Wall clock time and date at job start Tue Mar 31 2020 09:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35902 * 116.99775 * 2 1 4 4 C 1.38747 * 120.09227 * 0.02562 * 3 2 1 5 5 C 1.38004 * 119.87742 * 180.02562 * 4 3 2 6 6 C 1.38545 * 120.29213 * 359.97438 * 5 4 3 7 7 C 1.38259 * 119.93596 * 359.97438 * 6 5 4 8 8 C 1.38409 * 119.90473 * 0.02562 * 7 6 5 9 9 C 1.51385 * 109.75357 * 180.02562 * 7 6 5 10 10 H 1.08994 * 110.30498 * 258.16314 * 9 7 6 11 11 N 1.46901 * 110.29923 * 136.11091 * 9 7 6 12 12 C 1.46911 * 110.99871 * 86.45555 * 11 9 7 13 13 C 1.53004 * 109.47134 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.46974 * 300.00107 * 13 12 11 15 15 C 1.53007 * 109.46888 * 59.99942 * 13 12 11 16 16 C 1.52990 * 109.46836 * 179.97438 * 13 12 11 17 17 C 1.50705 * 109.46939 * 180.02562 * 16 13 12 18 18 H 1.08000 * 119.99981 * 359.97438 * 17 16 13 19 19 C 1.37877 * 120.00282 * 180.02562 * 17 16 13 20 20 N 1.31517 * 119.99655 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00122 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47223 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47215 * 120.00006 * 21 19 17 24 24 H 1.48507 * 109.47000 * 239.99551 * 21 19 17 25 25 C 1.54340 * 105.17327 * 17.18913 * 9 7 6 26 26 C 1.51395 * 130.32430 * 179.68749 * 6 5 4 27 27 H 1.08999 * 109.46820 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47234 * 300.00090 * 1 2 3 29 29 H 1.09008 * 109.47167 * 60.00118 * 1 2 3 30 30 H 1.07996 * 120.06166 * 0.04388 * 4 3 2 31 31 H 1.08003 * 119.85572 * 179.97438 * 5 4 3 32 32 H 1.08009 * 119.91023 * 180.02562 * 8 7 6 33 33 H 1.00900 * 111.00824 * 322.50287 * 11 9 7 34 34 H 1.08994 * 109.47117 * 299.99607 * 12 11 9 35 35 H 1.08998 * 109.46652 * 59.99982 * 12 11 9 36 36 H 1.09005 * 109.47364 * 60.00191 * 14 13 12 37 37 H 1.09001 * 109.46598 * 179.97438 * 14 13 12 38 38 H 1.08996 * 109.47368 * 299.99679 * 14 13 12 39 39 H 1.08997 * 109.46763 * 60.00060 * 15 13 12 40 40 H 1.08999 * 109.46634 * 179.97438 * 15 13 12 41 41 H 1.09000 * 109.47057 * 300.00121 * 15 13 12 42 42 H 1.08998 * 109.47799 * 299.99659 * 16 13 12 43 43 H 1.08996 * 109.47183 * 60.00519 * 16 13 12 44 44 H 0.97000 * 120.00004 * 180.02562 * 20 19 17 45 45 H 1.09005 * 110.82189 * 91.86534 * 25 9 7 46 46 H 1.08996 * 110.81870 * 215.40900 * 25 9 7 47 47 H 1.09005 * 110.30024 * 281.71115 * 26 6 5 48 48 H 1.09001 * 110.29857 * 43.85964 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2921 2.3757 0.0005 5 6 1.9232 3.6030 0.0000 6 6 3.3066 3.6775 -0.0005 7 6 4.0599 2.5181 0.0000 8 6 3.4298 1.2858 0.0005 9 6 5.5334 2.8654 -0.0001 10 1 5.9497 2.7476 -1.0005 11 7 6.2572 2.0163 0.9554 12 6 6.6618 0.7490 0.3321 13 6 7.4116 -0.1062 1.3556 14 6 8.6546 0.6458 1.8356 15 6 6.4970 -0.3934 2.5481 16 6 7.8324 -1.4262 0.7066 17 6 8.5704 -2.2688 1.7148 18 1 8.7243 -1.8995 2.7180 19 6 9.0500 -3.5108 1.3563 20 7 8.8630 -3.9603 0.1346 21 14 9.9654 -4.5548 2.6059 22 1 10.0423 -3.8269 3.8978 23 1 9.2441 -5.8380 2.8022 24 1 11.3383 -4.8296 2.1105 25 6 5.6001 4.3434 0.4394 26 6 4.2229 4.8826 -0.0075 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8901 30 1 0.2134 2.3221 0.0017 31 1 1.3360 4.5095 0.0000 32 1 4.0183 0.3800 0.0014 33 1 5.7049 1.8517 1.7836 34 1 5.7763 0.2135 -0.0102 35 1 7.3137 0.9537 -0.5171 36 1 8.3544 1.5861 2.2981 37 1 9.1885 0.0367 2.5651 38 1 9.3062 0.8504 0.9861 39 1 5.6115 -0.9291 2.2060 40 1 7.0311 -1.0030 3.2770 41 1 6.1968 0.5469 3.0105 42 1 6.9466 -1.9618 0.3650 43 1 8.4838 -1.2220 -0.1431 44 1 9.2001 -4.8342 -0.1176 45 1 5.7190 4.4212 1.5202 46 1 6.4045 4.8656 -0.0785 47 1 4.2865 5.3036 -1.0110 48 1 3.8650 5.6338 0.6966 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348218178.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:09:52 Heat of formation + Delta-G solvation = -28.176715 kcal Electronic energy + Delta-G solvation = -25233.291417 eV Core-core repulsion = 21866.520577 eV Total energy + Delta-G solvation = -3366.770841 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.66530 -38.92869 -37.27338 -35.19182 -33.25159 -32.03171 -30.73259 -28.64789 -27.70453 -26.89262 -26.27616 -26.10972 -24.36369 -22.86033 -22.21384 -20.87627 -20.51810 -18.06348 -17.64770 -16.40369 -16.21615 -15.91907 -15.72666 -15.29575 -15.19664 -14.52037 -14.29919 -13.82064 -13.67368 -13.45129 -13.14059 -12.73876 -12.61541 -12.55492 -12.17325 -12.02296 -11.96083 -11.69910 -11.65905 -11.37666 -11.23365 -10.96400 -10.86792 -10.83019 -10.71531 -10.58863 -10.44374 -10.20726 -10.04414 -9.63644 -9.00693 -8.94327 -8.76525 -8.27610 -8.15841 -7.95577 -5.91975 -3.91757 1.22183 1.34746 3.12980 3.35366 3.43114 3.46792 3.62464 4.35008 4.42590 4.52556 4.68697 4.72757 4.89498 4.95043 4.97989 5.15332 5.20905 5.23401 5.28262 5.41183 5.44114 5.56031 5.64943 5.73087 5.76975 5.84116 5.93350 6.04098 6.05888 6.14276 6.23603 6.26517 6.38125 6.39113 6.57195 6.60146 6.64429 6.71576 6.85866 6.88572 7.26668 7.27722 7.31023 7.32395 7.44419 7.71112 7.76431 7.91275 8.08731 8.53345 9.13899 9.70881 11.19766 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.015747 B = 0.003634 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.649619 B = 7702.208812 C = 9040.193669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.314 6.314 3 C 0.126 3.874 4 C -0.209 4.209 5 C -0.073 4.073 6 C -0.131 4.131 7 C -0.086 4.086 8 C -0.134 4.134 9 C 0.124 3.876 10 H 0.093 0.907 11 N -0.674 5.674 12 C 0.065 3.935 13 C -0.058 4.058 14 C -0.116 4.116 15 C -0.129 4.129 16 C 0.033 3.967 17 C -0.505 4.505 18 H 0.059 0.941 19 C 0.054 3.946 20 N -0.897 5.897 21 Si 0.886 3.114 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.286 1.286 25 C -0.105 4.105 26 C -0.078 4.078 27 H 0.099 0.901 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.126 0.874 31 H 0.120 0.880 32 H 0.134 0.866 33 H 0.342 0.658 34 H 0.028 0.972 35 H 0.066 0.934 36 H 0.042 0.958 37 H 0.053 0.947 38 H 0.039 0.961 39 H 0.040 0.960 40 H 0.063 0.937 41 H 0.032 0.968 42 H 0.013 0.987 43 H 0.015 0.985 44 H 0.258 0.742 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.767 16.899 -0.851 23.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.228 6.228 3 C 0.081 3.919 4 C -0.227 4.227 5 C -0.091 4.091 6 C -0.132 4.132 7 C -0.088 4.088 8 C -0.153 4.153 9 C 0.014 3.986 10 H 0.111 0.889 11 N -0.304 5.304 12 C -0.064 4.064 13 C -0.058 4.058 14 C -0.173 4.173 15 C -0.186 4.186 16 C -0.004 4.004 17 C -0.543 4.543 18 H 0.077 0.923 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.715 3.285 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.212 1.212 25 C -0.143 4.143 26 C -0.115 4.115 27 H 0.118 0.882 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.144 0.856 31 H 0.138 0.862 32 H 0.151 0.849 33 H 0.162 0.838 34 H 0.046 0.954 35 H 0.085 0.915 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.082 0.918 41 H 0.051 0.949 42 H 0.031 0.969 43 H 0.033 0.967 44 H 0.067 0.933 45 H 0.098 0.902 46 H 0.097 0.903 47 H 0.095 0.905 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.013 16.849 -1.061 22.592 hybrid contribution -0.807 -1.212 0.431 1.518 sum -15.820 15.638 -0.629 22.253 Atomic orbital electron populations 1.23038 0.78578 1.03946 1.01069 1.86122 1.21173 1.26782 1.88689 1.18848 0.92110 0.84164 0.96785 1.21074 0.99713 0.92181 1.09766 1.20344 0.93215 0.96859 0.98685 1.20496 0.93239 0.95954 1.03473 1.21301 0.98037 0.92234 0.97190 1.20055 0.91340 0.98277 1.05649 1.21239 0.86154 0.93726 0.97492 0.88930 1.60759 1.44401 1.17555 1.07637 1.22256 0.98080 0.88337 0.97696 1.20623 0.94507 0.96471 0.94210 1.21597 0.96913 0.98335 1.00449 1.21770 0.99016 0.99083 0.98750 1.19125 0.96120 0.89529 0.95635 1.21283 1.34546 1.00806 0.97689 0.92253 1.25013 0.96515 0.97983 0.95097 1.69982 1.46924 1.18981 1.17868 0.86622 0.79617 0.80464 0.81818 1.19781 1.21223 1.21188 1.22334 0.95934 0.93786 1.02250 1.21043 0.93683 0.95131 1.01664 0.88219 0.92782 0.92828 0.85568 0.86224 0.84863 0.83809 0.95390 0.91549 0.93895 0.92756 0.94190 0.94085 0.91760 0.94879 0.96900 0.96704 0.93272 0.90217 0.90329 0.90504 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.21 10.50 -19.43 -0.20 -4.42 16 3 C 0.13 1.71 6.68 -39.26 -0.26 1.45 16 4 C -0.21 -2.33 9.04 -39.48 -0.36 -2.69 16 5 C -0.07 -0.78 10.03 -39.55 -0.40 -1.18 16 6 C -0.13 -1.51 6.14 -104.16 -0.64 -2.15 16 7 C -0.09 -1.14 5.52 -104.21 -0.57 -1.71 16 8 C -0.13 -1.97 9.62 -39.39 -0.38 -2.35 16 9 C 0.12 1.59 3.18 -67.83 -0.22 1.37 16 10 H 0.09 1.21 7.86 -51.93 -0.41 0.80 16 11 N -0.67 -9.87 5.47 -106.84 -0.58 -10.46 16 12 C 0.06 1.13 4.42 -3.82 -0.02 1.11 16 13 C -0.06 -1.17 0.60 -154.51 -0.09 -1.26 16 14 C -0.12 -2.26 8.06 37.16 0.30 -1.96 16 15 C -0.13 -2.47 7.89 37.16 0.29 -2.18 16 16 C 0.03 0.85 4.04 -27.89 -0.11 0.74 16 17 C -0.50 -13.98 7.65 -34.44 -0.26 -14.24 16 18 H 0.06 1.60 5.68 -52.49 -0.30 1.31 16 19 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 20 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 21 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 25 C -0.11 -1.08 6.78 -25.24 -0.17 -1.25 16 26 C -0.08 -0.72 6.78 -26.75 -0.18 -0.90 16 27 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 29 H 0.05 0.38 7.67 -51.92 -0.40 -0.01 16 30 H 0.13 1.09 6.31 -52.49 -0.33 0.76 16 31 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 32 H 0.13 2.15 5.86 -52.48 -0.31 1.85 16 33 H 0.34 5.08 6.53 -39.29 -0.26 4.83 16 34 H 0.03 0.51 5.64 -51.93 -0.29 0.21 16 35 H 0.07 1.19 8.07 -51.93 -0.42 0.78 16 36 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 37 H 0.05 1.14 6.62 -51.93 -0.34 0.79 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 1.33 6.62 -51.93 -0.34 0.99 16 41 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 42 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 46 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 370.09 15.07 5.58 5.58 Total: -1.00 -30.80 370.09 -9.56 -40.36 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -7.89 Total: 3.04 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: -2.18 Total: -24.51 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.15 Total: -36.89 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.20 Total: -4.42 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.80 -9.56 -40.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348218178.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.185 kcal (2) G-P(sol) polarization free energy of solvation -30.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds