Wall clock time and date at job start Tue Mar 31 2020 08:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47035 * 2 1 4 4 C 1.53002 * 109.47441 * 239.99711 * 2 1 3 5 5 C 1.53006 * 109.47082 * 119.99922 * 2 1 3 6 6 C 1.52996 * 109.47213 * 59.99769 * 5 2 1 7 7 N 1.46495 * 109.47168 * 179.97438 * 6 5 2 8 8 C 1.34779 * 120.00324 * 180.02562 * 7 6 5 9 9 O 1.21278 * 119.99703 * 0.02562 * 8 7 6 10 10 C 1.50698 * 120.00201 * 179.97438 * 8 7 6 11 11 C 1.52996 * 109.47044 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.47493 * 305.98058 * 11 10 8 13 13 C 1.50699 * 109.46802 * 65.98063 * 11 10 8 14 14 H 1.07996 * 120.00319 * 26.91275 * 13 11 10 15 15 C 1.37882 * 120.00193 * 206.90875 * 13 11 10 16 16 N 1.31519 * 119.99874 * 353.28371 * 15 13 11 17 17 Si 1.86801 * 120.00294 * 173.55447 * 15 13 11 18 18 H 1.48497 * 109.47144 * 269.72519 * 17 15 13 19 19 H 1.48498 * 109.46829 * 29.72826 * 17 15 13 20 20 H 1.48507 * 109.46835 * 149.72714 * 17 15 13 21 21 C 1.50699 * 109.47289 * 185.97873 * 11 10 8 22 22 C 1.38237 * 119.99863 * 294.44402 * 21 11 10 23 23 C 1.38237 * 119.99818 * 179.78435 * 22 21 11 24 24 C 1.38229 * 120.00057 * 0.44553 * 23 22 21 25 25 C 1.38236 * 119.99936 * 359.80698 * 24 23 22 26 26 C 1.38230 * 120.00146 * 359.97438 * 25 24 23 27 27 H 1.08997 * 109.47260 * 300.00214 * 1 2 3 28 28 H 1.08996 * 109.46640 * 60.00328 * 1 2 3 29 29 H 1.08996 * 109.46658 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47106 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46803 * 299.99570 * 3 2 1 32 32 H 1.08997 * 109.47271 * 59.99792 * 3 2 1 33 33 H 1.08996 * 109.46894 * 300.00394 * 4 2 1 34 34 H 1.09002 * 109.46718 * 59.99854 * 4 2 1 35 35 H 1.08995 * 109.47286 * 180.02562 * 4 2 1 36 36 H 1.09006 * 109.46847 * 300.00108 * 5 2 1 37 37 H 1.08997 * 109.46874 * 180.02562 * 5 2 1 38 38 H 1.09006 * 109.46938 * 60.00395 * 6 5 2 39 39 H 1.08995 * 109.47200 * 300.00347 * 6 5 2 40 40 H 0.97006 * 119.99754 * 0.02562 * 7 6 5 41 41 H 1.09006 * 109.46831 * 60.00366 * 10 8 7 42 42 H 1.08995 * 109.47505 * 300.00197 * 10 8 7 43 43 H 0.97005 * 119.99795 * 354.69035 * 16 15 13 44 44 H 1.07999 * 119.99895 * 359.97438 * 22 21 11 45 45 H 1.08004 * 120.00271 * 180.27444 * 23 22 21 46 46 H 1.08007 * 120.00590 * 179.83396 * 24 23 22 47 47 H 1.08003 * 120.00202 * 180.02562 * 25 24 23 48 48 H 1.08004 * 120.00248 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 6 1.5300 -2.1637 1.2494 7 7 2.0188 -2.8544 2.4452 8 6 1.6937 -4.1450 2.6583 9 8 0.9969 -4.7345 1.8597 10 6 2.1971 -4.8557 3.8881 11 6 1.6869 -6.2981 3.8883 12 1 0.6022 -6.2999 3.7822 13 6 2.3055 -7.0497 2.7378 14 1 3.2662 -6.7464 2.3488 15 6 1.6448 -8.1247 2.1818 16 7 0.5414 -8.5768 2.7364 17 14 2.3212 -8.9436 0.6452 18 1 1.7443 -8.2918 -0.5579 19 1 3.7997 -8.8069 0.6214 20 1 1.9572 -10.3834 0.6506 21 6 2.0658 -6.9648 5.1855 22 6 3.3970 -7.1846 5.4867 23 6 3.7447 -7.7921 6.6787 24 6 2.7610 -8.1883 7.5653 25 6 1.4297 -7.9733 7.2618 26 6 1.0821 -7.3616 6.0719 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3632 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9563 0.8899 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7217 -1.2489 36 1 1.6766 -0.2074 2.1393 37 1 3.1300 -0.7208 1.2495 38 1 1.8934 -2.6776 0.3594 39 1 0.4400 -2.1637 1.2493 40 1 2.5765 -2.3830 3.0837 41 1 1.8341 -4.3422 4.7786 42 1 3.2870 -4.8554 3.8875 43 1 0.2340 -8.2050 3.5780 44 1 4.1654 -6.8788 4.7921 45 1 4.7849 -7.9598 6.9161 46 1 3.0325 -8.6654 8.4955 47 1 0.6610 -8.2824 7.9547 48 1 0.0419 -7.1940 5.8345 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354376709.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:33 Heat of formation + Delta-G solvation = -46.570950 kcal Electronic energy + Delta-G solvation = -24780.274612 eV Core-core repulsion = 21412.706138 eV Total energy + Delta-G solvation = -3367.568474 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.29763 -38.47451 -37.79688 -34.47455 -33.81432 -31.33003 -30.10343 -29.69751 -28.37497 -27.46173 -27.42208 -25.08987 -23.30829 -22.45272 -21.64110 -20.27181 -19.57203 -18.63605 -16.89207 -16.28843 -15.89543 -15.68635 -15.39175 -14.64705 -14.49389 -14.28007 -14.06963 -13.76715 -13.66866 -13.57602 -12.93760 -12.74766 -12.52996 -12.42483 -12.30221 -12.04852 -11.87625 -11.84902 -11.79981 -11.51680 -11.29605 -10.90991 -10.83002 -10.68467 -10.66625 -10.61174 -10.41692 -10.10755 -10.03272 -9.67208 -8.99148 -8.60581 -8.51181 -8.24767 -8.12946 -7.62261 -6.19904 -3.88538 2.20038 2.25715 3.51205 3.53647 3.57655 3.69753 3.70937 4.60338 4.62024 4.62446 4.66286 4.70123 5.18870 5.20145 5.33955 5.42710 5.48513 5.52167 5.57110 5.60458 5.62166 5.64504 5.68605 5.74313 5.77531 5.82687 5.91630 5.95281 6.02252 6.06343 6.09719 6.11619 6.18898 6.28584 6.30577 6.32979 6.43854 6.71148 6.80428 6.94296 6.95097 7.22424 7.24354 7.39639 7.74981 7.87057 8.08674 8.25878 8.54799 8.99495 9.07333 9.80248 11.19676 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.014383 B = 0.003625 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.242603 B = 7722.450793 C = 8966.826567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.066 4.066 3 C -0.140 4.140 4 C -0.148 4.148 5 C -0.120 4.120 6 C 0.117 3.883 7 N -0.751 5.751 8 C 0.511 3.489 9 O -0.500 6.500 10 C -0.116 4.116 11 C 0.072 3.928 12 H 0.049 0.951 13 C -0.566 4.566 14 H 0.045 0.955 15 C 0.032 3.968 16 N -0.908 5.908 17 Si 1.063 2.937 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.288 1.288 21 C -0.032 4.032 22 C -0.107 4.107 23 C -0.130 4.130 24 C -0.153 4.153 25 C -0.125 4.125 26 C -0.130 4.130 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.391 0.609 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.271 0.729 44 H 0.115 0.885 45 H 0.107 0.893 46 H 0.106 0.894 47 H 0.107 0.893 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.170 16.457 1.149 17.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.066 4.066 3 C -0.197 4.197 4 C -0.205 4.205 5 C -0.157 4.157 6 C -0.006 4.006 7 N -0.406 5.406 8 C 0.298 3.702 9 O -0.372 6.372 10 C -0.157 4.157 11 C 0.053 3.947 12 H 0.067 0.933 13 C -0.604 4.604 14 H 0.063 0.937 15 C -0.174 4.174 16 N -0.543 5.543 17 Si 0.893 3.107 18 H -0.215 1.215 19 H -0.217 1.217 20 H -0.214 1.214 21 C -0.033 4.033 22 C -0.125 4.125 23 C -0.148 4.148 24 C -0.171 4.171 25 C -0.143 4.143 26 C -0.149 4.149 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.224 0.776 41 H 0.083 0.917 42 H 0.097 0.903 43 H 0.082 0.918 44 H 0.133 0.867 45 H 0.125 0.875 46 H 0.124 0.876 47 H 0.125 0.875 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.314 14.798 -0.591 15.175 hybrid contribution 0.686 1.325 1.422 2.061 sum 4.000 16.123 0.831 16.632 Atomic orbital electron populations 1.21969 0.94449 1.02467 1.01547 1.20474 0.95871 0.95236 0.95065 1.21864 1.00896 0.95316 1.01640 1.21974 1.01005 1.00902 0.96607 1.21842 1.00991 0.94975 0.97935 1.21369 0.99215 0.91252 0.88792 1.46201 1.55889 1.12960 1.25567 1.20849 0.80471 0.80441 0.88450 1.90745 1.35773 1.64704 1.45943 1.21657 1.01492 0.98616 0.93903 1.17866 0.98157 0.88449 0.90215 0.93266 1.21557 1.06828 1.16024 1.15950 0.93665 1.25570 0.94674 0.95020 1.02099 1.70700 1.21750 1.42676 1.19157 0.83643 0.74966 0.76146 0.75987 1.21480 1.21724 1.21356 1.20861 0.92579 0.95265 0.94596 1.20929 0.96589 0.99377 0.95581 1.21015 0.98306 1.00288 0.95227 1.20823 0.93305 1.03328 0.99623 1.20964 0.95795 1.00234 0.97297 1.21078 0.99158 1.00569 0.94056 0.92703 0.92752 0.91876 0.92704 0.92670 0.92735 0.91820 0.92760 0.92639 0.91513 0.91438 0.91688 0.91868 0.77590 0.91729 0.90328 0.91759 0.86685 0.87455 0.87590 0.87457 0.87161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.12 37.16 0.30 -1.06 16 2 C -0.07 -0.59 0.80 -154.50 -0.12 -0.72 16 3 C -0.14 -1.06 8.47 37.16 0.31 -0.75 16 4 C -0.15 -1.41 8.12 37.16 0.30 -1.10 16 5 C -0.12 -1.17 4.38 -26.73 -0.12 -1.29 16 6 C 0.12 1.60 4.97 -4.05 -0.02 1.58 16 7 N -0.75 -11.28 5.56 -60.30 -0.33 -11.62 16 8 C 0.51 10.36 7.58 -10.99 -0.08 10.28 16 9 O -0.50 -12.74 15.02 5.56 0.08 -12.66 16 10 C -0.12 -2.29 4.95 -27.89 -0.14 -2.42 16 11 C 0.07 1.75 1.23 -92.93 -0.11 1.64 16 12 H 0.05 1.35 6.59 -51.93 -0.34 1.01 16 13 C -0.57 -15.58 6.35 -34.44 -0.22 -15.80 16 14 H 0.05 1.25 7.82 -52.49 -0.41 0.84 16 15 C 0.03 0.93 5.45 -17.82 -0.10 0.83 16 16 N -0.91 -28.02 13.56 55.43 0.75 -27.26 16 17 Si 1.06 26.63 29.91 -169.99 -5.08 21.55 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 C -0.03 -0.72 4.53 -104.62 -0.47 -1.20 16 22 C -0.11 -2.20 8.90 -39.58 -0.35 -2.55 16 23 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 24 C -0.15 -2.67 10.05 -39.59 -0.40 -3.07 16 25 C -0.12 -2.31 10.05 -39.59 -0.40 -2.71 16 26 C -0.13 -2.75 9.18 -39.59 -0.36 -3.11 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.67 6.43 -51.93 -0.33 0.34 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.70 6.43 -51.93 -0.33 0.36 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.99 6.43 -51.93 -0.33 0.66 16 39 H 0.06 0.93 6.43 -51.93 -0.33 0.60 16 40 H 0.39 4.58 8.47 -40.82 -0.35 4.24 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.08 1.44 7.97 -51.93 -0.41 1.03 16 43 H 0.27 8.24 6.24 -40.82 -0.25 7.98 16 44 H 0.12 2.32 7.85 -52.49 -0.41 1.91 16 45 H 0.11 1.64 8.06 -52.48 -0.42 1.21 16 46 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 47 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 48 H 0.11 2.30 7.95 -52.48 -0.42 1.88 16 LS Contribution 382.74 15.07 5.77 5.77 Total: -1.00 -33.40 382.74 -9.42 -42.81 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -8.22 Total: 5.62 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: -2.38 Total: -24.21 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.42 Total: -38.88 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.08 Total: -12.66 kcal Atomic # 14 Polarization: 26.63 SS G_CDS: -5.08 Total: 21.55 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.40 -9.42 -42.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354376709.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.758 kcal (2) G-P(sol) polarization free energy of solvation -33.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds