Wall clock time and date at job start Tue Mar 31 2020 07:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35907 * 117.00004 * 2 1 4 4 C 1.38746 * 120.09105 * 0.02562 * 3 2 1 5 5 C 1.38004 * 119.87911 * 179.97438 * 4 3 2 6 6 C 1.38545 * 120.29081 * 0.02695 * 5 4 3 7 7 C 1.38258 * 119.93438 * 359.97438 * 6 5 4 8 8 C 1.38417 * 119.90865 * 359.97438 * 7 6 5 9 9 C 1.51384 * 109.75877 * 179.97438 * 7 6 5 10 10 C 1.52992 * 110.30376 * 136.12961 * 9 7 6 11 11 C 1.53002 * 110.30289 * 258.18586 * 9 7 6 12 12 C 1.54603 * 105.18159 * 17.21677 * 9 7 6 13 13 C 1.51392 * 130.32724 * 179.97438 * 6 5 4 14 14 H 1.09005 * 110.30051 * 43.80594 * 13 6 5 15 15 N 1.46890 * 110.30377 * 281.75654 * 13 6 5 16 16 C 1.46901 * 111.00688 * 87.77086 * 15 13 6 17 17 C 1.52992 * 109.47859 * 180.02562 * 16 15 13 18 18 C 1.52997 * 109.47482 * 179.97438 * 17 16 15 19 19 C 1.50701 * 109.47212 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00129 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99861 * 179.97438 * 19 18 17 22 22 N 1.31510 * 119.99913 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99734 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47432 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46890 * 120.00210 * 23 21 19 26 26 H 1.48501 * 109.47062 * 240.00257 * 23 21 19 27 27 H 1.08996 * 109.47499 * 299.99752 * 1 2 3 28 28 H 1.09001 * 109.47378 * 60.00341 * 1 2 3 29 29 H 1.08998 * 109.47128 * 179.97438 * 1 2 3 30 30 H 1.08006 * 120.06186 * 359.95299 * 4 3 2 31 31 H 1.07999 * 119.85274 * 180.02562 * 5 4 3 32 32 H 1.08006 * 119.91259 * 180.02562 * 8 7 6 33 33 H 1.09002 * 109.47678 * 61.45446 * 10 9 7 34 34 H 1.09009 * 109.47012 * 181.45509 * 10 9 7 35 35 H 1.09003 * 109.47502 * 301.45460 * 10 9 7 36 36 H 1.08998 * 109.47213 * 58.54287 * 11 9 7 37 37 H 1.08993 * 109.47253 * 178.54342 * 11 9 7 38 38 H 1.09001 * 109.47033 * 298.54244 * 11 9 7 39 39 H 1.09001 * 110.89974 * 215.42399 * 12 9 7 40 40 H 1.09003 * 110.84526 * 91.80005 * 12 9 7 41 41 H 1.00909 * 111.00262 * 323.81909 * 15 13 6 42 42 H 1.09002 * 109.46980 * 59.99769 * 16 15 13 43 43 H 1.09001 * 109.46628 * 300.00190 * 16 15 13 44 44 H 1.09002 * 109.47103 * 59.99734 * 17 16 15 45 45 H 1.08998 * 109.46862 * 300.00546 * 17 16 15 46 46 H 1.09002 * 109.47153 * 59.99783 * 18 17 16 47 47 H 1.09001 * 109.46832 * 299.99974 * 18 17 16 48 48 H 0.97002 * 119.99768 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2921 2.3758 0.0005 5 6 1.9232 3.6031 0.0011 6 6 3.3067 3.6775 0.0005 7 6 4.0599 2.5181 -0.0001 8 6 3.4299 1.2857 0.0005 9 6 5.5335 2.8652 -0.0012 10 6 6.2881 1.9801 0.9926 11 6 6.1164 2.7009 -1.4063 12 6 5.6011 4.3453 0.4403 13 6 4.2230 4.8826 0.0004 14 1 3.8649 5.6300 0.7084 15 7 4.3075 5.4585 -1.3483 16 6 3.2367 6.4394 -1.5700 17 6 3.3571 7.0155 -2.9822 18 6 2.2414 8.0367 -3.2133 19 6 2.3604 8.6046 -4.6042 20 1 3.1523 8.2703 -5.2580 21 6 1.4576 9.5502 -5.0422 22 7 0.4930 9.9568 -4.2462 23 14 1.6047 10.2536 -6.7665 24 1 2.7655 9.6352 -7.4560 25 1 0.3638 9.9610 -7.5279 26 1 1.8014 11.7233 -6.6863 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2134 2.3221 0.0002 31 1 1.3360 4.5095 0.0019 32 1 4.0182 0.3799 0.0005 33 1 6.1903 0.9357 0.6962 34 1 7.3420 2.2586 0.9997 35 1 5.8699 2.1154 1.9901 36 1 5.5770 3.3447 -2.1010 37 1 7.1703 2.9787 -1.3971 38 1 6.0172 1.6622 -1.7216 39 1 6.4047 4.8691 -0.0774 40 1 5.7199 4.4226 1.5211 41 1 4.2871 4.7357 -2.0521 42 1 3.3244 7.2443 -0.8402 43 1 2.2684 5.9516 -1.4584 44 1 3.2691 6.2105 -3.7118 45 1 4.3254 7.5031 -3.0943 46 1 2.3289 8.8418 -2.4838 47 1 1.2732 7.5485 -3.1014 48 1 -0.1419 10.6224 -4.5543 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353331325.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:49 Heat of formation + Delta-G solvation = -51.555857 kcal Electronic energy + Delta-G solvation = -24830.385849 eV Core-core repulsion = 21462.601212 eV Total energy + Delta-G solvation = -3367.784636 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.89179 -40.10385 -37.36356 -36.59037 -35.37562 -33.49047 -31.61491 -30.94240 -29.41483 -28.16349 -27.95005 -27.53671 -24.60073 -24.03314 -23.53550 -22.06352 -21.46255 -20.33891 -18.51483 -18.31486 -17.43924 -17.11271 -16.72802 -16.59725 -16.17627 -16.04586 -15.71856 -15.04171 -14.74665 -14.63125 -14.51922 -14.19416 -14.10683 -13.81248 -13.60723 -13.48824 -13.33766 -12.98287 -12.88365 -12.77931 -12.58052 -12.47697 -12.43646 -12.14396 -12.11636 -12.05454 -11.70911 -11.55991 -11.41151 -11.39362 -11.29192 -10.99253 -10.56435 -9.82768 -9.55560 -8.98732 -8.20746 -6.31645 0.30750 0.35952 1.39503 1.39763 1.53545 2.27308 2.40581 2.65863 3.12352 3.26182 3.45780 3.58498 3.84872 3.96848 4.09214 4.15774 4.21318 4.26448 4.34211 4.36869 4.38329 4.42286 4.51681 4.60049 4.67963 4.70496 4.72538 4.86554 4.91831 4.95023 5.00631 5.06915 5.07390 5.14064 5.19767 5.21403 5.26202 5.30640 5.35305 5.42137 5.49409 5.52691 5.68435 5.72564 5.74834 5.85293 6.08423 6.27131 6.38816 6.44935 6.85270 7.37579 8.91371 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.014605 B = 0.003148 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.711509 B = 8892.771817 C =10132.743488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.331 6.331 3 C 0.122 3.878 4 C -0.215 4.215 5 C -0.073 4.073 6 C -0.178 4.178 7 C -0.037 4.037 8 C -0.149 4.149 9 C -0.022 4.022 10 C -0.134 4.134 11 C -0.133 4.133 12 C -0.096 4.096 13 C 0.126 3.874 14 H 0.078 0.922 15 N -0.666 5.666 16 C 0.071 3.929 17 C -0.091 4.091 18 C 0.027 3.973 19 C -0.542 4.542 20 H 0.059 0.941 21 C -0.002 4.002 22 N -0.934 5.934 23 Si 0.966 3.034 24 H -0.262 1.262 25 H -0.278 1.278 26 H -0.277 1.277 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.123 0.877 30 H 0.142 0.858 31 H 0.117 0.883 32 H 0.137 0.863 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.047 0.953 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.339 0.661 42 H 0.064 0.936 43 H 0.019 0.981 44 H 0.044 0.956 45 H 0.055 0.945 46 H -0.008 1.008 47 H -0.012 1.012 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.310 -21.233 12.612 25.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.245 6.245 3 C 0.076 3.924 4 C -0.233 4.233 5 C -0.092 4.092 6 C -0.179 4.179 7 C -0.038 4.038 8 C -0.168 4.168 9 C -0.023 4.023 10 C -0.191 4.191 11 C -0.191 4.191 12 C -0.134 4.134 13 C 0.016 3.984 14 H 0.096 0.904 15 N -0.296 5.296 16 C -0.058 4.058 17 C -0.129 4.129 18 C -0.011 4.011 19 C -0.580 4.580 20 H 0.077 0.923 21 C -0.199 4.199 22 N -0.574 5.574 23 Si 0.790 3.210 24 H -0.186 1.186 25 H -0.203 1.203 26 H -0.202 1.202 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.141 0.859 30 H 0.160 0.840 31 H 0.135 0.865 32 H 0.155 0.845 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.159 0.841 42 H 0.083 0.917 43 H 0.037 0.963 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.011 0.989 47 H 0.007 0.993 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.728 -20.824 12.793 25.632 hybrid contribution -1.825 0.269 -0.929 2.066 sum 5.903 -20.555 11.863 24.456 Atomic orbital electron populations 1.23321 0.76578 1.05614 1.02002 1.86023 1.23277 1.26494 1.88722 1.18971 0.92442 0.84441 0.96519 1.21288 1.00837 0.91810 1.09409 1.20634 0.93825 0.97467 0.97299 1.21382 0.93783 0.97641 1.05143 1.20502 0.96497 0.91572 0.95197 1.19927 0.91188 0.98155 1.07506 1.20210 0.89078 0.95733 0.97230 1.21817 1.00416 0.99054 0.97805 1.21841 1.01371 1.01686 0.94178 1.22535 0.95851 0.93473 1.01547 1.21073 0.94150 0.92054 0.91086 0.90421 1.60895 1.47075 1.18183 1.03485 1.21883 0.91906 0.94689 0.97329 1.21360 0.98958 0.97739 0.94857 1.18951 0.93334 0.93455 0.95314 1.21727 1.13033 1.22869 1.00388 0.92314 1.25993 0.94851 0.96996 1.02075 1.70104 1.17133 1.32026 1.38133 0.85390 0.78355 0.78151 0.79108 1.18610 1.20330 1.20238 0.91840 0.92381 0.85926 0.83993 0.86537 0.84503 0.92101 0.90728 0.92573 0.93367 0.90577 0.92305 0.88930 0.89428 0.84147 0.91739 0.96267 0.93686 0.92632 0.98936 0.99315 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -7.13 10.50 -92.50 -0.97 -8.10 16 3 C 0.12 2.90 6.68 22.48 0.15 3.05 16 4 C -0.21 -5.16 9.04 22.34 0.20 -4.95 16 5 C -0.07 -1.95 9.65 22.29 0.21 -1.74 16 6 C -0.18 -4.55 5.44 -19.57 -0.11 -4.66 16 7 C -0.04 -0.84 4.92 -19.60 -0.10 -0.94 16 8 C -0.15 -3.42 9.69 22.40 0.22 -3.20 16 9 C -0.02 -0.41 0.89 -52.17 -0.05 -0.46 16 10 C -0.13 -1.92 8.31 71.98 0.60 -1.32 16 11 C -0.13 -2.42 8.48 71.98 0.61 -1.81 16 12 C -0.10 -1.89 5.82 31.59 0.18 -1.70 16 13 C 0.13 3.16 3.17 44.84 0.14 3.30 16 14 H 0.08 2.02 7.84 -2.38 -0.02 2.00 16 15 N -0.67 -19.42 6.20 -492.00 -3.05 -22.47 16 16 C 0.07 2.52 5.52 86.30 0.48 3.00 16 17 C -0.09 -3.90 5.41 30.59 0.17 -3.73 16 18 C 0.03 1.47 4.97 29.85 0.15 1.62 16 19 C -0.54 -31.70 9.11 25.60 0.23 -31.46 16 20 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 21 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 22 N -0.93 -57.69 13.29 21.45 0.28 -57.40 16 23 Si 0.97 45.00 29.54 68.60 2.03 47.03 16 24 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 25 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 26 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 27 H 0.06 0.77 7.66 -2.39 -0.02 0.76 16 28 H 0.06 0.79 7.67 -2.39 -0.02 0.77 16 29 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.14 2.83 6.31 -2.91 -0.02 2.81 16 31 H 0.12 3.14 7.59 -2.91 -0.02 3.12 16 32 H 0.14 2.72 7.86 -2.91 -0.02 2.70 16 33 H 0.06 0.82 7.91 -2.39 -0.02 0.80 16 34 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 36 H 0.05 1.03 6.19 -2.39 -0.01 1.02 16 37 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.09 1.81 7.85 -2.39 -0.02 1.80 16 40 H 0.09 1.48 7.91 -2.39 -0.02 1.46 16 41 H 0.34 9.91 6.62 -89.69 -0.59 9.32 16 42 H 0.06 2.32 8.07 -2.39 -0.02 2.30 16 43 H 0.02 0.70 7.26 -2.39 -0.02 0.68 16 44 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 46 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 47 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 48 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -66.98 379.27 3.29 -63.69 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.33 Total: 20.52 kcal Atomic # 6 Polarization: -47.93 SS G_CDS: 4.67 Total: -43.26 kcal Atomic # 7 Polarization: -77.11 SS G_CDS: -2.76 Total: -79.87 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: -0.97 Total: -8.10 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -66.98 3.29 -63.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353331325.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.130 kcal (2) G-P(sol) polarization free energy of solvation -66.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds