Wall clock time and date at job start Tue Mar 31 2020 08:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46903 * 110.99928 * 2 1 4 4 C 1.53003 * 109.46932 * 66.04279 * 3 2 1 5 5 C 1.50696 * 109.47067 * 179.97438 * 4 3 2 6 6 H 1.08001 * 119.99886 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00229 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00015 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00069 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46750 * 90.00554 * 9 7 5 11 11 H 1.48497 * 109.47014 * 209.99983 * 9 7 5 12 12 H 1.48496 * 109.47503 * 330.00473 * 9 7 5 13 13 C 1.46897 * 111.00362 * 236.04619 * 2 1 3 14 14 H 1.09004 * 112.90876 * 69.79774 * 13 2 1 15 15 C 1.53786 * 113.61215 * 298.55060 * 13 2 1 16 16 C 1.53778 * 87.07834 * 270.88207 * 15 13 2 17 17 H 1.08998 * 113.61361 * 89.11859 * 16 15 13 18 18 O 1.42903 * 113.61358 * 220.02230 * 16 15 13 19 19 C 1.35908 * 116.99982 * 254.10698 * 18 16 15 20 20 C 1.38733 * 120.05147 * 5.06170 * 19 18 16 21 21 C 1.38149 * 119.93850 * 179.70270 * 20 19 18 22 22 C 1.38259 * 120.05651 * 0.59223 * 21 20 19 23 23 C 1.38269 * 120.11090 * 359.68272 * 22 21 20 24 24 C 1.38143 * 120.06000 * 0.02562 * 23 22 21 25 25 C 1.53775 * 87.08332 * 334.56713 * 16 15 13 26 26 C 1.53002 * 113.61525 * 139.97954 * 25 16 15 27 27 C 1.53005 * 113.61820 * 270.80005 * 25 16 15 28 28 H 1.09006 * 109.46852 * 189.76082 * 1 2 3 29 29 H 1.08994 * 109.47410 * 309.75616 * 1 2 3 30 30 H 1.08994 * 109.46793 * 69.76371 * 1 2 3 31 31 H 1.08995 * 109.47361 * 186.04532 * 3 2 1 32 32 H 1.08993 * 109.46985 * 306.04689 * 3 2 1 33 33 H 1.08995 * 109.47304 * 300.00287 * 4 3 2 34 34 H 1.09003 * 109.47121 * 60.00484 * 4 3 2 35 35 H 0.97004 * 120.00380 * 179.97438 * 8 7 5 36 36 H 1.09007 * 113.61337 * 156.33239 * 15 13 2 37 37 H 1.08996 * 113.61695 * 25.43361 * 15 13 2 38 38 H 1.07996 * 120.03122 * 359.97438 * 20 19 18 39 39 H 1.07998 * 119.97074 * 180.31443 * 21 20 19 40 40 H 1.08003 * 119.94478 * 179.70038 * 22 21 20 41 41 H 1.08001 * 119.96824 * 180.02562 * 23 22 21 42 42 H 1.07995 * 120.03200 * 180.02562 * 24 23 22 43 43 H 1.09006 * 109.46872 * 64.34862 * 26 25 16 44 44 H 1.09006 * 109.47102 * 184.34538 * 26 25 16 45 45 H 1.08994 * 109.47296 * 304.34505 * 26 25 16 46 46 H 1.09004 * 109.46749 * 40.49846 * 27 25 16 47 47 H 1.09003 * 109.47085 * 160.49477 * 27 25 16 48 48 H 1.08999 * 109.47129 * 280.49373 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6314 2.0575 1.3183 5 6 2.1719 3.4641 1.3186 6 1 2.7200 3.8322 0.4638 7 6 1.9669 4.2813 2.4100 8 7 1.3000 3.8329 3.4511 9 14 2.6376 6.0247 2.4106 10 1 1.6211 6.9462 1.8424 11 1 2.9528 6.4333 3.8030 12 1 3.8719 6.0806 1.5868 13 6 1.9956 -0.7659 -1.1375 14 1 1.8239 -0.2750 -2.0955 15 6 1.5876 -2.2486 -1.1234 16 6 2.8557 -2.5083 -0.2931 17 1 2.7002 -2.4163 0.7817 18 8 3.5412 -3.7088 -0.6553 19 6 3.4351 -4.7613 0.1980 20 6 2.6033 -4.6770 1.3051 21 6 2.4925 -5.7505 2.1675 22 6 3.2191 -6.9036 1.9348 23 6 4.0531 -6.9879 0.8352 24 6 4.1629 -5.9195 -0.0336 25 6 3.4439 -1.2438 -0.9409 26 6 4.2491 -0.3764 0.0286 27 6 4.1852 -1.5147 -2.2517 28 1 -0.3633 -1.0129 0.1742 29 1 -0.3634 0.6572 0.7900 30 1 -0.3633 0.3554 -0.9642 31 1 3.0797 1.3445 -0.1082 32 1 1.5611 1.9273 -0.8309 33 1 0.5471 2.0844 1.4265 34 1 2.0657 1.5016 2.1492 35 1 1.1560 4.4077 4.2191 36 1 1.6069 -2.7162 -2.1080 37 1 0.6627 -2.4419 -0.5801 38 1 2.0395 -3.7747 1.4901 39 1 1.8413 -5.6873 3.0267 40 1 3.1348 -7.7400 2.6129 41 1 4.6193 -7.8898 0.6555 42 1 4.8141 -5.9859 -0.8925 43 1 5.1254 -0.9287 0.3684 44 1 4.5678 0.5348 -0.4778 45 1 3.6280 -0.1172 0.8860 46 1 3.6330 -2.2509 -2.8359 47 1 4.2687 -0.5883 -2.8201 48 1 5.1819 -1.8978 -2.0330 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347466938.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:57 Heat of formation + Delta-G solvation = 1.542621 kcal Electronic energy + Delta-G solvation = -25368.410902 eV Core-core repulsion = 22002.928789 eV Total energy + Delta-G solvation = -3365.482113 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.95185 -40.27620 -38.09087 -36.54311 -34.87911 -32.44358 -31.89024 -30.85644 -30.40543 -28.58295 -27.40519 -26.49502 -24.95823 -23.49588 -23.12717 -22.61951 -21.63781 -19.35156 -19.24214 -18.42068 -17.23698 -16.69914 -16.61185 -16.55160 -16.30955 -15.79329 -15.65696 -15.32399 -14.96253 -14.53877 -14.42289 -14.29818 -13.95348 -13.78538 -13.75330 -13.37526 -13.23503 -13.05860 -12.99933 -12.86871 -12.75499 -12.45874 -12.40053 -12.34074 -12.09761 -11.93764 -11.72247 -11.46421 -11.35455 -11.21357 -10.99704 -10.87794 -10.50514 -9.90832 -9.16202 -9.07280 -8.19247 -6.29709 0.43672 0.54595 1.39885 1.40903 1.51961 2.30821 2.40086 2.89034 2.94911 3.14429 3.43062 3.44499 3.67339 3.89583 3.98752 4.06803 4.25895 4.28609 4.30184 4.38884 4.49441 4.54250 4.56745 4.60242 4.62108 4.70720 4.77091 4.81407 4.82638 4.88774 4.93827 4.97115 5.07399 5.11014 5.13789 5.16443 5.21066 5.40359 5.45293 5.48199 5.54015 5.56472 5.64681 5.69311 5.81614 5.94135 6.09901 6.32895 6.34493 6.56036 6.87666 7.39131 8.92644 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.019321 B = 0.003182 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.850282 B = 8798.617222 C = 9229.764380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.531 5.531 3 C 0.066 3.934 4 C 0.040 3.960 5 C -0.541 4.541 6 H 0.058 0.942 7 C 0.003 3.997 8 N -0.931 5.931 9 Si 0.962 3.038 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.263 1.263 13 C 0.063 3.937 14 H 0.060 0.940 15 C -0.135 4.135 16 C 0.077 3.923 17 H 0.093 0.907 18 O -0.307 6.307 19 C 0.112 3.888 20 C -0.226 4.226 21 C -0.090 4.090 22 C -0.166 4.166 23 C -0.083 4.083 24 C -0.169 4.169 25 C -0.063 4.063 26 C -0.139 4.139 27 C -0.115 4.115 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.028 0.972 31 H 0.084 0.916 32 H 0.013 0.987 33 H -0.007 1.007 34 H -0.008 1.008 35 H 0.263 0.737 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.123 0.877 39 H 0.137 0.863 40 H 0.146 0.854 41 H 0.155 0.845 42 H 0.137 0.863 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.062 0.938 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.925 -20.705 -9.172 22.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.255 5.255 3 C -0.061 4.061 4 C 0.002 3.998 5 C -0.580 4.580 6 H 0.076 0.924 7 C -0.195 4.195 8 N -0.571 5.571 9 Si 0.787 3.213 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.187 1.187 13 C -0.046 4.046 14 H 0.078 0.922 15 C -0.173 4.173 16 C 0.021 3.979 17 H 0.110 0.890 18 O -0.220 6.220 19 C 0.067 3.933 20 C -0.244 4.244 21 C -0.108 4.108 22 C -0.184 4.184 23 C -0.100 4.100 24 C -0.187 4.187 25 C -0.064 4.064 26 C -0.196 4.196 27 C -0.172 4.172 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.102 0.898 32 H 0.031 0.969 33 H 0.011 0.989 34 H 0.011 0.989 35 H 0.072 0.928 36 H 0.125 0.875 37 H 0.098 0.902 38 H 0.141 0.859 39 H 0.155 0.845 40 H 0.164 0.836 41 H 0.173 0.827 42 H 0.155 0.845 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.081 0.919 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.120 -20.863 -8.767 23.002 hybrid contribution -0.466 1.793 -0.007 1.853 sum 3.654 -19.070 -8.774 21.307 Atomic orbital electron populations 1.22348 0.87294 1.02296 1.00108 1.61889 1.08027 1.14287 1.41346 1.22315 1.00515 0.86169 0.97078 1.18890 0.94870 0.93496 0.92497 1.21609 1.35165 0.99051 1.02145 0.92360 1.25913 0.95494 1.03006 0.95116 1.70104 1.42115 1.38115 1.06736 0.85494 0.79046 0.79356 0.77442 1.19878 1.20823 1.18715 1.22576 0.95720 0.93922 0.92390 0.92211 1.23522 0.97846 0.94184 1.01735 1.24096 0.92901 0.81608 0.99284 0.88959 1.86106 1.70094 1.20229 1.45620 1.19375 0.95219 0.88741 0.89981 1.21476 1.03871 1.01383 0.97688 1.21257 0.98366 0.92692 0.98476 1.21398 0.98783 0.98837 0.99393 1.21322 0.97345 0.98137 0.93238 1.20717 1.02682 0.92228 1.03108 1.22164 0.94300 0.92882 0.97020 1.21876 0.99435 0.98877 0.99401 1.21416 1.00097 1.01745 0.93947 0.90060 0.92857 0.95387 0.89802 0.96902 0.98851 0.98940 0.92847 0.87521 0.90205 0.85897 0.84534 0.83624 0.82745 0.84464 0.92682 0.92335 0.92282 0.91434 0.91879 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 9.20 127.69 1.17 2.07 16 2 N -0.53 -18.46 3.87 -893.95 -3.46 -21.92 16 3 C 0.07 2.76 3.98 86.30 0.34 3.10 16 4 C 0.04 2.11 4.92 29.85 0.15 2.25 16 5 C -0.54 -30.78 9.11 25.60 0.23 -30.55 16 6 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 7 C 0.00 0.15 5.46 84.65 0.46 0.62 16 8 N -0.93 -56.80 13.29 21.45 0.28 -56.52 16 9 Si 0.96 44.35 29.54 68.60 2.03 46.38 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 12 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 13 C 0.06 1.76 2.84 45.44 0.13 1.89 16 14 H 0.06 1.65 8.10 -2.39 -0.02 1.63 16 15 C -0.14 -3.23 7.07 31.12 0.22 -3.01 16 16 C 0.08 2.04 3.04 31.12 0.09 2.13 16 17 H 0.09 2.75 5.89 -2.39 -0.01 2.73 16 18 O -0.31 -8.01 9.29 -92.52 -0.86 -8.87 16 19 C 0.11 2.81 6.68 22.51 0.15 2.96 16 20 C -0.23 -5.55 9.02 22.37 0.20 -5.35 16 21 C -0.09 -1.85 10.04 22.25 0.22 -1.62 16 22 C -0.17 -2.86 10.04 22.28 0.22 -2.64 16 23 C -0.08 -1.40 10.04 22.25 0.22 -1.17 16 24 C -0.17 -3.53 9.99 22.37 0.22 -3.31 16 25 C -0.06 -1.69 1.35 -51.66 -0.07 -1.76 16 26 C -0.14 -4.28 7.41 71.98 0.53 -3.75 16 27 C -0.11 -2.54 8.42 71.98 0.61 -1.94 16 28 H 0.08 2.22 6.62 -2.38 -0.02 2.21 16 29 H 0.05 2.04 6.09 -2.39 -0.01 2.02 16 30 H 0.03 0.84 8.12 -2.39 -0.02 0.82 16 31 H 0.08 3.40 4.39 -2.39 -0.01 3.39 16 32 H 0.01 0.54 8.12 -2.39 -0.02 0.52 16 33 H -0.01 -0.39 6.37 -2.39 -0.02 -0.40 16 34 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 35 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 36 H 0.11 2.23 7.63 -2.38 -0.02 2.21 16 37 H 0.08 1.88 6.50 -2.39 -0.02 1.86 16 38 H 0.12 3.15 5.89 -2.91 -0.02 3.13 16 39 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 40 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 41 H 0.15 1.62 8.06 -2.91 -0.02 1.59 16 42 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 43 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 44 H 0.06 1.80 7.03 -2.38 -0.02 1.78 16 45 H 0.06 2.17 6.10 -2.39 -0.01 2.16 16 46 H 0.07 1.38 7.25 -2.38 -0.02 1.36 16 47 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -64.82 370.87 4.04 -60.77 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 0.93 Total: 20.23 kcal Atomic # 6 Polarization: -45.20 SS G_CDS: 5.12 Total: -40.08 kcal Atomic # 7 Polarization: -75.27 SS G_CDS: -3.17 Total: -78.44 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -0.86 Total: -8.87 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -64.82 4.04 -60.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347466938.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.317 kcal (2) G-P(sol) polarization free energy of solvation -64.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds