Wall clock time and date at job start Tue Mar 31 2020 07:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35907 * 117.00004 * 2 1 4 4 C 1.38746 * 120.09105 * 0.02562 * 3 2 1 5 5 C 1.38004 * 119.87911 * 179.97438 * 4 3 2 6 6 C 1.38545 * 120.29081 * 0.02695 * 5 4 3 7 7 C 1.38258 * 119.93438 * 359.97438 * 6 5 4 8 8 C 1.38417 * 119.90865 * 359.97438 * 7 6 5 9 9 C 1.51384 * 109.75877 * 179.97438 * 7 6 5 10 10 C 1.52992 * 110.30376 * 136.12961 * 9 7 6 11 11 C 1.53002 * 110.30289 * 258.18586 * 9 7 6 12 12 C 1.54603 * 105.18159 * 17.21677 * 9 7 6 13 13 C 1.51392 * 130.32724 * 179.97438 * 6 5 4 14 14 H 1.09005 * 110.30051 * 43.80594 * 13 6 5 15 15 N 1.46890 * 110.30377 * 281.75654 * 13 6 5 16 16 C 1.46901 * 111.00688 * 87.77086 * 15 13 6 17 17 C 1.52992 * 109.47859 * 180.02562 * 16 15 13 18 18 C 1.52997 * 109.47482 * 179.97438 * 17 16 15 19 19 C 1.50701 * 109.47212 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00129 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99861 * 179.97438 * 19 18 17 22 22 N 1.31510 * 119.99913 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99734 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47432 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46890 * 120.00210 * 23 21 19 26 26 H 1.48501 * 109.47062 * 240.00257 * 23 21 19 27 27 H 1.08996 * 109.47499 * 299.99752 * 1 2 3 28 28 H 1.09001 * 109.47378 * 60.00341 * 1 2 3 29 29 H 1.08998 * 109.47128 * 179.97438 * 1 2 3 30 30 H 1.08006 * 120.06186 * 359.95299 * 4 3 2 31 31 H 1.07999 * 119.85274 * 180.02562 * 5 4 3 32 32 H 1.08006 * 119.91259 * 180.02562 * 8 7 6 33 33 H 1.09002 * 109.47678 * 61.45446 * 10 9 7 34 34 H 1.09009 * 109.47012 * 181.45509 * 10 9 7 35 35 H 1.09003 * 109.47502 * 301.45460 * 10 9 7 36 36 H 1.08998 * 109.47213 * 58.54287 * 11 9 7 37 37 H 1.08993 * 109.47253 * 178.54342 * 11 9 7 38 38 H 1.09001 * 109.47033 * 298.54244 * 11 9 7 39 39 H 1.09001 * 110.89974 * 215.42399 * 12 9 7 40 40 H 1.09003 * 110.84526 * 91.80005 * 12 9 7 41 41 H 1.00909 * 111.00262 * 323.81909 * 15 13 6 42 42 H 1.09002 * 109.46980 * 59.99769 * 16 15 13 43 43 H 1.09001 * 109.46628 * 300.00190 * 16 15 13 44 44 H 1.09002 * 109.47103 * 59.99734 * 17 16 15 45 45 H 1.08998 * 109.46862 * 300.00546 * 17 16 15 46 46 H 1.09002 * 109.47153 * 59.99783 * 18 17 16 47 47 H 1.09001 * 109.46832 * 299.99974 * 18 17 16 48 48 H 0.97002 * 119.99768 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2921 2.3758 0.0005 5 6 1.9232 3.6031 0.0011 6 6 3.3067 3.6775 0.0005 7 6 4.0599 2.5181 -0.0001 8 6 3.4299 1.2857 0.0005 9 6 5.5335 2.8652 -0.0012 10 6 6.2881 1.9801 0.9926 11 6 6.1164 2.7009 -1.4063 12 6 5.6011 4.3453 0.4403 13 6 4.2230 4.8826 0.0004 14 1 3.8649 5.6300 0.7084 15 7 4.3075 5.4585 -1.3483 16 6 3.2367 6.4394 -1.5700 17 6 3.3571 7.0155 -2.9822 18 6 2.2414 8.0367 -3.2133 19 6 2.3604 8.6046 -4.6042 20 1 3.1523 8.2703 -5.2580 21 6 1.4576 9.5502 -5.0422 22 7 0.4930 9.9568 -4.2462 23 14 1.6047 10.2536 -6.7665 24 1 2.7655 9.6352 -7.4560 25 1 0.3638 9.9610 -7.5279 26 1 1.8014 11.7233 -6.6863 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2134 2.3221 0.0002 31 1 1.3360 4.5095 0.0019 32 1 4.0182 0.3799 0.0005 33 1 6.1903 0.9357 0.6962 34 1 7.3420 2.2586 0.9997 35 1 5.8699 2.1154 1.9901 36 1 5.5770 3.3447 -2.1010 37 1 7.1703 2.9787 -1.3971 38 1 6.0172 1.6622 -1.7216 39 1 6.4047 4.8691 -0.0774 40 1 5.7199 4.4226 1.5211 41 1 4.2871 4.7357 -2.0521 42 1 3.3244 7.2443 -0.8402 43 1 2.2684 5.9516 -1.4584 44 1 3.2691 6.2105 -3.7118 45 1 4.3254 7.5031 -3.0943 46 1 2.3289 8.8418 -2.4838 47 1 1.2732 7.5485 -3.1014 48 1 -0.1419 10.6224 -4.5543 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353331325.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:50 Heat of formation + Delta-G solvation = -34.466699 kcal Electronic energy + Delta-G solvation = -24829.644807 eV Core-core repulsion = 21462.601212 eV Total energy + Delta-G solvation = -3367.043595 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.97970 -39.24710 -36.07018 -35.61356 -33.53885 -31.85915 -30.52682 -29.75716 -28.41027 -27.41801 -27.17916 -25.81556 -23.36658 -22.88811 -22.23171 -20.74770 -20.03987 -19.45726 -17.48425 -16.55904 -16.23305 -16.09795 -15.93081 -15.23926 -15.03402 -14.45358 -14.38731 -14.12242 -13.70554 -13.52493 -13.45290 -13.21886 -12.90866 -12.67920 -12.33745 -12.30320 -12.11777 -11.91436 -11.76561 -11.45797 -11.31418 -11.30270 -11.28094 -10.84717 -10.83679 -10.57413 -10.53145 -10.49577 -10.33534 -9.67853 -9.31089 -9.01477 -8.90172 -8.43451 -8.32473 -7.93548 -5.97623 -3.99316 1.23675 1.32571 3.04089 3.32652 3.39955 3.44732 3.61387 4.29658 4.36465 4.47361 4.60290 4.71566 4.82724 4.89200 4.91606 4.92910 5.09632 5.17452 5.20541 5.21759 5.38354 5.40007 5.47593 5.53199 5.60034 5.68704 5.76347 5.83744 5.87122 5.92635 5.95563 6.01958 6.02710 6.16636 6.20878 6.25250 6.34756 6.36961 6.61334 6.62631 6.76320 6.81387 7.17105 7.24082 7.38533 7.66587 7.71672 7.86738 8.03218 8.46871 9.08160 9.64591 11.13879 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.014605 B = 0.003148 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.711509 B = 8892.771817 C =10132.743488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.127 3.873 4 C -0.208 4.208 5 C -0.057 4.057 6 C -0.161 4.161 7 C -0.038 4.038 8 C -0.141 4.141 9 C -0.026 4.026 10 C -0.137 4.137 11 C -0.134 4.134 12 C -0.102 4.102 13 C 0.128 3.872 14 H 0.083 0.917 15 N -0.672 5.672 16 C 0.057 3.943 17 C -0.107 4.107 18 C 0.023 3.977 19 C -0.517 4.517 20 H 0.055 0.945 21 C 0.055 3.945 22 N -0.897 5.897 23 Si 0.891 3.109 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.284 1.284 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.098 0.902 30 H 0.128 0.872 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.338 0.662 42 H 0.067 0.933 43 H 0.025 0.975 44 H 0.043 0.957 45 H 0.056 0.944 46 H 0.016 0.984 47 H 0.013 0.987 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.135 -20.012 12.904 24.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.082 3.918 4 C -0.227 4.227 5 C -0.076 4.076 6 C -0.164 4.164 7 C -0.039 4.039 8 C -0.160 4.160 9 C -0.026 4.026 10 C -0.195 4.195 11 C -0.192 4.192 12 C -0.140 4.140 13 C 0.018 3.982 14 H 0.102 0.898 15 N -0.302 5.302 16 C -0.072 4.072 17 C -0.145 4.145 18 C -0.015 4.015 19 C -0.555 4.555 20 H 0.074 0.926 21 C -0.146 4.146 22 N -0.536 5.536 23 Si 0.719 3.281 24 H -0.197 1.197 25 H -0.211 1.211 26 H -0.210 1.210 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.117 0.883 30 H 0.146 0.854 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.109 0.891 40 H 0.092 0.908 41 H 0.157 0.843 42 H 0.085 0.915 43 H 0.043 0.957 44 H 0.062 0.938 45 H 0.075 0.925 46 H 0.034 0.966 47 H 0.031 0.969 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.545 -19.584 13.074 24.440 hybrid contribution -1.388 -0.059 -1.063 1.750 sum 5.157 -19.644 12.010 23.595 Atomic orbital electron populations 1.23045 0.78369 1.03790 1.01526 1.86034 1.21375 1.26995 1.88927 1.18802 0.92063 0.84052 0.96923 1.21124 0.99945 0.92123 1.09525 1.20526 0.93428 0.97193 0.96437 1.21325 0.93724 0.97175 1.04127 1.20280 0.95546 0.91986 0.96086 1.19701 0.90974 0.97633 1.07654 1.20191 0.89999 0.95834 0.96567 1.21841 0.99903 0.99189 0.98526 1.21844 1.00840 1.01715 0.94781 1.22539 0.97510 0.93282 1.00693 1.20993 0.92538 0.92124 0.92584 0.89843 1.60931 1.48753 1.18309 1.02237 1.22189 0.91105 0.94084 0.99784 1.21615 1.01253 0.99074 0.92518 1.19059 0.92645 0.93122 0.96673 1.21304 1.12704 1.22290 0.99245 0.92635 1.25031 0.95394 0.96703 0.97437 1.69977 1.16336 1.31437 1.35893 0.86550 0.77929 0.78868 0.84747 1.19710 1.21084 1.21018 0.92673 0.92522 0.88335 0.85426 0.85863 0.85724 0.92621 0.92153 0.92526 0.91733 0.91916 0.92792 0.89076 0.90842 0.84258 0.91450 0.95715 0.93808 0.92543 0.96598 0.96898 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.63 10.50 -19.45 -0.20 -3.83 16 3 C 0.13 1.56 6.68 -39.26 -0.26 1.30 16 4 C -0.21 -2.52 9.04 -39.48 -0.36 -2.88 16 5 C -0.06 -0.75 9.65 -39.55 -0.38 -1.13 16 6 C -0.16 -2.09 5.44 -104.16 -0.57 -2.65 16 7 C -0.04 -0.45 4.92 -104.21 -0.51 -0.97 16 8 C -0.14 -1.69 9.69 -39.38 -0.38 -2.08 16 9 C -0.03 -0.26 0.89 -154.49 -0.14 -0.40 16 10 C -0.14 -1.16 8.31 37.15 0.31 -0.85 16 11 C -0.13 -1.34 8.48 37.16 0.32 -1.02 16 12 C -0.10 -1.08 5.82 -25.20 -0.15 -1.23 16 13 C 0.13 1.63 3.17 -67.84 -0.22 1.41 16 14 H 0.08 1.09 7.84 -51.93 -0.41 0.68 16 15 N -0.67 -9.88 6.20 -106.86 -0.66 -10.54 16 16 C 0.06 0.99 5.52 -3.83 -0.02 0.97 16 17 C -0.11 -2.24 5.41 -26.74 -0.14 -2.39 16 18 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 19 C -0.52 -14.91 9.11 -34.44 -0.31 -15.23 16 20 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 21 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 22 N -0.90 -27.27 13.29 55.43 0.74 -26.54 16 23 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 24 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 27 H 0.05 0.37 7.66 -51.93 -0.40 -0.02 16 28 H 0.06 0.42 7.67 -51.93 -0.40 0.02 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.13 1.30 6.31 -52.48 -0.33 0.96 16 31 H 0.12 1.58 7.59 -52.49 -0.40 1.19 16 32 H 0.12 1.34 7.86 -52.48 -0.41 0.93 16 33 H 0.05 0.45 7.91 -51.93 -0.41 0.04 16 34 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16 35 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 36 H 0.06 0.73 6.19 -51.93 -0.32 0.41 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.09 0.98 7.85 -51.93 -0.41 0.57 16 40 H 0.07 0.70 7.91 -51.93 -0.41 0.29 16 41 H 0.34 4.99 6.62 -39.29 -0.26 4.73 16 42 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 43 H 0.02 0.44 7.26 -51.93 -0.38 0.06 16 44 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 379.27 15.07 5.72 5.72 Total: -1.00 -31.20 379.27 -9.79 -40.99 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -8.30 Total: 1.26 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: -2.06 Total: -23.98 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.07 Total: -37.08 kcal Atomic # 8 Polarization: -3.63 SS G_CDS: -0.20 Total: -3.83 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.20 -9.79 -40.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353331325.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.521 kcal (2) G-P(sol) polarization free energy of solvation -31.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds