14 2.6365 6.0253 -2.4098 10 1 4.1136 5.9885 -2.2617 11 1 2.2832 6.6912 -3.6894 12 1 2.0442 6.7829 -1.2782 13 6 1.9955 -0.7659 1.1375 14 1 1.8594 -0.2564 2.0915 15 6 1.5418 -2.2352 1.1537 16 6 2.9679 -2.5913 1.6055 17 1 3.3611 -3.4944 1.1388 18 8 3.1387 -2.5788 3.0243 19 6 2.8468 -3.7265 3.6910 20 6 3.0914 -3.8201 5.0534 21 6 2.7880 -4.9857 5.7299 22 6 2.2524 -6.0627 5.0482 23 6 2.0129 -5.9740 3.6892 24 6 2.3090 -4.8085 3.0093 25 6 3.4240 -1.2915 0.9180 26 6 3.7894 -1.4758 -0.5562 27 6 4.4879 -0.5205 1.7020 28 1 -0.3633 0.5403 0.8742 29 1 -0.3633 0.4870 -0.9049 30 1 -0.3633 -1.0272 0.0308 31 1 1.5612 1.9274 0.8309 32 1 3.0798 1.3444 0.1083 33 1 2.0658 1.5016 -2.1492 34 1 0.5472 2.0846 -1.4264 35 1 1.1553 4.4081 -4.2185 36 1 0.7800 -2.4488 1.9035 37 1 1.2861 -2.6241 0.1680 38 1 3.5146 -2.9809 5.5853 39 1 2.9741 -5.0575 6.7914 40 1 2.0203 -6.9748 5.5780 41 1 1.5948 -6.8167 3.1589 42 1 2.1222 -4.7398 1.9477 43 1 3.8093 -0.5042 -1.0499 44 1 4.7720 -1.9417 -0.6314 45 1 3.0475 -2.1129 -1.0375 46 1 4.2756 -0.5912 2.7688 47 1 5.4700 -0.9468 1.4975 48 1 4.4760 0.5261 1.3978 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347466937.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:54 Heat of formation + Delta-G solvation = -8.342703 kcal Electronic energy + Delta-G solvation = -25183.455790 eV Core-core repulsion = 21817.545017 eV Total energy + Delta-G solvation = -3365.910773 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.98320 -40.16336 -38.09547 -36.59226 -34.89704 -32.21224 -31.85747 -30.90063 -30.52715 -28.22720 -27.69615 -26.61010 -24.75280 -23.64672 -22.96678 -22.72801 -21.60660 -19.63857 -18.86697 -18.40026 -17.13027 -16.86222 -16.72894 -16.55397 -16.35063 -15.73635 -15.53793 -15.32409 -14.93629 -14.69939 -14.31569 -14.31178 -14.00228 -13.87858 -13.65506 -13.29051 -13.25230 -13.08584 -12.95631 -12.86302 -12.72839 -12.54893 -12.44325 -12.38977 -12.05628 -11.87893 -11.84497 -11.59086 -11.43314 -11.22475 -10.91783 -10.86124 -10.52393 -9.90710 -9.19527 -9.10835 -8.19372 -6.30196 0.43726 0.53435 1.39245 1.42123 1.50001 2.11860 2.40071 2.88676 3.10678 3.13824 3.39625 3.44051 3.62265 3.96537 3.99868 4.05709 4.21141 4.29037 4.30539 4.35443 4.45204 4.53772 4.55678 4.58989 4.62176 4.72738 4.73900 4.78242 4.82588 4.86758 4.99629 5.02898 5.09251 5.10805 5.12822 5.13257 5.25254 5.40108 5.45492 5.48097 5.54523 5.57693 5.64352 5.68482 5.81101 5.93706 6.10124 6.33802 6.35014 6.53211 6.86494 7.38420 8.92261 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.031825 B = 0.002770 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.596780 B =10105.129380 C =10351.183148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.527 5.527 3 C 0.083 3.917 4 C 0.041 3.959 5 C -0.545 4.545 6 H 0.055 0.945 7 C 0.004 3.996 8 N -0.929 5.929 9 Si 0.962 3.038 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.269 1.269 13 C 0.060 3.940 14 H 0.049 0.951 15 C -0.138 4.138 16 C 0.077 3.923 17 H 0.101 0.899 18 O -0.306 6.306 19 C 0.110 3.890 20 C -0.173 4.173 21 C -0.085 4.085 22 C -0.165 4.165 23 C -0.087 4.087 24 C -0.215 4.215 25 C -0.056 4.056 26 C -0.107 4.107 27 C -0.134 4.134 28 H 0.015 0.985 29 H 0.052 0.948 30 H 0.085 0.915 31 H 0.008 0.992 32 H 0.062 0.938 33 H -0.004 1.004 34 H -0.007 1.007 35 H 0.264 0.736 36 H 0.073 0.927 37 H 0.111 0.889 38 H 0.129 0.871 39 H 0.150 0.850 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.135 0.865 43 H 0.048 0.952 44 H 0.067 0.933 45 H 0.065 0.935 46 H 0.060 0.940 47 H 0.067 0.933 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.007 -21.361 15.571 26.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.251 5.251 3 C -0.045 4.045 4 C 0.004 3.996 5 C -0.584 4.584 6 H 0.074 0.926 7 C -0.194 4.194 8 N -0.569 5.569 9 Si 0.787 3.213 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.194 1.194 13 C -0.049 4.049 14 H 0.067 0.933 15 C -0.176 4.176 16 C 0.020 3.980 17 H 0.119 0.881 18 O -0.220 6.220 19 C 0.066 3.934 20 C -0.192 4.192 21 C -0.103 4.103 22 C -0.183 4.183 23 C -0.105 4.105 24 C -0.234 4.234 25 C -0.057 4.057 26 C -0.165 4.165 27 C -0.191 4.191 28 H 0.033 0.967 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.026 0.974 32 H 0.081 0.919 33 H 0.014 0.986 34 H 0.011 0.989 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.130 0.870 38 H 0.147 0.853 39 H 0.168 0.832 40 H 0.164 0.836 41 H 0.162 0.838 42 H 0.153 0.847 43 H 0.067 0.933 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.086 0.914 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.164 -21.349 15.043 26.307 hybrid contribution -0.311 1.713 0.239 1.757 sum 2.853 -19.636 15.282 25.045 Atomic orbital electron populations 1.22303 0.87709 1.01924 0.99870 1.62253 1.07740 1.13872 1.41217 1.21946 0.98696 0.86832 0.97008 1.18868 0.94879 0.93458 0.92426 1.21583 1.35380 0.99215 1.02177 0.92635 1.25906 0.95429 1.03014 0.95073 1.70091 1.41871 1.38249 1.06704 0.85550 0.79144 0.79144 0.77504 1.19147 1.20684 1.19402 1.23225 0.96295 0.93859 0.91510 0.93321 1.23532 0.96592 0.94553 1.02941 1.23290 0.96961 0.99195 0.78506 0.88147 1.86041 1.82359 1.33090 1.20493 1.19341 0.95747 0.85793 0.92568 1.20688 1.06306 1.00494 0.91687 1.21280 0.96378 0.91747 1.00879 1.21420 1.02215 0.99965 0.94716 1.21309 0.97162 0.97130 0.94906 1.21504 1.06065 0.94520 1.01279 1.22042 0.94186 0.93195 0.96241 1.21330 1.01099 1.02170 0.91858 1.21643 0.98316 0.99301 0.99884 0.96679 0.92901 0.89621 0.97416 0.91928 0.98579 0.98884 0.92762 0.90793 0.87037 0.85332 0.83243 0.83636 0.83754 0.84710 0.93258 0.91452 0.91626 0.92125 0.91416 0.93666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.02 9.15 127.69 1.17 2.19 16 2 N -0.53 -18.93 3.76 -893.95 -3.36 -22.28 16 3 C 0.08 3.61 4.55 86.30 0.39 4.00 16 4 C 0.04 2.22 4.90 29.85 0.15 2.36 16 5 C -0.55 -31.63 9.11 25.60 0.23 -31.40 16 6 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 7 C 0.00 0.23 5.46 84.65 0.46 0.69 16 8 N -0.93 -57.06 13.29 21.45 0.28 -56.77 16 9 Si 0.96 44.82 29.54 68.60 2.03 46.85 16 10 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 13 C 0.06 1.78 2.58 45.44 0.12 1.89 16 14 H 0.05 1.60 8.10 -2.39 -0.02 1.58 16 15 C -0.14 -3.22 5.58 31.12 0.17 -3.05 16 16 C 0.08 1.74 2.71 31.18 0.08 1.83 16 17 H 0.10 1.93 7.02 -2.39 -0.02 1.92 16 18 O -0.31 -7.58 8.62 -92.44 -0.80 -8.38 16 19 C 0.11 2.45 6.68 22.51 0.15 2.61 16 20 C -0.17 -3.44 9.99 22.36 0.22 -3.22 16 21 C -0.09 -1.30 10.04 22.25 0.22 -1.08 16 22 C -0.17 -2.31 10.04 22.28 0.22 -2.09 16 23 C -0.09 -1.33 10.04 22.26 0.22 -1.11 16 24 C -0.22 -4.06 8.95 22.37 0.20 -3.86 16 25 C -0.06 -1.49 0.98 -51.60 -0.05 -1.54 16 26 C -0.11 -2.88 8.37 71.98 0.60 -2.27 16 27 C -0.13 -3.61 9.02 71.98 0.65 -2.96 16 28 H 0.01 0.50 8.13 -2.39 -0.02 0.48 16 29 H 0.05 2.04 6.55 -2.39 -0.02 2.03 16 30 H 0.09 2.35 7.04 -2.39 -0.02 2.33 16 31 H 0.01 0.34 8.11 -2.39 -0.02 0.32 16 32 H 0.06 2.70 6.20 -2.39 -0.01 2.69 16 33 H 0.00 -0.25 8.14 -2.38 -0.02 -0.27 16 34 H -0.01 -0.41 6.59 -2.39 -0.02 -0.43 16 35 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.11 2.41 7.52 -2.38 -0.02 2.40 16 38 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 39 H 0.15 1.48 8.06 -2.91 -0.02 1.45 16 40 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 41 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 42 H 0.14 2.27 6.02 -2.91 -0.02 2.26 16 43 H 0.05 1.64 7.34 -2.39 -0.02 1.63 16 44 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.06 1.66 7.31 -2.39 -0.02 1.64 16 46 H 0.06 1.63 6.98 -2.39 -0.02 1.61 16 47 H 0.07 1.60 8.14 -2.39 -0.02 1.59 16 48 H 0.04 1.35 6.91 -2.39 -0.02 1.34 16 Total: -1.00 -66.19 375.36 4.29 -61.89 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.91 Total: 15.69 kcal Atomic # 6 Polarization: -42.22 SS G_CDS: 5.22 Total: -37.00 kcal Atomic # 7 Polarization: -75.98 SS G_CDS: -3.07 Total: -79.05 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -0.80 Total: -8.38 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -66.19 4.29 -61.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347466937.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.550 kcal (2) G-P(sol) polarization free energy of solvation -66.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds