Wall clock time and date at job start Tue Mar 31 2020 08:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47484 * 2 1 4 4 C 1.53000 * 109.46882 * 239.99818 * 2 1 3 5 5 C 1.53001 * 109.46965 * 120.00456 * 2 1 3 6 6 C 1.52995 * 109.47356 * 59.99882 * 5 2 1 7 7 N 1.46506 * 109.47121 * 179.97438 * 6 5 2 8 8 C 1.34769 * 119.99929 * 179.97438 * 7 6 5 9 9 O 1.21284 * 120.00091 * 0.02562 * 8 7 6 10 10 C 1.50703 * 120.00156 * 179.97438 * 8 7 6 11 11 C 1.52995 * 109.47348 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.47385 * 53.81101 * 11 10 8 13 13 C 1.50707 * 109.46800 * 293.80633 * 11 10 8 14 14 H 1.07996 * 119.99939 * 324.79144 * 13 11 10 15 15 C 1.37876 * 119.99516 * 144.79724 * 13 11 10 16 16 N 1.31517 * 119.99498 * 181.40280 * 15 13 11 17 17 Si 1.86799 * 120.00347 * 1.40222 * 15 13 11 18 18 H 1.48496 * 109.47059 * 267.09616 * 17 15 13 19 19 H 1.48498 * 109.46945 * 27.10055 * 17 15 13 20 20 H 1.48502 * 109.46861 * 147.09689 * 17 15 13 21 21 C 1.50699 * 109.46966 * 173.80920 * 11 10 8 22 22 C 1.38237 * 120.00135 * 66.64777 * 21 11 10 23 23 C 1.38237 * 120.00124 * 179.80917 * 22 21 11 24 24 C 1.38241 * 119.99834 * 0.39586 * 23 22 21 25 25 C 1.38239 * 119.99727 * 359.85702 * 24 23 22 26 26 C 1.38229 * 120.00171 * 359.95425 * 25 24 23 27 27 H 1.09004 * 109.46751 * 299.99834 * 1 2 3 28 28 H 1.08999 * 109.47135 * 59.99471 * 1 2 3 29 29 H 1.08996 * 109.47310 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47167 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.46957 * 300.00451 * 3 2 1 32 32 H 1.08999 * 109.46786 * 59.99874 * 3 2 1 33 33 H 1.09002 * 109.47815 * 300.00319 * 4 2 1 34 34 H 1.09005 * 109.47284 * 60.00242 * 4 2 1 35 35 H 1.09004 * 109.47492 * 179.97438 * 4 2 1 36 36 H 1.09004 * 109.46707 * 299.99165 * 5 2 1 37 37 H 1.09003 * 109.46778 * 180.02562 * 5 2 1 38 38 H 1.08999 * 109.47126 * 60.00134 * 6 5 2 39 39 H 1.08996 * 109.46862 * 299.99835 * 6 5 2 40 40 H 0.97005 * 119.99423 * 0.02562 * 7 6 5 41 41 H 1.09004 * 109.46561 * 60.00018 * 10 8 7 42 42 H 1.09003 * 109.46933 * 300.01124 * 10 8 7 43 43 H 0.96996 * 119.99967 * 179.97438 * 16 15 13 44 44 H 1.07999 * 120.00352 * 359.97438 * 22 21 11 45 45 H 1.07995 * 120.00255 * 180.23001 * 23 22 21 46 46 H 1.07995 * 119.99860 * 179.82910 * 24 23 22 47 47 H 1.08003 * 119.99758 * 179.97438 * 25 24 23 48 48 H 1.08004 * 119.99873 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0399 -0.7214 1.2492 6 6 1.5299 -2.1638 1.2491 7 7 2.0188 -2.8547 2.4450 8 6 1.6929 -4.1448 2.6584 9 8 0.9952 -4.7341 1.8603 10 6 2.1962 -4.8557 3.8883 11 6 1.6861 -6.2981 3.8883 12 1 1.9552 -6.7787 2.9478 13 6 0.1869 -6.3007 4.0428 14 1 -0.2934 -5.5575 4.6620 15 6 -0.5713 -7.2520 3.3939 16 7 -1.8815 -7.2375 3.5066 17 14 0.2624 -8.5614 2.3547 18 1 0.3329 -8.1030 0.9440 19 1 1.6357 -8.7998 2.8670 20 1 -0.5187 -9.8223 2.4270 21 6 2.3105 -7.0517 5.0342 22 6 1.9985 -6.7112 6.3371 23 6 2.5683 -7.4051 7.3883 24 6 3.4564 -8.4342 7.1365 25 6 3.7724 -8.7712 5.8336 26 6 3.1996 -8.0799 4.7825 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9562 0.8900 33 1 1.6766 -1.7490 -1.2493 34 1 1.6766 -0.2075 -2.1393 35 1 3.1300 -0.7210 -1.2496 36 1 1.6767 -0.2074 2.1392 37 1 3.1300 -0.7209 1.2494 38 1 1.8933 -2.6776 0.3592 39 1 0.4400 -2.1638 1.2492 40 1 2.5764 -2.3832 3.0835 41 1 1.8339 -4.3418 4.7787 42 1 3.2862 -4.8560 3.8872 43 1 -2.4150 -7.9065 3.0498 44 1 1.3076 -5.9048 6.5339 45 1 2.3218 -7.1415 8.4061 46 1 3.9037 -8.9744 7.9577 47 1 4.4665 -9.5749 5.6369 48 1 3.4462 -8.3435 3.7646 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354376704.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:30 Heat of formation + Delta-G solvation = -61.211515 kcal Electronic energy + Delta-G solvation = -24812.090788 eV Core-core repulsion = 21443.887451 eV Total energy + Delta-G solvation = -3368.203337 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.79965 -39.87283 -38.84588 -35.97093 -35.27468 -33.71222 -31.59673 -31.03496 -29.75468 -28.18093 -28.13746 -27.65406 -24.67441 -23.68153 -23.22523 -21.71039 -20.84628 -19.47888 -19.00276 -17.95725 -17.23236 -17.03980 -16.60687 -16.32777 -15.85002 -15.50281 -15.40908 -15.18057 -14.94035 -14.72221 -14.60781 -14.21745 -14.13417 -13.81996 -13.58029 -13.33041 -13.27886 -12.97809 -12.82228 -12.64539 -12.64096 -12.54447 -12.20480 -12.05929 -11.89248 -11.78480 -11.60665 -11.48258 -11.47909 -11.40420 -11.04067 -10.70766 -10.48373 -9.88969 -9.60069 -9.28656 -8.21725 -6.18461 0.69692 0.74561 1.31593 1.36851 1.42053 1.95139 2.41207 2.42398 3.09787 3.25018 3.80436 3.88718 3.88934 4.14075 4.16370 4.29591 4.31870 4.33072 4.35835 4.47098 4.50671 4.59586 4.65806 4.70176 4.77178 4.81957 4.86986 4.88408 4.93445 5.03198 5.04141 5.08699 5.10871 5.18622 5.21369 5.21597 5.38716 5.40043 5.42478 5.49646 5.52277 5.66456 5.70895 5.78316 5.84391 6.04342 6.34360 6.37801 6.79572 6.81068 7.45948 7.58320 8.95472 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.016234 B = 0.003594 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.401491 B = 7787.981267 C = 8703.291936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.065 4.065 3 C -0.135 4.135 4 C -0.147 4.147 5 C -0.108 4.108 6 C 0.117 3.883 7 N -0.727 5.727 8 C 0.507 3.493 9 O -0.566 6.566 10 C -0.112 4.112 11 C 0.057 3.943 12 H 0.032 0.968 13 C -0.464 4.464 14 H 0.034 0.966 15 C 0.022 3.978 16 N -0.955 5.955 17 Si 0.919 3.081 18 H -0.292 1.292 19 H -0.222 1.222 20 H -0.296 1.296 21 C -0.063 4.063 22 C -0.118 4.118 23 C -0.126 4.126 24 C -0.140 4.140 25 C -0.125 4.125 26 C -0.151 4.151 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.038 0.962 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.040 0.960 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.052 0.948 39 H 0.041 0.959 40 H 0.413 0.587 41 H 0.095 0.905 42 H 0.106 0.894 43 H 0.257 0.743 44 H 0.108 0.892 45 H 0.139 0.861 46 H 0.146 0.854 47 H 0.140 0.860 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.395 13.194 -0.415 20.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.066 4.066 3 C -0.192 4.192 4 C -0.204 4.204 5 C -0.146 4.146 6 C -0.007 4.007 7 N -0.382 5.382 8 C 0.294 3.706 9 O -0.443 6.443 10 C -0.152 4.152 11 C 0.037 3.963 12 H 0.050 0.950 13 C -0.502 4.502 14 H 0.052 0.948 15 C -0.174 4.174 16 N -0.597 5.597 17 Si 0.746 3.254 18 H -0.219 1.219 19 H -0.145 1.145 20 H -0.223 1.223 21 C -0.064 4.064 22 C -0.137 4.137 23 C -0.144 4.144 24 C -0.158 4.158 25 C -0.143 4.143 26 C -0.170 4.170 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.249 0.751 41 H 0.113 0.887 42 H 0.124 0.876 43 H 0.066 0.934 44 H 0.126 0.874 45 H 0.156 0.844 46 H 0.164 0.836 47 H 0.158 0.842 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 14.748 12.688 -1.045 19.483 hybrid contribution -0.656 -0.639 -0.597 1.093 sum 14.092 12.049 -1.642 18.614 Atomic orbital electron populations 1.21984 0.95247 1.01156 1.02231 1.20488 0.95232 0.96406 0.94456 1.21813 1.01394 0.93714 1.02278 1.21967 1.01452 0.99712 0.97269 1.21797 1.01828 0.92031 0.98937 1.21443 0.98239 0.93538 0.87447 1.45942 1.54584 1.11580 1.26109 1.21109 0.79422 0.82162 0.87890 1.90722 1.37945 1.67322 1.48337 1.21593 1.01580 0.96438 0.95580 1.18008 0.93760 0.91989 0.92499 0.95006 1.20825 0.90150 1.12368 1.26832 0.94818 1.25621 0.94874 0.99760 0.97115 1.70033 1.06253 1.37108 1.46298 0.86170 0.81349 0.78554 0.79354 1.21910 1.14494 1.22345 1.20486 0.93673 0.96375 0.95841 1.21013 0.99300 1.00881 0.92458 1.21397 0.97382 0.96445 0.99166 1.21338 0.99178 0.98200 0.97042 1.21337 1.00302 0.99871 0.92750 1.21259 0.98725 0.97579 0.99401 0.92297 0.91857 0.94262 0.91760 0.92112 0.92165 0.94044 0.91964 0.91732 0.90375 0.89626 0.92991 0.94101 0.75064 0.88677 0.87591 0.93402 0.87357 0.84367 0.83592 0.84203 0.87198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.12 71.98 0.58 -2.35 16 2 C -0.07 -1.11 0.80 -52.18 -0.04 -1.15 16 3 C -0.13 -1.72 8.47 71.98 0.61 -1.11 16 4 C -0.15 -2.62 8.12 71.98 0.58 -2.03 16 5 C -0.11 -1.96 4.38 30.59 0.13 -1.82 16 6 C 0.12 3.25 4.97 86.38 0.43 3.68 16 7 N -0.73 -21.21 5.56 -463.06 -2.57 -23.79 16 8 C 0.51 20.42 7.58 87.66 0.66 21.08 16 9 O -0.57 -29.76 15.02 -3.04 -0.05 -29.80 16 10 C -0.11 -4.14 4.96 29.85 0.15 -3.99 16 11 C 0.06 2.63 1.17 -12.29 -0.01 2.62 16 12 H 0.03 1.58 4.94 -2.39 -0.01 1.57 16 13 C -0.46 -26.74 6.88 25.60 0.18 -26.56 16 14 H 0.03 2.13 8.06 -2.91 -0.02 2.11 16 15 C 0.02 1.37 5.47 84.65 0.46 1.84 16 16 N -0.96 -63.67 13.96 21.45 0.30 -63.37 16 17 Si 0.92 48.80 27.00 68.60 1.85 50.65 16 18 H -0.29 -16.10 7.11 99.48 0.71 -15.40 16 19 H -0.22 -10.45 4.72 99.48 0.47 -9.98 16 20 H -0.30 -15.60 7.11 99.48 0.71 -14.90 16 21 C -0.06 -2.59 4.65 -19.87 -0.09 -2.68 16 22 C -0.12 -4.48 8.93 22.27 0.20 -4.28 16 23 C -0.13 -3.88 10.05 22.27 0.22 -3.66 16 24 C -0.14 -3.88 10.05 22.27 0.22 -3.66 16 25 C -0.12 -3.76 10.05 22.27 0.22 -3.53 16 26 C -0.15 -5.59 8.70 22.27 0.19 -5.40 16 27 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.04 0.96 6.43 -2.39 -0.02 0.94 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.72 8.14 -2.38 -0.02 0.71 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.04 0.91 6.43 -2.39 -0.02 0.89 16 34 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.05 1.58 6.43 -2.39 -0.02 1.56 16 39 H 0.04 1.36 6.43 -2.39 -0.02 1.34 16 40 H 0.41 8.55 8.47 -92.70 -0.79 7.77 16 41 H 0.09 3.29 8.05 -2.38 -0.02 3.27 16 42 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 43 H 0.26 16.38 8.31 -92.71 -0.77 15.61 16 44 H 0.11 4.24 7.87 -2.91 -0.02 4.22 16 45 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 46 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 47 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 48 H 0.11 4.00 7.12 -2.91 -0.02 3.98 16 Total: -1.00 -79.05 377.96 4.15 -74.90 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: -0.10 Total: 24.43 kcal Atomic # 6 Polarization: -37.74 SS G_CDS: 4.71 Total: -33.03 kcal Atomic # 7 Polarization: -84.89 SS G_CDS: -2.27 Total: -87.16 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.05 Total: -29.80 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 1.85 Total: 50.65 kcal Total: -79.05 4.15 -74.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354376704.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.689 kcal (2) G-P(sol) polarization free energy of solvation -79.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds