Wall clock time and date at job start Tue Mar 31 2020 08:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46903 * 110.99928 * 2 1 4 4 C 1.53003 * 109.46932 * 66.04279 * 3 2 1 5 5 C 1.50696 * 109.47067 * 179.97438 * 4 3 2 6 6 H 1.08001 * 119.99886 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00229 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00015 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00069 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46750 * 90.00554 * 9 7 5 11 11 H 1.48497 * 109.47014 * 209.99983 * 9 7 5 12 12 H 1.48496 * 109.47503 * 330.00473 * 9 7 5 13 13 C 1.46897 * 111.00362 * 236.04619 * 2 1 3 14 14 H 1.09004 * 112.90876 * 69.79774 * 13 2 1 15 15 C 1.53786 * 113.61215 * 298.55060 * 13 2 1 16 16 C 1.53778 * 87.07834 * 270.88207 * 15 13 2 17 17 H 1.08998 * 113.61361 * 89.11859 * 16 15 13 18 18 O 1.42903 * 113.61358 * 220.02230 * 16 15 13 19 19 C 1.35908 * 116.99982 * 254.10698 * 18 16 15 20 20 C 1.38733 * 120.05147 * 5.06170 * 19 18 16 21 21 C 1.38149 * 119.93850 * 179.70270 * 20 19 18 22 22 C 1.38259 * 120.05651 * 0.59223 * 21 20 19 23 23 C 1.38269 * 120.11090 * 359.68272 * 22 21 20 24 24 C 1.38143 * 120.06000 * 0.02562 * 23 22 21 25 25 C 1.53775 * 87.08332 * 334.56713 * 16 15 13 26 26 C 1.53002 * 113.61525 * 139.97954 * 25 16 15 27 27 C 1.53005 * 113.61820 * 270.80005 * 25 16 15 28 28 H 1.09006 * 109.46852 * 189.76082 * 1 2 3 29 29 H 1.08994 * 109.47410 * 309.75616 * 1 2 3 30 30 H 1.08994 * 109.46793 * 69.76371 * 1 2 3 31 31 H 1.08995 * 109.47361 * 186.04532 * 3 2 1 32 32 H 1.08993 * 109.46985 * 306.04689 * 3 2 1 33 33 H 1.08995 * 109.47304 * 300.00287 * 4 3 2 34 34 H 1.09003 * 109.47121 * 60.00484 * 4 3 2 35 35 H 0.97004 * 120.00380 * 179.97438 * 8 7 5 36 36 H 1.09007 * 113.61337 * 156.33239 * 15 13 2 37 37 H 1.08996 * 113.61695 * 25.43361 * 15 13 2 38 38 H 1.07996 * 120.03122 * 359.97438 * 20 19 18 39 39 H 1.07998 * 119.97074 * 180.31443 * 21 20 19 40 40 H 1.08003 * 119.94478 * 179.70038 * 22 21 20 41 41 H 1.08001 * 119.96824 * 180.02562 * 23 22 21 42 42 H 1.07995 * 120.03200 * 180.02562 * 24 23 22 43 43 H 1.09006 * 109.46872 * 64.34862 * 26 25 16 44 44 H 1.09006 * 109.47102 * 184.34538 * 26 25 16 45 45 H 1.08994 * 109.47296 * 304.34505 * 26 25 16 46 46 H 1.09004 * 109.46749 * 40.49846 * 27 25 16 47 47 H 1.09003 * 109.47085 * 160.49477 * 27 25 16 48 48 H 1.08999 * 109.47129 * 280.49373 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6314 2.0575 1.3183 5 6 2.1719 3.4641 1.3186 6 1 2.7200 3.8322 0.4638 7 6 1.9669 4.2813 2.4100 8 7 1.3000 3.8329 3.4511 9 14 2.6376 6.0247 2.4106 10 1 1.6211 6.9462 1.8424 11 1 2.9528 6.4333 3.8030 12 1 3.8719 6.0806 1.5868 13 6 1.9956 -0.7659 -1.1375 14 1 1.8239 -0.2750 -2.0955 15 6 1.5876 -2.2486 -1.1234 16 6 2.8557 -2.5083 -0.2931 17 1 2.7002 -2.4163 0.7817 18 8 3.5412 -3.7088 -0.6553 19 6 3.4351 -4.7613 0.1980 20 6 2.6033 -4.6770 1.3051 21 6 2.4925 -5.7505 2.1675 22 6 3.2191 -6.9036 1.9348 23 6 4.0531 -6.9879 0.8352 24 6 4.1629 -5.9195 -0.0336 25 6 3.4439 -1.2438 -0.9409 26 6 4.2491 -0.3764 0.0286 27 6 4.1852 -1.5147 -2.2517 28 1 -0.3633 -1.0129 0.1742 29 1 -0.3634 0.6572 0.7900 30 1 -0.3633 0.3554 -0.9642 31 1 3.0797 1.3445 -0.1082 32 1 1.5611 1.9273 -0.8309 33 1 0.5471 2.0844 1.4265 34 1 2.0657 1.5016 2.1492 35 1 1.1560 4.4077 4.2191 36 1 1.6069 -2.7162 -2.1080 37 1 0.6627 -2.4419 -0.5801 38 1 2.0395 -3.7747 1.4901 39 1 1.8413 -5.6873 3.0267 40 1 3.1348 -7.7400 2.6129 41 1 4.6193 -7.8898 0.6555 42 1 4.8141 -5.9859 -0.8925 43 1 5.1254 -0.9287 0.3684 44 1 4.5678 0.5348 -0.4778 45 1 3.6280 -0.1172 0.8860 46 1 3.6330 -2.2509 -2.8359 47 1 4.2687 -0.5883 -2.8201 48 1 5.1819 -1.8978 -2.0330 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347466938.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:58 Heat of formation + Delta-G solvation = 16.427695 kcal Electronic energy + Delta-G solvation = -25367.765437 eV Core-core repulsion = 22002.928789 eV Total energy + Delta-G solvation = -3364.836648 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.88055 -39.30613 -37.03682 -35.14509 -32.89224 -31.20109 -30.89360 -29.83260 -28.91124 -27.43415 -26.07818 -24.88654 -23.57561 -22.63769 -21.92264 -21.55431 -19.96800 -18.37567 -18.08626 -16.48845 -16.13811 -15.79588 -15.42814 -15.14183 -14.66946 -14.58730 -14.49226 -14.23776 -13.71202 -13.50168 -13.25900 -12.97771 -12.67413 -12.48532 -12.25052 -12.17246 -12.05499 -11.93651 -11.69315 -11.59694 -11.25569 -11.05656 -10.95499 -10.89945 -10.81853 -10.53281 -10.49713 -10.18414 -9.83678 -9.68089 -9.28676 -9.11645 -9.08256 -8.33853 -8.18607 -7.76674 -6.01119 -4.03348 1.26235 1.39123 3.27194 3.30801 3.37414 3.40421 3.72636 4.19841 4.45459 4.50689 4.62236 4.74559 4.79231 4.84965 4.99741 5.12931 5.28450 5.31228 5.34952 5.36727 5.53036 5.58848 5.64010 5.73245 5.77435 5.84599 5.90776 5.91730 5.93705 5.99503 6.07821 6.18941 6.23688 6.28372 6.32125 6.34444 6.43362 6.45396 6.52906 6.55370 6.72631 6.79829 6.99594 7.45646 7.50598 7.55113 7.78243 7.87906 8.06134 8.42177 9.03871 9.60466 11.10141 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.019321 B = 0.003182 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.850282 B = 8798.617222 C = 9229.764380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.524 5.524 3 C 0.047 3.953 4 C 0.030 3.970 5 C -0.521 4.521 6 H 0.053 0.947 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.067 3.933 14 H 0.054 0.946 15 C -0.149 4.149 16 C 0.073 3.927 17 H 0.109 0.891 18 O -0.302 6.302 19 C 0.137 3.863 20 C -0.208 4.208 21 C -0.079 4.079 22 C -0.167 4.167 23 C -0.084 4.084 24 C -0.160 4.160 25 C -0.063 4.063 26 C -0.143 4.143 27 C -0.121 4.121 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.018 0.982 31 H 0.079 0.921 32 H 0.017 0.983 33 H 0.016 0.984 34 H 0.023 0.977 35 H 0.260 0.740 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.133 0.867 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.047 0.953 44 H 0.060 0.940 45 H 0.088 0.912 46 H 0.057 0.943 47 H 0.056 0.944 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.065 -19.377 -7.863 21.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.249 5.249 3 C -0.079 4.079 4 C -0.008 4.008 5 C -0.560 4.560 6 H 0.071 0.929 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.719 3.281 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.199 1.199 13 C -0.042 4.042 14 H 0.072 0.928 15 C -0.187 4.187 16 C 0.018 3.982 17 H 0.127 0.873 18 O -0.215 6.215 19 C 0.091 3.909 20 C -0.227 4.227 21 C -0.097 4.097 22 C -0.185 4.185 23 C -0.103 4.103 24 C -0.179 4.179 25 C -0.064 4.064 26 C -0.200 4.200 27 C -0.178 4.178 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.036 0.964 31 H 0.097 0.903 32 H 0.035 0.965 33 H 0.034 0.966 34 H 0.042 0.958 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.151 0.849 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.142 0.858 42 H 0.145 0.855 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.107 0.893 46 H 0.076 0.924 47 H 0.075 0.925 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.261 -19.517 -7.444 21.142 hybrid contribution -0.198 1.500 -0.475 1.586 sum 3.063 -18.017 -7.919 19.918 Atomic orbital electron populations 1.22382 0.87869 1.01438 1.00671 1.62014 1.07423 1.16092 1.39349 1.22702 1.00230 0.84669 1.00298 1.19085 0.96798 0.94007 0.90865 1.21176 1.35131 0.97812 1.01870 0.92852 1.24981 0.95303 0.98396 0.95573 1.69967 1.40871 1.36362 1.06006 0.86618 0.79349 0.84951 0.77221 1.20751 1.21211 1.19878 1.22542 0.94998 0.93233 0.93471 0.92809 1.23574 0.98151 0.96010 1.00997 1.24287 0.92506 0.81380 1.00072 0.87325 1.86146 1.69841 1.20213 1.45323 1.19107 0.94008 0.88287 0.89477 1.21414 1.03315 1.00995 0.96964 1.20981 0.97857 0.92634 0.98256 1.21023 0.99747 0.98622 0.99121 1.20925 0.97701 0.97629 0.93996 1.20437 1.02762 0.92359 1.02318 1.22107 0.94822 0.93087 0.96378 1.21983 0.99469 0.98509 1.00054 1.21451 1.00169 1.01139 0.95063 0.92499 0.89994 0.96376 0.90259 0.96470 0.96570 0.95818 0.93013 0.89252 0.90442 0.84940 0.85909 0.86232 0.85759 0.85540 0.93367 0.92067 0.89348 0.92388 0.92515 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.20 60.07 0.55 0.95 16 2 N -0.52 -8.96 3.87 -233.91 -0.90 -9.86 16 3 C 0.05 0.96 3.98 -3.82 -0.02 0.94 16 4 C 0.03 0.75 4.92 -27.88 -0.14 0.61 16 5 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 6 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 9 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.07 0.96 2.84 -66.90 -0.19 0.78 16 14 H 0.05 0.79 8.10 -51.93 -0.42 0.37 16 15 C -0.15 -1.89 7.07 -25.92 -0.18 -2.07 16 16 C 0.07 0.98 3.04 -25.92 -0.08 0.90 16 17 H 0.11 1.56 5.89 -51.93 -0.31 1.25 16 18 O -0.30 -4.06 9.29 -19.45 -0.18 -4.24 16 19 C 0.14 1.76 6.68 -39.22 -0.26 1.50 16 20 C -0.21 -2.57 9.02 -39.43 -0.36 -2.92 16 21 C -0.08 -0.85 10.04 -39.61 -0.40 -1.25 16 22 C -0.17 -1.64 10.04 -39.56 -0.40 -2.03 16 23 C -0.08 -0.82 10.04 -39.60 -0.40 -1.22 16 24 C -0.16 -1.80 9.99 -39.43 -0.39 -2.20 16 25 C -0.06 -0.87 1.35 -153.70 -0.21 -1.07 16 26 C -0.14 -2.18 7.41 37.16 0.28 -1.90 16 27 C -0.12 -1.45 8.42 37.16 0.31 -1.14 16 28 H 0.06 0.79 6.62 -51.93 -0.34 0.45 16 29 H 0.08 1.49 6.09 -51.93 -0.32 1.18 16 30 H 0.02 0.28 8.12 -51.93 -0.42 -0.15 16 31 H 0.08 1.57 4.39 -51.93 -0.23 1.34 16 32 H 0.02 0.36 8.12 -51.93 -0.42 -0.07 16 33 H 0.02 0.43 6.37 -51.93 -0.33 0.10 16 34 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.09 1.04 7.63 -51.93 -0.40 0.65 16 37 H 0.08 0.96 6.50 -51.93 -0.34 0.62 16 38 H 0.13 1.63 5.89 -52.49 -0.31 1.32 16 39 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 40 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 41 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.94 7.03 -51.93 -0.36 0.57 16 45 H 0.09 1.56 6.10 -51.93 -0.32 1.24 16 46 H 0.06 0.66 7.25 -51.93 -0.38 0.28 16 47 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 370.87 15.07 5.59 5.59 Total: -1.00 -29.52 370.87 -9.88 -39.40 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -7.81 Total: 1.80 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: -2.29 Total: -23.36 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: -0.17 Total: -35.66 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -0.18 Total: -4.24 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.52 -9.88 -39.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347466938.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.832 kcal (2) G-P(sol) polarization free energy of solvation -29.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds