Wall clock time and date at job start Tue Mar 31 2020 09:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35902 * 116.99775 * 2 1 4 4 C 1.38747 * 120.09227 * 0.02562 * 3 2 1 5 5 C 1.38004 * 119.87742 * 180.02562 * 4 3 2 6 6 C 1.38545 * 120.29213 * 359.97438 * 5 4 3 7 7 C 1.38259 * 119.93596 * 359.97438 * 6 5 4 8 8 C 1.38409 * 119.90473 * 0.02562 * 7 6 5 9 9 C 1.51385 * 109.75357 * 180.02562 * 7 6 5 10 10 H 1.08994 * 110.30498 * 258.16314 * 9 7 6 11 11 N 1.46901 * 110.29923 * 136.11091 * 9 7 6 12 12 C 1.46911 * 110.99871 * 86.45555 * 11 9 7 13 13 C 1.53004 * 109.47134 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.46974 * 300.00107 * 13 12 11 15 15 C 1.53007 * 109.46888 * 59.99942 * 13 12 11 16 16 C 1.52990 * 109.46836 * 179.97438 * 13 12 11 17 17 C 1.50705 * 109.46939 * 180.02562 * 16 13 12 18 18 H 1.08000 * 119.99981 * 359.97438 * 17 16 13 19 19 C 1.37877 * 120.00282 * 180.02562 * 17 16 13 20 20 N 1.31517 * 119.99655 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00122 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47223 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47215 * 120.00006 * 21 19 17 24 24 H 1.48507 * 109.47000 * 239.99551 * 21 19 17 25 25 C 1.54340 * 105.17327 * 17.18913 * 9 7 6 26 26 C 1.51395 * 130.32430 * 179.68749 * 6 5 4 27 27 H 1.08999 * 109.46820 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47234 * 300.00090 * 1 2 3 29 29 H 1.09008 * 109.47167 * 60.00118 * 1 2 3 30 30 H 1.07996 * 120.06166 * 0.04388 * 4 3 2 31 31 H 1.08003 * 119.85572 * 179.97438 * 5 4 3 32 32 H 1.08009 * 119.91023 * 180.02562 * 8 7 6 33 33 H 1.00900 * 111.00824 * 322.50287 * 11 9 7 34 34 H 1.08994 * 109.47117 * 299.99607 * 12 11 9 35 35 H 1.08998 * 109.46652 * 59.99982 * 12 11 9 36 36 H 1.09005 * 109.47364 * 60.00191 * 14 13 12 37 37 H 1.09001 * 109.46598 * 179.97438 * 14 13 12 38 38 H 1.08996 * 109.47368 * 299.99679 * 14 13 12 39 39 H 1.08997 * 109.46763 * 60.00060 * 15 13 12 40 40 H 1.08999 * 109.46634 * 179.97438 * 15 13 12 41 41 H 1.09000 * 109.47057 * 300.00121 * 15 13 12 42 42 H 1.08998 * 109.47799 * 299.99659 * 16 13 12 43 43 H 1.08996 * 109.47183 * 60.00519 * 16 13 12 44 44 H 0.97000 * 120.00004 * 180.02562 * 20 19 17 45 45 H 1.09005 * 110.82189 * 91.86534 * 25 9 7 46 46 H 1.08996 * 110.81870 * 215.40900 * 25 9 7 47 47 H 1.09005 * 110.30024 * 281.71115 * 26 6 5 48 48 H 1.09001 * 110.29857 * 43.85964 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2921 2.3757 0.0005 5 6 1.9232 3.6030 0.0000 6 6 3.3066 3.6775 -0.0005 7 6 4.0599 2.5181 0.0000 8 6 3.4298 1.2858 0.0005 9 6 5.5334 2.8654 -0.0001 10 1 5.9497 2.7476 -1.0005 11 7 6.2572 2.0163 0.9554 12 6 6.6618 0.7490 0.3321 13 6 7.4116 -0.1062 1.3556 14 6 8.6546 0.6458 1.8356 15 6 6.4970 -0.3934 2.5481 16 6 7.8324 -1.4262 0.7066 17 6 8.5704 -2.2688 1.7148 18 1 8.7243 -1.8995 2.7180 19 6 9.0500 -3.5108 1.3563 20 7 8.8630 -3.9603 0.1346 21 14 9.9654 -4.5548 2.6059 22 1 10.0423 -3.8269 3.8978 23 1 9.2441 -5.8380 2.8022 24 1 11.3383 -4.8296 2.1105 25 6 5.6001 4.3434 0.4394 26 6 4.2229 4.8826 -0.0075 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8901 30 1 0.2134 2.3221 0.0017 31 1 1.3360 4.5095 0.0000 32 1 4.0183 0.3800 0.0014 33 1 5.7049 1.8517 1.7836 34 1 5.7763 0.2135 -0.0102 35 1 7.3137 0.9537 -0.5171 36 1 8.3544 1.5861 2.2981 37 1 9.1885 0.0367 2.5651 38 1 9.3062 0.8504 0.9861 39 1 5.6115 -0.9291 2.2060 40 1 7.0311 -1.0030 3.2770 41 1 6.1968 0.5469 3.0105 42 1 6.9466 -1.9618 0.3650 43 1 8.4838 -1.2220 -0.1431 44 1 9.2001 -4.8342 -0.1176 45 1 5.7190 4.4212 1.5202 46 1 6.4045 4.8656 -0.0785 47 1 4.2865 5.3036 -1.0110 48 1 3.8650 5.6338 0.6966 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348218178.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:09:51 Heat of formation + Delta-G solvation = -45.569940 kcal Electronic energy + Delta-G solvation = -25234.045644 eV Core-core repulsion = 21866.520577 eV Total energy + Delta-G solvation = -3367.525067 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.58985 -39.91503 -38.77400 -36.28754 -34.82268 -33.68037 -31.77118 -29.50518 -29.13058 -28.33977 -27.90598 -27.26398 -25.87203 -24.01634 -23.74817 -21.73788 -21.48879 -19.52686 -18.80388 -18.34209 -17.32515 -16.90581 -16.65195 -16.61416 -16.22499 -16.12777 -15.52260 -15.21842 -14.89935 -14.65893 -14.36061 -14.21416 -13.89644 -13.69529 -13.56215 -13.46581 -13.02500 -12.86089 -12.77445 -12.70533 -12.50491 -12.43142 -12.31191 -12.23942 -12.13123 -12.09346 -11.81850 -11.75987 -11.40063 -11.39616 -10.87442 -10.69874 -10.51849 -9.96194 -9.27976 -8.96941 -8.14347 -6.21665 0.29301 0.42515 1.39688 1.40192 1.52960 2.31665 2.43344 2.69908 3.19476 3.26746 3.57476 3.71993 3.87294 4.08450 4.11172 4.19119 4.27828 4.32975 4.35174 4.36861 4.38863 4.39737 4.51452 4.67177 4.68645 4.76146 4.81905 4.87279 4.95381 5.02371 5.06870 5.08716 5.18186 5.19884 5.21190 5.35103 5.36042 5.41815 5.50281 5.52975 5.58124 5.65135 5.66895 5.79840 5.86489 5.92086 6.09241 6.36192 6.44799 6.47773 6.93522 7.45731 8.98418 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.015747 B = 0.003634 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.649619 B = 7702.208812 C = 9040.193669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.346 6.346 3 C 0.108 3.892 4 C -0.203 4.203 5 C -0.070 4.070 6 C -0.132 4.132 7 C -0.101 4.101 8 C -0.164 4.164 9 C 0.120 3.880 10 H 0.084 0.916 11 N -0.664 5.664 12 C 0.079 3.921 13 C -0.054 4.054 14 C -0.105 4.105 15 C -0.120 4.120 16 C 0.041 3.959 17 C -0.513 4.513 18 H 0.067 0.933 19 C -0.005 4.005 20 N -0.939 5.939 21 Si 0.957 3.043 22 H -0.260 1.260 23 H -0.283 1.283 24 H -0.281 1.281 25 C -0.098 4.098 26 C -0.070 4.070 27 H 0.112 0.888 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.154 0.846 31 H 0.154 0.846 32 H 0.102 0.898 33 H 0.342 0.658 34 H 0.014 0.986 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.038 0.962 38 H 0.032 0.968 39 H 0.029 0.971 40 H 0.048 0.952 41 H 0.065 0.935 42 H -0.021 1.021 43 H -0.016 1.016 44 H 0.259 0.741 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.092 0.908 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.967 19.705 0.553 26.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.261 6.261 3 C 0.063 3.937 4 C -0.222 4.222 5 C -0.088 4.088 6 C -0.133 4.133 7 C -0.103 4.103 8 C -0.183 4.183 9 C 0.010 3.990 10 H 0.102 0.898 11 N -0.294 5.294 12 C -0.050 4.050 13 C -0.054 4.054 14 C -0.162 4.162 15 C -0.177 4.177 16 C 0.003 3.997 17 C -0.551 4.551 18 H 0.085 0.915 19 C -0.202 4.202 20 N -0.580 5.580 21 Si 0.783 3.217 22 H -0.184 1.184 23 H -0.209 1.209 24 H -0.207 1.207 25 C -0.136 4.136 26 C -0.107 4.107 27 H 0.130 0.870 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.172 0.828 31 H 0.172 0.828 32 H 0.120 0.880 33 H 0.162 0.838 34 H 0.032 0.968 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.057 0.943 38 H 0.051 0.949 39 H 0.048 0.952 40 H 0.067 0.933 41 H 0.083 0.917 42 H -0.003 1.003 43 H 0.003 0.997 44 H 0.068 0.932 45 H 0.099 0.901 46 H 0.110 0.890 47 H 0.110 0.890 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.224 19.677 0.353 25.505 hybrid contribution -0.527 -2.085 -0.071 2.151 sum -16.752 17.592 0.282 24.293 Atomic orbital electron populations 1.23335 0.76257 1.05376 1.02465 1.86078 1.23758 1.27372 1.88880 1.19035 0.91965 0.85173 0.97521 1.21399 1.01016 0.91424 1.08356 1.20767 0.93163 0.97864 0.96959 1.20860 0.93954 0.96053 1.02430 1.21330 0.98387 0.92459 0.98140 1.20024 0.92216 0.97853 1.08252 1.21389 0.85870 0.95055 0.96698 0.89817 1.60746 1.45054 1.15651 1.07921 1.21932 0.97055 0.89411 0.96625 1.20483 0.95672 0.94330 0.94937 1.21489 0.95945 0.99008 0.99802 1.21661 0.97965 1.00280 0.97795 1.18996 0.93884 0.92087 0.94722 1.21647 1.34111 1.01149 0.98208 0.91512 1.25943 0.97591 0.99574 0.97063 1.70129 1.48297 1.19552 1.20053 0.85504 0.78112 0.78520 0.79586 1.18356 1.20865 1.20691 1.22326 0.97361 0.91453 1.02432 1.21077 0.92103 0.94450 1.03117 0.86987 0.91317 0.91319 0.82823 0.82795 0.88044 0.83780 0.96751 0.92434 0.91173 0.94252 0.94896 0.95229 0.93256 0.91669 1.00298 0.99719 0.93186 0.90133 0.88969 0.89000 0.88786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.35 -9.56 10.50 -92.45 -0.97 -10.53 16 3 C 0.11 2.96 6.68 22.48 0.15 3.11 16 4 C -0.20 -4.12 9.04 22.34 0.20 -3.92 16 5 C -0.07 -1.26 10.03 22.29 0.22 -1.04 16 6 C -0.13 -2.73 6.14 -19.57 -0.12 -2.85 16 7 C -0.10 -2.66 5.52 -19.60 -0.11 -2.77 16 8 C -0.16 -5.07 9.62 22.40 0.22 -4.86 16 9 C 0.12 2.99 3.18 44.84 0.14 3.13 16 10 H 0.08 2.21 7.86 -2.39 -0.02 2.19 16 11 N -0.66 -19.30 5.47 -491.94 -2.69 -21.99 16 12 C 0.08 2.89 4.42 86.30 0.38 3.27 16 13 C -0.05 -2.25 0.60 -52.18 -0.03 -2.28 16 14 C -0.11 -4.10 8.06 71.98 0.58 -3.51 16 15 C -0.12 -4.66 7.89 71.98 0.57 -4.09 16 16 C 0.04 2.20 4.04 29.85 0.12 2.32 16 17 C -0.51 -29.26 7.65 25.60 0.20 -29.06 16 18 H 0.07 3.65 5.68 -2.91 -0.02 3.63 16 19 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 20 N -0.94 -58.92 13.29 21.45 0.28 -58.64 16 21 Si 0.96 45.49 29.54 68.60 2.03 47.51 16 22 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 23 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 24 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 25 C -0.10 -1.75 6.78 31.56 0.21 -1.53 16 26 C -0.07 -1.05 6.78 30.58 0.21 -0.84 16 27 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.07 0.88 7.66 -2.39 -0.02 0.86 16 29 H 0.07 0.87 7.67 -2.38 -0.02 0.85 16 30 H 0.15 2.16 6.31 -2.91 -0.02 2.14 16 31 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 32 H 0.10 3.67 5.86 -2.91 -0.02 3.65 16 33 H 0.34 9.94 6.53 -89.69 -0.59 9.36 16 34 H 0.01 0.57 5.64 -2.39 -0.01 0.55 16 35 H 0.06 2.19 8.07 -2.39 -0.02 2.17 16 36 H 0.07 2.34 7.60 -2.38 -0.02 2.32 16 37 H 0.04 1.63 6.62 -2.39 -0.02 1.61 16 38 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.05 2.05 6.62 -2.39 -0.02 2.03 16 41 H 0.06 2.10 6.57 -2.39 -0.02 2.08 16 42 H -0.02 -1.29 8.14 -2.39 -0.02 -1.31 16 43 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 44 H 0.26 15.35 8.31 -92.71 -0.77 14.57 16 45 H 0.08 1.45 8.09 -2.38 -0.02 1.44 16 46 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 48 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -70.01 370.09 3.53 -66.48 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 0.36 Total: 20.50 kcal Atomic # 6 Polarization: -47.86 SS G_CDS: 4.52 Total: -43.34 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -2.41 Total: -80.63 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -0.97 Total: -10.53 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -70.01 3.53 -66.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348218178.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.912 kcal (2) G-P(sol) polarization free energy of solvation -70.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds