Wall clock time and date at job start Tue Mar 31 2020 08:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47484 * 2 1 4 4 C 1.53000 * 109.46882 * 239.99818 * 2 1 3 5 5 C 1.53001 * 109.46965 * 120.00456 * 2 1 3 6 6 C 1.52995 * 109.47356 * 59.99882 * 5 2 1 7 7 N 1.46506 * 109.47121 * 179.97438 * 6 5 2 8 8 C 1.34769 * 119.99929 * 179.97438 * 7 6 5 9 9 O 1.21284 * 120.00091 * 0.02562 * 8 7 6 10 10 C 1.50703 * 120.00156 * 179.97438 * 8 7 6 11 11 C 1.52995 * 109.47348 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.47385 * 53.81101 * 11 10 8 13 13 C 1.50707 * 109.46800 * 293.80633 * 11 10 8 14 14 H 1.07996 * 119.99939 * 324.79144 * 13 11 10 15 15 C 1.37876 * 119.99516 * 144.79724 * 13 11 10 16 16 N 1.31517 * 119.99498 * 181.40280 * 15 13 11 17 17 Si 1.86799 * 120.00347 * 1.40222 * 15 13 11 18 18 H 1.48496 * 109.47059 * 267.09616 * 17 15 13 19 19 H 1.48498 * 109.46945 * 27.10055 * 17 15 13 20 20 H 1.48502 * 109.46861 * 147.09689 * 17 15 13 21 21 C 1.50699 * 109.46966 * 173.80920 * 11 10 8 22 22 C 1.38237 * 120.00135 * 66.64777 * 21 11 10 23 23 C 1.38237 * 120.00124 * 179.80917 * 22 21 11 24 24 C 1.38241 * 119.99834 * 0.39586 * 23 22 21 25 25 C 1.38239 * 119.99727 * 359.85702 * 24 23 22 26 26 C 1.38229 * 120.00171 * 359.95425 * 25 24 23 27 27 H 1.09004 * 109.46751 * 299.99834 * 1 2 3 28 28 H 1.08999 * 109.47135 * 59.99471 * 1 2 3 29 29 H 1.08996 * 109.47310 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47167 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.46957 * 300.00451 * 3 2 1 32 32 H 1.08999 * 109.46786 * 59.99874 * 3 2 1 33 33 H 1.09002 * 109.47815 * 300.00319 * 4 2 1 34 34 H 1.09005 * 109.47284 * 60.00242 * 4 2 1 35 35 H 1.09004 * 109.47492 * 179.97438 * 4 2 1 36 36 H 1.09004 * 109.46707 * 299.99165 * 5 2 1 37 37 H 1.09003 * 109.46778 * 180.02562 * 5 2 1 38 38 H 1.08999 * 109.47126 * 60.00134 * 6 5 2 39 39 H 1.08996 * 109.46862 * 299.99835 * 6 5 2 40 40 H 0.97005 * 119.99423 * 0.02562 * 7 6 5 41 41 H 1.09004 * 109.46561 * 60.00018 * 10 8 7 42 42 H 1.09003 * 109.46933 * 300.01124 * 10 8 7 43 43 H 0.96996 * 119.99967 * 179.97438 * 16 15 13 44 44 H 1.07999 * 120.00352 * 359.97438 * 22 21 11 45 45 H 1.07995 * 120.00255 * 180.23001 * 23 22 21 46 46 H 1.07995 * 119.99860 * 179.82910 * 24 23 22 47 47 H 1.08003 * 119.99758 * 179.97438 * 25 24 23 48 48 H 1.08004 * 119.99873 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0399 -0.7214 1.2492 6 6 1.5299 -2.1638 1.2491 7 7 2.0188 -2.8547 2.4450 8 6 1.6929 -4.1448 2.6584 9 8 0.9952 -4.7341 1.8603 10 6 2.1962 -4.8557 3.8883 11 6 1.6861 -6.2981 3.8883 12 1 1.9552 -6.7787 2.9478 13 6 0.1869 -6.3007 4.0428 14 1 -0.2934 -5.5575 4.6620 15 6 -0.5713 -7.2520 3.3939 16 7 -1.8815 -7.2375 3.5066 17 14 0.2624 -8.5614 2.3547 18 1 0.3329 -8.1030 0.9440 19 1 1.6357 -8.7998 2.8670 20 1 -0.5187 -9.8223 2.4270 21 6 2.3105 -7.0517 5.0342 22 6 1.9985 -6.7112 6.3371 23 6 2.5683 -7.4051 7.3883 24 6 3.4564 -8.4342 7.1365 25 6 3.7724 -8.7712 5.8336 26 6 3.1996 -8.0799 4.7825 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9562 0.8900 33 1 1.6766 -1.7490 -1.2493 34 1 1.6766 -0.2075 -2.1393 35 1 3.1300 -0.7210 -1.2496 36 1 1.6767 -0.2074 2.1392 37 1 3.1300 -0.7209 1.2494 38 1 1.8933 -2.6776 0.3592 39 1 0.4400 -2.1638 1.2492 40 1 2.5764 -2.3832 3.0835 41 1 1.8339 -4.3418 4.7787 42 1 3.2862 -4.8560 3.8872 43 1 -2.4150 -7.9065 3.0498 44 1 1.3076 -5.9048 6.5339 45 1 2.3218 -7.1415 8.4061 46 1 3.9037 -8.9744 7.9577 47 1 4.4665 -9.5749 5.6369 48 1 3.4462 -8.3435 3.7646 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354376704.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:31 Heat of formation + Delta-G solvation = -40.466923 kcal Electronic energy + Delta-G solvation = -24811.191235 eV Core-core repulsion = 21443.887451 eV Total energy + Delta-G solvation = -3367.303784 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.30204 -38.52520 -37.79496 -34.36587 -33.74032 -31.63814 -30.19666 -29.73901 -28.44994 -27.44140 -27.39010 -25.82964 -23.23384 -22.33298 -21.80659 -20.22668 -19.29877 -18.55204 -16.90344 -16.46242 -15.92138 -15.71378 -15.35550 -14.58851 -14.48221 -14.41972 -14.16907 -13.93483 -13.64802 -13.46700 -12.96592 -12.72638 -12.56308 -12.47164 -12.28021 -12.16404 -11.86951 -11.82352 -11.79805 -11.78503 -11.27512 -10.98933 -10.84053 -10.71480 -10.65845 -10.59069 -10.50237 -10.31618 -9.84454 -9.58211 -9.12342 -8.88809 -8.51033 -8.38067 -8.18281 -7.79224 -5.94615 -3.91847 2.11498 2.16465 3.46113 3.50579 3.53456 3.53946 3.72282 4.54369 4.61475 4.63240 4.65206 4.69128 5.21800 5.22856 5.34038 5.37705 5.48122 5.53431 5.54984 5.57828 5.60020 5.64706 5.67849 5.71345 5.76320 5.85549 5.94152 5.96625 5.98668 6.05924 6.08163 6.10694 6.15322 6.26880 6.30902 6.34327 6.35343 6.65291 6.71591 6.85961 6.96564 7.05471 7.16015 7.29417 7.60558 7.75596 7.85810 8.10772 8.56570 9.03549 9.08132 9.70465 11.18497 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.016234 B = 0.003594 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.401491 B = 7787.981267 C = 8703.291936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.066 4.066 3 C -0.140 4.140 4 C -0.147 4.147 5 C -0.120 4.120 6 C 0.117 3.883 7 N -0.750 5.750 8 C 0.512 3.488 9 O -0.502 6.502 10 C -0.117 4.117 11 C 0.056 3.944 12 H 0.049 0.951 13 C -0.487 4.487 14 H 0.070 0.930 15 C 0.086 3.914 16 N -0.900 5.900 17 Si 0.870 3.130 18 H -0.277 1.277 19 H -0.255 1.255 20 H -0.295 1.295 21 C -0.039 4.039 22 C -0.100 4.100 23 C -0.128 4.128 24 C -0.149 4.149 25 C -0.128 4.128 26 C -0.135 4.135 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.392 0.608 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.261 0.739 44 H 0.120 0.880 45 H 0.110 0.890 46 H 0.107 0.893 47 H 0.108 0.892 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.676 12.656 -1.938 17.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.066 4.066 3 C -0.197 4.197 4 C -0.204 4.204 5 C -0.157 4.157 6 C -0.007 4.007 7 N -0.405 5.405 8 C 0.299 3.701 9 O -0.374 6.374 10 C -0.157 4.157 11 C 0.037 3.963 12 H 0.068 0.932 13 C -0.524 4.524 14 H 0.088 0.912 15 C -0.117 4.117 16 N -0.538 5.538 17 Si 0.698 3.302 18 H -0.202 1.202 19 H -0.180 1.180 20 H -0.222 1.222 21 C -0.040 4.040 22 C -0.118 4.118 23 C -0.147 4.147 24 C -0.168 4.168 25 C -0.146 4.146 26 C -0.153 4.153 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.225 0.775 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.071 0.929 44 H 0.138 0.862 45 H 0.128 0.872 46 H 0.125 0.875 47 H 0.126 0.874 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.956 12.096 -2.607 16.527 hybrid contribution 0.426 -0.576 -0.222 0.750 sum 11.382 11.520 -2.829 16.440 Atomic orbital electron populations 1.21977 0.94329 1.02617 1.01597 1.20471 0.95969 0.95207 0.94999 1.21863 1.00804 0.95356 1.01686 1.21971 1.00863 1.00880 0.96704 1.21840 1.00826 0.95045 0.98028 1.21377 0.99613 0.91175 0.88495 1.46161 1.55696 1.13041 1.25574 1.20812 0.80189 0.80876 0.88235 1.90740 1.34894 1.65567 1.46234 1.21660 0.99354 0.98993 0.95703 1.18128 0.96823 0.89129 0.92232 0.93242 1.20592 0.87290 1.14894 1.29655 0.91175 1.24877 0.94462 0.97114 0.95197 1.69889 1.04690 1.35512 1.43684 0.86958 0.80524 0.81018 0.81718 1.20249 1.17966 1.22180 1.20775 0.91585 0.95332 0.96316 1.20984 0.98637 1.00158 0.92062 1.21058 0.98125 0.96928 0.98542 1.20860 1.00564 0.99176 0.96167 1.20963 1.00653 0.99860 0.93108 1.21151 0.98202 0.97560 0.98424 0.92597 0.92795 0.91769 0.92763 0.92695 0.92679 0.91884 0.92788 0.92731 0.91390 0.91536 0.91905 0.91546 0.77538 0.89838 0.91459 0.92925 0.86192 0.87208 0.87463 0.87422 0.87070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.12 37.16 0.30 -1.15 16 2 C -0.07 -0.60 0.80 -154.51 -0.12 -0.73 16 3 C -0.14 -1.08 8.47 37.15 0.31 -0.76 16 4 C -0.15 -1.37 8.12 37.16 0.30 -1.07 16 5 C -0.12 -1.18 4.38 -26.73 -0.12 -1.29 16 6 C 0.12 1.60 4.97 -4.04 -0.02 1.58 16 7 N -0.75 -11.11 5.56 -60.29 -0.33 -11.45 16 8 C 0.51 10.16 7.58 -10.99 -0.08 10.08 16 9 O -0.50 -12.59 15.02 5.55 0.08 -12.51 16 10 C -0.12 -2.19 4.96 -27.88 -0.14 -2.33 16 11 C 0.06 1.29 1.17 -92.92 -0.11 1.18 16 12 H 0.05 1.22 4.94 -51.93 -0.26 0.96 16 13 C -0.49 -13.48 6.88 -34.44 -0.24 -13.71 16 14 H 0.07 2.09 8.06 -52.49 -0.42 1.67 16 15 C 0.09 2.54 5.47 -17.82 -0.10 2.44 16 16 N -0.90 -28.41 13.96 55.43 0.77 -27.63 16 17 Si 0.87 22.86 27.00 -169.99 -4.59 18.27 16 18 H -0.28 -7.46 7.11 56.52 0.40 -7.05 16 19 H -0.26 -6.18 4.72 56.52 0.27 -5.91 16 20 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 21 C -0.04 -0.83 4.65 -104.62 -0.49 -1.32 16 22 C -0.10 -1.97 8.93 -39.58 -0.35 -2.32 16 23 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 24 C -0.15 -2.45 10.05 -39.58 -0.40 -2.84 16 25 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 26 C -0.14 -2.66 8.70 -39.59 -0.34 -3.01 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.73 6.43 -51.93 -0.33 0.40 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.67 6.43 -51.93 -0.33 0.34 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.92 6.43 -51.93 -0.33 0.58 16 39 H 0.07 1.04 6.43 -51.93 -0.33 0.70 16 40 H 0.39 4.47 8.47 -40.82 -0.35 4.12 16 41 H 0.08 1.46 8.05 -51.93 -0.42 1.05 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 44 H 0.12 2.34 7.87 -52.49 -0.41 1.92 16 45 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 46 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 47 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 48 H 0.11 2.14 7.12 -52.48 -0.37 1.77 16 LS Contribution 377.96 15.07 5.70 5.70 Total: -1.00 -33.78 377.96 -9.09 -42.87 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -8.33 Total: 5.20 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: -2.38 Total: -20.44 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.44 Total: -39.08 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.08 Total: -12.51 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -4.59 Total: 18.27 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.78 -9.09 -42.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354376704.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.400 kcal (2) G-P(sol) polarization free energy of solvation -33.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds