Wall clock time and date at job start Tue Mar 31 2020 09:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35894 * 117.00537 * 2 1 4 4 C 1.38603 * 119.81267 * 359.97438 * 3 2 1 5 5 C 1.38183 * 119.82595 * 179.97438 * 4 3 2 6 6 C 1.37874 * 120.00759 * 0.11422 * 5 4 3 7 7 C 1.39625 * 120.54210 * 0.05792 * 6 5 4 8 8 C 1.38318 * 119.42051 * 359.75358 * 7 6 5 9 9 C 1.50792 * 122.03684 * 180.48947 * 8 7 6 10 10 C 1.53047 * 109.66514 * 344.39867 * 9 8 7 11 11 C 1.53386 * 107.92339 * 47.25858 * 10 9 8 12 12 N 1.39414 * 117.63583 * 179.54080 * 7 6 5 13 13 C 1.46893 * 110.99700 * 285.57977 * 12 7 6 14 14 C 1.53003 * 109.47620 * 72.32918 * 13 12 7 15 15 C 1.53000 * 109.46698 * 274.00163 * 14 13 12 16 16 C 1.52998 * 109.46876 * 33.99317 * 14 13 12 17 17 C 1.52998 * 109.47455 * 154.00013 * 14 13 12 18 18 C 1.50699 * 109.46836 * 180.02562 * 17 14 13 19 19 H 1.08001 * 119.99952 * 359.97438 * 18 17 14 20 20 C 1.37882 * 119.99849 * 180.02562 * 18 17 14 21 21 N 1.31513 * 119.99735 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99894 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47123 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47031 * 120.00335 * 22 20 18 25 25 H 1.48505 * 109.47153 * 239.99996 * 22 20 18 26 26 H 1.08997 * 109.47466 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46435 * 300.00136 * 1 2 3 28 28 H 1.08998 * 109.46797 * 59.99386 * 1 2 3 29 29 H 1.08000 * 120.08690 * 359.64702 * 4 3 2 30 30 H 1.07992 * 119.99570 * 180.09860 * 5 4 3 31 31 H 1.08007 * 119.72769 * 180.02562 * 6 5 4 32 32 H 1.09000 * 109.43599 * 104.45422 * 9 8 7 33 33 H 1.08995 * 109.44114 * 224.33575 * 9 8 7 34 34 H 1.08998 * 109.76951 * 166.86579 * 10 9 8 35 35 H 1.08997 * 109.76800 * 287.60346 * 10 9 8 36 36 H 1.09007 * 109.60397 * 51.52767 * 11 10 9 37 37 H 1.08998 * 109.60387 * 171.85662 * 11 10 9 38 38 H 1.09006 * 109.46719 * 192.32464 * 13 12 7 39 39 H 1.08997 * 109.47574 * 312.31794 * 13 12 7 40 40 H 1.09009 * 109.47284 * 20.03533 * 15 14 13 41 41 H 1.08991 * 109.47585 * 140.03930 * 15 14 13 42 42 H 1.09006 * 109.46936 * 260.03786 * 15 14 13 43 43 H 1.09006 * 109.46662 * 89.38644 * 16 14 13 44 44 H 1.08994 * 109.47034 * 209.38147 * 16 14 13 45 45 H 1.09001 * 109.47894 * 329.38806 * 16 14 13 46 46 H 1.08995 * 109.47033 * 299.99667 * 17 14 13 47 47 H 1.08994 * 109.47207 * 59.99704 * 17 14 13 48 48 H 0.96996 * 119.99914 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2875 2.3708 -0.0005 5 6 1.9147 3.6021 0.0000 6 6 3.2915 3.6746 -0.0013 7 6 4.0634 2.5111 -0.0044 8 6 3.4349 1.2789 -0.0010 9 6 4.2103 -0.0144 0.0069 10 6 5.6668 0.2559 -0.3775 11 6 6.1562 1.4566 0.4419 12 7 5.4500 2.6549 -0.0155 13 6 5.9253 3.0723 -1.3412 14 6 5.5445 4.5344 -1.5827 15 6 4.1262 4.6045 -2.1523 16 6 5.6013 5.3012 -0.2600 17 6 6.5250 5.1593 -2.5771 18 6 6.1502 6.5996 -2.8143 19 1 5.2976 7.0263 -2.3069 20 6 6.8950 7.3722 -3.6800 21 7 7.9329 6.8523 -4.2983 22 14 6.4300 9.1572 -3.9746 23 1 5.2319 9.4965 -3.1656 24 1 7.5604 10.0350 -3.5784 25 1 6.1278 9.3588 -5.4145 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 0.2091 2.3125 -0.0067 30 1 1.3263 4.5077 0.0012 31 1 3.7770 4.6394 -0.0005 32 1 4.1737 -0.4531 1.0040 33 1 3.7684 -0.7066 -0.7097 34 1 6.2764 -0.6186 -0.1504 35 1 5.7310 0.4839 -1.4415 36 1 5.9458 1.2887 1.4982 37 1 7.2292 1.5842 0.2986 38 1 7.0092 2.9667 -1.3884 39 1 5.4657 2.4461 -2.1058 40 1 3.5977 3.6783 -1.9265 41 1 3.5956 5.4442 -1.7037 42 1 4.1749 4.7409 -3.2327 43 1 6.6045 5.7022 -0.1153 44 1 4.8826 6.1203 -0.2837 45 1 5.3574 4.6275 0.5615 46 1 7.5353 5.1094 -2.1713 47 1 6.4845 4.6130 -3.5194 48 1 8.4567 7.3957 -4.9075 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354042711.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:21 Heat of formation + Delta-G solvation = -7.948067 kcal Electronic energy + Delta-G solvation = -26434.829060 eV Core-core repulsion = 23068.935399 eV Total energy + Delta-G solvation = -3365.893661 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.22662 -40.15551 -37.95069 -37.16119 -34.84993 -33.47562 -31.42323 -30.59954 -29.11126 -28.08048 -27.96592 -27.26852 -25.48273 -24.51931 -23.99302 -22.49326 -20.60802 -19.55513 -18.55632 -18.24717 -17.56359 -16.81111 -16.72402 -16.48722 -16.36100 -15.89186 -15.48214 -15.14388 -15.04353 -14.72334 -14.54544 -14.21873 -14.01458 -13.96149 -13.70718 -13.54028 -13.09705 -12.92382 -12.84851 -12.68713 -12.42146 -12.30667 -12.21485 -12.14867 -12.02578 -11.84953 -11.68252 -11.54658 -11.39459 -11.27733 -10.90319 -10.70447 -10.49378 -10.00081 -9.05545 -8.61504 -8.12453 -6.19040 0.40820 0.59602 1.40540 1.41666 1.53741 2.38756 2.45013 2.75572 3.01157 3.21839 3.79933 3.85868 3.95876 4.05364 4.15453 4.18751 4.27777 4.38663 4.39095 4.42785 4.43457 4.57361 4.61644 4.67604 4.70697 4.75021 4.78718 4.81715 4.88870 4.94159 4.99797 5.09223 5.19681 5.21078 5.26519 5.33427 5.42214 5.45921 5.46907 5.56205 5.59635 5.62593 5.72618 5.74491 5.91282 5.94312 6.12763 6.38037 6.43883 6.60724 6.95982 7.48338 9.00072 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.020920 B = 0.004100 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.082961 B = 6826.894064 C = 7632.648665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.331 6.331 3 C 0.119 3.881 4 C -0.220 4.220 5 C -0.091 4.091 6 C -0.164 4.164 7 C 0.130 3.870 8 C -0.165 4.165 9 C -0.059 4.059 10 C -0.152 4.152 11 C 0.051 3.949 12 N -0.495 5.495 13 C 0.083 3.917 14 C -0.053 4.053 15 C -0.123 4.123 16 C -0.122 4.122 17 C 0.044 3.956 18 C -0.509 4.509 19 H 0.063 0.937 20 C -0.004 4.004 21 N -0.938 5.938 22 Si 0.954 3.046 23 H -0.261 1.261 24 H -0.282 1.282 25 H -0.283 1.283 26 H 0.118 0.882 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.147 0.853 30 H 0.141 0.859 31 H 0.148 0.852 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.052 0.948 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.031 0.969 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.025 0.975 43 H 0.028 0.972 44 H 0.042 0.958 45 H 0.091 0.909 46 H -0.012 1.012 47 H -0.018 1.018 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.547 -14.573 11.521 22.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.245 6.245 3 C 0.073 3.927 4 C -0.239 4.239 5 C -0.110 4.110 6 C -0.183 4.183 7 C 0.034 3.966 8 C -0.169 4.169 9 C -0.096 4.096 10 C -0.191 4.191 11 C -0.075 4.075 12 N -0.211 5.211 13 C -0.042 4.042 14 C -0.054 4.054 15 C -0.180 4.180 16 C -0.179 4.179 17 C 0.007 3.993 18 C -0.548 4.548 19 H 0.081 0.919 20 C -0.200 4.200 21 N -0.579 5.579 22 Si 0.780 3.220 23 H -0.185 1.185 24 H -0.208 1.208 25 H -0.209 1.209 26 H 0.136 0.864 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.164 0.836 30 H 0.159 0.841 31 H 0.165 0.835 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.049 0.951 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.045 0.955 43 H 0.047 0.953 44 H 0.061 0.939 45 H 0.109 0.891 46 H 0.006 0.994 47 H 0.000 1.000 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.169 -14.367 11.725 22.744 hybrid contribution -0.108 0.669 -1.261 1.432 sum -13.277 -13.698 10.465 21.758 Atomic orbital electron populations 1.23290 0.76818 1.05274 1.02025 1.86000 1.23035 1.26683 1.88801 1.18822 0.91385 0.84823 0.97636 1.21338 1.00735 0.91865 1.09998 1.20997 0.93990 0.97971 0.97997 1.22020 0.94346 0.99545 1.02438 1.18311 0.88621 0.91759 0.97959 1.19439 0.91560 0.95777 1.10100 1.20241 0.93850 0.93210 1.02309 1.22172 0.96653 1.00324 0.99926 1.22373 0.98766 0.86535 0.99872 1.58709 1.02258 1.34177 1.25908 1.22146 0.99404 0.95702 0.86989 1.20518 0.95695 0.92980 0.96200 1.22353 0.95551 1.00830 0.99263 1.21999 1.00026 0.98818 0.97045 1.19127 0.93060 0.94651 0.92473 1.21582 1.12274 0.96795 1.24103 0.91920 1.25889 0.95228 1.02748 0.96155 1.70107 1.19525 1.37914 1.30379 0.85550 0.78433 0.80210 0.77804 1.18473 1.20813 1.20931 0.86415 0.91786 0.92252 0.83560 0.84072 0.83463 0.90169 0.90963 0.88485 0.92965 0.89325 0.89283 0.90998 0.95073 0.91851 0.92669 0.95540 0.95268 0.93872 0.89113 0.99407 0.99970 0.93206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.33 -7.44 9.62 -92.35 -0.89 -8.33 16 3 C 0.12 3.06 6.65 22.55 0.15 3.21 16 4 C -0.22 -5.13 9.03 22.34 0.20 -4.93 16 5 C -0.09 -2.30 9.91 22.17 0.22 -2.08 16 6 C -0.16 -4.87 5.09 22.52 0.11 -4.75 16 7 C 0.13 3.90 4.38 38.29 0.17 4.07 16 8 C -0.17 -4.59 5.75 -19.62 -0.11 -4.70 16 9 C -0.06 -1.38 5.38 29.89 0.16 -1.22 16 10 C -0.15 -3.38 6.03 30.74 0.19 -3.20 16 11 C 0.05 1.25 5.80 86.52 0.50 1.75 16 12 N -0.49 -14.95 2.76 -695.87 -1.92 -16.87 16 13 C 0.08 2.93 3.88 86.31 0.33 3.27 16 14 C -0.05 -2.17 0.53 -52.18 -0.03 -2.20 16 15 C -0.12 -4.77 6.48 71.98 0.47 -4.30 16 16 C -0.12 -4.66 6.56 71.98 0.47 -4.19 16 17 C 0.04 2.32 3.51 29.85 0.10 2.42 16 18 C -0.51 -28.39 7.86 25.60 0.20 -28.19 16 19 H 0.06 3.36 6.85 -2.91 -0.02 3.34 16 20 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 21 N -0.94 -57.54 13.29 21.45 0.28 -57.26 16 22 Si 0.95 44.78 29.54 68.60 2.03 46.80 16 23 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 24 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 25 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 26 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.06 0.74 7.66 -2.39 -0.02 0.72 16 28 H 0.06 0.74 7.64 -2.39 -0.02 0.73 16 29 H 0.15 2.55 6.27 -2.91 -0.02 2.53 16 30 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 31 H 0.15 4.66 2.73 -2.91 -0.01 4.65 16 32 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.07 1.70 7.87 -2.39 -0.02 1.68 16 34 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.05 1.34 6.85 -2.39 -0.02 1.33 16 36 H 0.09 1.96 8.11 -2.38 -0.02 1.94 16 37 H 0.09 2.04 7.78 -2.39 -0.02 2.02 16 38 H 0.07 2.60 7.45 -2.38 -0.02 2.59 16 39 H 0.03 1.13 6.88 -2.39 -0.02 1.12 16 40 H 0.06 2.25 4.52 -2.38 -0.01 2.24 16 41 H 0.05 2.03 6.49 -2.39 -0.02 2.01 16 42 H 0.03 1.13 7.59 -2.38 -0.02 1.11 16 43 H 0.03 1.20 7.82 -2.38 -0.02 1.19 16 44 H 0.04 1.62 6.57 -2.39 -0.02 1.60 16 45 H 0.09 3.11 4.78 -2.39 -0.01 3.10 16 46 H -0.01 -0.71 8.09 -2.39 -0.02 -0.73 16 47 H -0.02 -1.04 8.13 -2.39 -0.02 -1.06 16 48 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -66.17 349.47 5.17 -61.01 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.95 Total: 18.04 kcal Atomic # 6 Polarization: -48.11 SS G_CDS: 4.71 Total: -43.39 kcal Atomic # 7 Polarization: -72.49 SS G_CDS: -1.64 Total: -74.13 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -0.89 Total: -8.33 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -66.17 5.17 -61.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354042711.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.061 kcal (2) G-P(sol) polarization free energy of solvation -66.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds