Wall clock time and date at job start Tue Mar 31 2020 09:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35894 * 117.00537 * 2 1 4 4 C 1.38603 * 119.81267 * 359.97438 * 3 2 1 5 5 C 1.38183 * 119.82595 * 179.97438 * 4 3 2 6 6 C 1.37874 * 120.00759 * 0.11422 * 5 4 3 7 7 C 1.39625 * 120.54210 * 0.05792 * 6 5 4 8 8 C 1.38318 * 119.42051 * 359.75358 * 7 6 5 9 9 C 1.50792 * 122.03684 * 180.48947 * 8 7 6 10 10 C 1.53047 * 109.66514 * 344.39867 * 9 8 7 11 11 C 1.53386 * 107.92339 * 47.25858 * 10 9 8 12 12 N 1.39414 * 117.63583 * 179.54080 * 7 6 5 13 13 C 1.46893 * 110.99700 * 285.57977 * 12 7 6 14 14 C 1.53003 * 109.47620 * 72.32918 * 13 12 7 15 15 C 1.53000 * 109.46698 * 274.00163 * 14 13 12 16 16 C 1.52998 * 109.46876 * 33.99317 * 14 13 12 17 17 C 1.52998 * 109.47455 * 154.00013 * 14 13 12 18 18 C 1.50699 * 109.46836 * 180.02562 * 17 14 13 19 19 H 1.08001 * 119.99952 * 359.97438 * 18 17 14 20 20 C 1.37882 * 119.99849 * 180.02562 * 18 17 14 21 21 N 1.31513 * 119.99735 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99894 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47123 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47031 * 120.00335 * 22 20 18 25 25 H 1.48505 * 109.47153 * 239.99996 * 22 20 18 26 26 H 1.08997 * 109.47466 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46435 * 300.00136 * 1 2 3 28 28 H 1.08998 * 109.46797 * 59.99386 * 1 2 3 29 29 H 1.08000 * 120.08690 * 359.64702 * 4 3 2 30 30 H 1.07992 * 119.99570 * 180.09860 * 5 4 3 31 31 H 1.08007 * 119.72769 * 180.02562 * 6 5 4 32 32 H 1.09000 * 109.43599 * 104.45422 * 9 8 7 33 33 H 1.08995 * 109.44114 * 224.33575 * 9 8 7 34 34 H 1.08998 * 109.76951 * 166.86579 * 10 9 8 35 35 H 1.08997 * 109.76800 * 287.60346 * 10 9 8 36 36 H 1.09007 * 109.60397 * 51.52767 * 11 10 9 37 37 H 1.08998 * 109.60387 * 171.85662 * 11 10 9 38 38 H 1.09006 * 109.46719 * 192.32464 * 13 12 7 39 39 H 1.08997 * 109.47574 * 312.31794 * 13 12 7 40 40 H 1.09009 * 109.47284 * 20.03533 * 15 14 13 41 41 H 1.08991 * 109.47585 * 140.03930 * 15 14 13 42 42 H 1.09006 * 109.46936 * 260.03786 * 15 14 13 43 43 H 1.09006 * 109.46662 * 89.38644 * 16 14 13 44 44 H 1.08994 * 109.47034 * 209.38147 * 16 14 13 45 45 H 1.09001 * 109.47894 * 329.38806 * 16 14 13 46 46 H 1.08995 * 109.47033 * 299.99667 * 17 14 13 47 47 H 1.08994 * 109.47207 * 59.99704 * 17 14 13 48 48 H 0.96996 * 119.99914 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2875 2.3708 -0.0005 5 6 1.9147 3.6021 0.0000 6 6 3.2915 3.6746 -0.0013 7 6 4.0634 2.5111 -0.0044 8 6 3.4349 1.2789 -0.0010 9 6 4.2103 -0.0144 0.0069 10 6 5.6668 0.2559 -0.3775 11 6 6.1562 1.4566 0.4419 12 7 5.4500 2.6549 -0.0155 13 6 5.9253 3.0723 -1.3412 14 6 5.5445 4.5344 -1.5827 15 6 4.1262 4.6045 -2.1523 16 6 5.6013 5.3012 -0.2600 17 6 6.5250 5.1593 -2.5771 18 6 6.1502 6.5996 -2.8143 19 1 5.2976 7.0263 -2.3069 20 6 6.8950 7.3722 -3.6800 21 7 7.9329 6.8523 -4.2983 22 14 6.4300 9.1572 -3.9746 23 1 5.2319 9.4965 -3.1656 24 1 7.5604 10.0350 -3.5784 25 1 6.1278 9.3588 -5.4145 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 0.2091 2.3125 -0.0067 30 1 1.3263 4.5077 0.0012 31 1 3.7770 4.6394 -0.0005 32 1 4.1737 -0.4531 1.0040 33 1 3.7684 -0.7066 -0.7097 34 1 6.2764 -0.6186 -0.1504 35 1 5.7310 0.4839 -1.4415 36 1 5.9458 1.2887 1.4982 37 1 7.2292 1.5842 0.2986 38 1 7.0092 2.9667 -1.3884 39 1 5.4657 2.4461 -2.1058 40 1 3.5977 3.6783 -1.9265 41 1 3.5956 5.4442 -1.7037 42 1 4.1749 4.7409 -3.2327 43 1 6.6045 5.7022 -0.1153 44 1 4.8826 6.1203 -0.2837 45 1 5.3574 4.6275 0.5615 46 1 7.5353 5.1094 -2.1713 47 1 6.4845 4.6130 -3.5194 48 1 8.4567 7.3957 -4.9075 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354042711.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:22 Heat of formation + Delta-G solvation = 7.546502 kcal Electronic energy + Delta-G solvation = -26434.157165 eV Core-core repulsion = 23068.935399 eV Total energy + Delta-G solvation = -3365.221766 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.09176 -39.12267 -36.48969 -36.13099 -33.13619 -31.86900 -30.40068 -29.48120 -27.46410 -27.02350 -26.39932 -25.95312 -24.05829 -23.06386 -22.79497 -21.33144 -19.46174 -18.18831 -17.42499 -16.52093 -16.11659 -15.83935 -15.56708 -15.41001 -14.82856 -14.44610 -14.23202 -14.11178 -13.61890 -13.45484 -13.10103 -12.86919 -12.78998 -12.57613 -12.46636 -12.20545 -11.94609 -11.82656 -11.26364 -11.20671 -11.06075 -10.94198 -10.78030 -10.62691 -10.51081 -10.43722 -10.27209 -10.13373 -10.03803 -9.67313 -9.05350 -8.93655 -8.72766 -8.29860 -7.97612 -7.46945 -5.94155 -3.93861 1.48396 1.67530 3.25285 3.33880 3.41795 3.45435 3.85199 4.11644 4.51291 4.78240 4.84458 4.92434 4.99339 5.02341 5.17055 5.24682 5.32575 5.33794 5.42365 5.58393 5.59151 5.60999 5.70871 5.76984 5.81224 5.86537 5.93859 6.03478 6.15491 6.17357 6.24542 6.38448 6.44804 6.48310 6.59424 6.66962 6.71244 6.77064 6.84625 6.96571 7.15445 7.28917 7.31147 7.41933 7.43226 7.69160 7.72200 7.89293 8.05464 8.51191 9.12098 9.69211 11.17592 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.020920 B = 0.004100 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.082961 B = 6826.894064 C = 7632.648665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.319 6.319 3 C 0.124 3.876 4 C -0.223 4.223 5 C -0.090 4.090 6 C -0.144 4.144 7 C 0.147 3.853 8 C -0.151 4.151 9 C -0.063 4.063 10 C -0.159 4.159 11 C 0.054 3.946 12 N -0.491 5.491 13 C 0.070 3.930 14 C -0.059 4.059 15 C -0.137 4.137 16 C -0.135 4.135 17 C 0.036 3.964 18 C -0.502 4.502 19 H 0.058 0.942 20 C 0.054 3.946 21 N -0.898 5.898 22 Si 0.886 3.114 23 H -0.273 1.273 24 H -0.286 1.286 25 H -0.286 1.286 26 H 0.094 0.906 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.161 0.839 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.038 0.962 40 H 0.047 0.953 41 H 0.048 0.952 42 H 0.052 0.948 43 H 0.050 0.950 44 H 0.043 0.957 45 H 0.070 0.930 46 H 0.015 0.985 47 H 0.012 0.988 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.392 -14.006 10.246 20.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.233 6.233 3 C 0.079 3.921 4 C -0.242 4.242 5 C -0.109 4.109 6 C -0.163 4.163 7 C 0.050 3.950 8 C -0.155 4.155 9 C -0.100 4.100 10 C -0.198 4.198 11 C -0.073 4.073 12 N -0.206 5.206 13 C -0.054 4.054 14 C -0.060 4.060 15 C -0.193 4.193 16 C -0.192 4.192 17 C -0.001 4.001 18 C -0.541 4.541 19 H 0.076 0.924 20 C -0.146 4.146 21 N -0.538 5.538 22 Si 0.715 3.285 23 H -0.198 1.198 24 H -0.212 1.212 25 H -0.212 1.212 26 H 0.113 0.887 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.178 0.822 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.089 0.911 46 H 0.033 0.967 47 H 0.030 0.970 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.990 -13.787 10.432 20.486 hybrid contribution -0.689 0.600 -0.890 1.275 sum -11.678 -13.187 9.542 20.034 Atomic orbital electron populations 1.22976 0.78977 1.03349 1.01224 1.86010 1.20810 1.27377 1.89100 1.18651 0.91315 0.83898 0.98218 1.21035 0.99351 0.92516 1.11293 1.20740 0.94480 0.96747 0.98890 1.22038 0.93394 1.00098 1.00792 1.18227 0.88797 0.91195 0.96783 1.19180 0.90668 0.95389 1.10261 1.20234 0.93892 0.94066 1.01778 1.22225 0.96506 0.99802 1.01224 1.22257 0.98652 0.87189 0.99210 1.58797 1.01707 1.32443 1.27654 1.22461 0.99867 0.97559 0.85514 1.20687 0.96688 0.91419 0.97157 1.22465 0.95907 0.99687 1.01271 1.22097 1.01429 0.98683 0.96984 1.19264 0.93059 0.95166 0.92634 1.21233 1.12488 0.95808 1.24565 0.92426 1.25008 0.95238 0.98156 0.96212 1.69970 1.18247 1.36149 1.29475 0.86621 0.78373 0.85683 0.77838 1.19786 1.21189 1.21247 0.88711 0.92905 0.92856 0.86165 0.85971 0.82234 0.91224 0.90876 0.90947 0.91297 0.90510 0.89860 0.90354 0.94381 0.93457 0.93281 0.92884 0.93134 0.93824 0.91118 0.96663 0.96962 0.93262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -3.99 9.62 -19.41 -0.19 -4.17 16 3 C 0.12 1.74 6.65 -39.15 -0.26 1.48 16 4 C -0.22 -2.89 9.03 -39.47 -0.36 -3.25 16 5 C -0.09 -1.23 9.91 -39.73 -0.39 -1.62 16 6 C -0.14 -2.22 5.09 -39.20 -0.20 -2.42 16 7 C 0.15 2.28 4.38 -83.86 -0.37 1.91 16 8 C -0.15 -2.22 5.75 -104.25 -0.60 -2.82 16 9 C -0.06 -0.79 5.38 -27.81 -0.15 -0.94 16 10 C -0.16 -1.88 6.03 -26.51 -0.16 -2.04 16 11 C 0.05 0.69 5.80 -3.88 -0.02 0.67 16 12 N -0.49 -7.53 2.76 -171.30 -0.47 -8.01 16 13 C 0.07 1.22 3.88 -3.83 -0.01 1.21 16 14 C -0.06 -1.17 0.53 -154.51 -0.08 -1.25 16 15 C -0.14 -2.62 6.48 37.16 0.24 -2.38 16 16 C -0.13 -2.56 6.56 37.16 0.24 -2.32 16 17 C 0.04 0.90 3.51 -27.88 -0.10 0.80 16 18 C -0.50 -13.70 7.86 -34.44 -0.27 -13.97 16 19 H 0.06 1.54 6.85 -52.49 -0.36 1.18 16 20 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 21 N -0.90 -26.81 13.29 55.43 0.74 -26.08 16 22 Si 0.89 21.66 29.54 -169.99 -5.02 16.63 16 23 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.39 7.66 -51.93 -0.40 0.00 16 28 H 0.05 0.42 7.64 -51.93 -0.40 0.02 16 29 H 0.12 1.26 6.27 -52.49 -0.33 0.94 16 30 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.16 2.59 2.73 -52.48 -0.14 2.45 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.92 7.87 -51.93 -0.41 0.51 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.90 6.85 -51.93 -0.36 0.55 16 36 H 0.08 0.92 8.11 -51.93 -0.42 0.50 16 37 H 0.08 0.99 7.78 -51.93 -0.40 0.59 16 38 H 0.08 1.36 7.45 -51.93 -0.39 0.98 16 39 H 0.04 0.67 6.88 -51.93 -0.36 0.32 16 40 H 0.05 0.85 4.52 -51.92 -0.23 0.61 16 41 H 0.05 0.91 6.49 -51.93 -0.34 0.57 16 42 H 0.05 1.12 7.59 -51.93 -0.39 0.72 16 43 H 0.05 1.03 7.82 -51.93 -0.41 0.63 16 44 H 0.04 0.82 6.57 -51.93 -0.34 0.48 16 45 H 0.07 1.22 4.78 -51.93 -0.25 0.98 16 46 H 0.02 0.41 8.09 -51.93 -0.42 -0.01 16 47 H 0.01 0.33 8.13 -51.93 -0.42 -0.10 16 48 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 349.47 15.07 5.27 5.27 Total: -1.00 -30.28 349.47 -8.86 -39.14 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -7.59 Total: 1.47 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: -1.60 Total: -24.26 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.26 Total: -34.08 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -0.19 Total: -4.17 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.28 -8.86 -39.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354042711.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.687 kcal (2) G-P(sol) polarization free energy of solvation -30.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds