Wall clock time and date at job start Tue Mar 31 2020 08:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47035 * 2 1 4 4 C 1.53002 * 109.47441 * 239.99711 * 2 1 3 5 5 C 1.53006 * 109.47082 * 119.99922 * 2 1 3 6 6 C 1.52996 * 109.47213 * 59.99769 * 5 2 1 7 7 N 1.46495 * 109.47168 * 179.97438 * 6 5 2 8 8 C 1.34779 * 120.00324 * 180.02562 * 7 6 5 9 9 O 1.21278 * 119.99703 * 0.02562 * 8 7 6 10 10 C 1.50698 * 120.00201 * 179.97438 * 8 7 6 11 11 C 1.52996 * 109.47044 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.47493 * 305.98058 * 11 10 8 13 13 C 1.50699 * 109.46802 * 65.98063 * 11 10 8 14 14 H 1.07996 * 120.00319 * 26.91275 * 13 11 10 15 15 C 1.37882 * 120.00193 * 206.90875 * 13 11 10 16 16 N 1.31519 * 119.99874 * 353.28371 * 15 13 11 17 17 Si 1.86801 * 120.00294 * 173.55447 * 15 13 11 18 18 H 1.48497 * 109.47144 * 269.72519 * 17 15 13 19 19 H 1.48498 * 109.46829 * 29.72826 * 17 15 13 20 20 H 1.48507 * 109.46835 * 149.72714 * 17 15 13 21 21 C 1.50699 * 109.47289 * 185.97873 * 11 10 8 22 22 C 1.38237 * 119.99863 * 294.44402 * 21 11 10 23 23 C 1.38237 * 119.99818 * 179.78435 * 22 21 11 24 24 C 1.38229 * 120.00057 * 0.44553 * 23 22 21 25 25 C 1.38236 * 119.99936 * 359.80698 * 24 23 22 26 26 C 1.38230 * 120.00146 * 359.97438 * 25 24 23 27 27 H 1.08997 * 109.47260 * 300.00214 * 1 2 3 28 28 H 1.08996 * 109.46640 * 60.00328 * 1 2 3 29 29 H 1.08996 * 109.46658 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47106 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46803 * 299.99570 * 3 2 1 32 32 H 1.08997 * 109.47271 * 59.99792 * 3 2 1 33 33 H 1.08996 * 109.46894 * 300.00394 * 4 2 1 34 34 H 1.09002 * 109.46718 * 59.99854 * 4 2 1 35 35 H 1.08995 * 109.47286 * 180.02562 * 4 2 1 36 36 H 1.09006 * 109.46847 * 300.00108 * 5 2 1 37 37 H 1.08997 * 109.46874 * 180.02562 * 5 2 1 38 38 H 1.09006 * 109.46938 * 60.00395 * 6 5 2 39 39 H 1.08995 * 109.47200 * 300.00347 * 6 5 2 40 40 H 0.97006 * 119.99754 * 0.02562 * 7 6 5 41 41 H 1.09006 * 109.46831 * 60.00366 * 10 8 7 42 42 H 1.08995 * 109.47505 * 300.00197 * 10 8 7 43 43 H 0.97005 * 119.99795 * 354.69035 * 16 15 13 44 44 H 1.07999 * 119.99895 * 359.97438 * 22 21 11 45 45 H 1.08004 * 120.00271 * 180.27444 * 23 22 21 46 46 H 1.08007 * 120.00590 * 179.83396 * 24 23 22 47 47 H 1.08003 * 120.00202 * 180.02562 * 25 24 23 48 48 H 1.08004 * 120.00248 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 6 1.5300 -2.1637 1.2494 7 7 2.0188 -2.8544 2.4452 8 6 1.6937 -4.1450 2.6583 9 8 0.9969 -4.7345 1.8597 10 6 2.1971 -4.8557 3.8881 11 6 1.6869 -6.2981 3.8883 12 1 0.6022 -6.2999 3.7822 13 6 2.3055 -7.0497 2.7378 14 1 3.2662 -6.7464 2.3488 15 6 1.6448 -8.1247 2.1818 16 7 0.5414 -8.5768 2.7364 17 14 2.3212 -8.9436 0.6452 18 1 1.7443 -8.2918 -0.5579 19 1 3.7997 -8.8069 0.6214 20 1 1.9572 -10.3834 0.6506 21 6 2.0658 -6.9648 5.1855 22 6 3.3970 -7.1846 5.4867 23 6 3.7447 -7.7921 6.6787 24 6 2.7610 -8.1883 7.5653 25 6 1.4297 -7.9733 7.2618 26 6 1.0821 -7.3616 6.0719 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3632 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9563 0.8899 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7217 -1.2489 36 1 1.6766 -0.2074 2.1393 37 1 3.1300 -0.7208 1.2495 38 1 1.8934 -2.6776 0.3594 39 1 0.4400 -2.1637 1.2493 40 1 2.5765 -2.3830 3.0837 41 1 1.8341 -4.3422 4.7786 42 1 3.2870 -4.8554 3.8875 43 1 0.2340 -8.2050 3.5780 44 1 4.1654 -6.8788 4.7921 45 1 4.7849 -7.9598 6.9161 46 1 3.0325 -8.6654 8.4955 47 1 0.6610 -8.2824 7.9547 48 1 0.0419 -7.1940 5.8345 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354376709.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:33 Heat of formation + Delta-G solvation = -65.849181 kcal Electronic energy + Delta-G solvation = -24781.110579 eV Core-core repulsion = 21412.706138 eV Total energy + Delta-G solvation = -3368.404441 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.83539 -39.89870 -38.86551 -36.19387 -35.33054 -33.29582 -31.61431 -31.04630 -29.69274 -28.18937 -28.14499 -26.95183 -24.92955 -23.75146 -23.17147 -21.83404 -21.18665 -19.53665 -18.80734 -17.91129 -17.24673 -17.06565 -16.65640 -16.08753 -15.71242 -15.66727 -15.43837 -15.25829 -14.89847 -14.87485 -14.37825 -14.24124 -14.04876 -13.92556 -13.44710 -13.34115 -13.18669 -12.92578 -12.68641 -12.66242 -12.62121 -12.55584 -12.21810 -12.06036 -11.95817 -11.73638 -11.63371 -11.50648 -11.49775 -11.41646 -10.75590 -10.57363 -10.36137 -9.93260 -9.64511 -9.27340 -8.44968 -6.11609 0.67467 0.73466 1.46989 1.57349 1.71416 1.89618 2.36619 2.61424 3.10552 3.36032 3.78336 3.87122 3.87427 4.12797 4.13554 4.27155 4.28336 4.29589 4.33764 4.44069 4.48930 4.57740 4.62047 4.67486 4.76317 4.80436 4.83210 4.86879 4.92390 5.01849 5.02259 5.07524 5.09589 5.16140 5.20242 5.23386 5.37670 5.40634 5.43084 5.48461 5.50806 5.63643 5.74370 5.81984 5.94720 6.23917 6.30907 6.40460 6.73888 6.78607 7.53635 7.63655 8.95426 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.014383 B = 0.003625 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.242603 B = 7722.450793 C = 8966.826567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.065 4.065 3 C -0.135 4.135 4 C -0.148 4.148 5 C -0.108 4.108 6 C 0.117 3.883 7 N -0.727 5.727 8 C 0.508 3.492 9 O -0.564 6.564 10 C -0.110 4.110 11 C 0.074 3.926 12 H 0.003 0.997 13 C -0.556 4.556 14 H 0.039 0.961 15 C -0.025 4.025 16 N -0.945 5.945 17 Si 1.098 2.902 18 H -0.291 1.291 19 H -0.266 1.266 20 H -0.286 1.286 21 C -0.056 4.056 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.144 4.144 25 C -0.125 4.125 26 C -0.153 4.153 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.040 0.960 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.040 0.960 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.046 0.954 39 H 0.048 0.952 40 H 0.412 0.588 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.261 0.739 44 H 0.114 0.886 45 H 0.143 0.857 46 H 0.147 0.853 47 H 0.135 0.865 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.652 17.938 2.894 19.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.066 4.066 3 C -0.192 4.192 4 C -0.205 4.205 5 C -0.146 4.146 6 C -0.006 4.006 7 N -0.382 5.382 8 C 0.295 3.705 9 O -0.441 6.441 10 C -0.151 4.151 11 C 0.054 3.946 12 H 0.021 0.979 13 C -0.594 4.594 14 H 0.057 0.943 15 C -0.224 4.224 16 N -0.583 5.583 17 Si 0.923 3.077 18 H -0.218 1.218 19 H -0.191 1.191 20 H -0.212 1.212 21 C -0.057 4.057 22 C -0.140 4.140 23 C -0.142 4.142 24 C -0.162 4.162 25 C -0.143 4.143 26 C -0.172 4.172 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.249 0.751 41 H 0.111 0.889 42 H 0.115 0.885 43 H 0.071 0.929 44 H 0.132 0.868 45 H 0.161 0.839 46 H 0.165 0.835 47 H 0.153 0.847 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.848 16.348 1.185 17.403 hybrid contribution -0.077 0.952 0.968 1.360 sum 5.771 17.300 2.154 18.364 Atomic orbital electron populations 1.21971 0.94851 1.01265 1.02383 1.20490 0.95555 0.96302 0.94219 1.21815 1.01284 0.93738 1.02382 1.21978 1.01317 0.99743 0.97508 1.21800 1.01657 0.92009 0.99132 1.21457 0.98481 0.93439 0.87254 1.45958 1.54718 1.11368 1.26150 1.21027 0.79701 0.81764 0.87960 1.90726 1.38812 1.66587 1.47962 1.21564 1.02369 0.96251 0.94872 1.17691 0.95168 0.91047 0.90659 0.97894 1.21813 1.06018 1.15033 1.16498 0.94301 1.26727 0.94818 0.96383 1.04440 1.70785 1.23541 1.44314 1.19672 0.83191 0.75890 0.75357 0.73230 1.21777 1.19104 1.21190 1.20623 0.93951 0.96747 0.94331 1.21011 0.95509 1.00507 0.97017 1.21412 1.00451 0.98493 0.93870 1.21314 0.92381 1.01731 1.00744 1.21301 0.97529 0.99025 0.96435 1.21132 0.98353 1.02061 0.95632 0.91966 0.91858 0.94080 0.92046 0.92054 0.91940 0.94126 0.91832 0.92101 0.89955 0.90143 0.93593 0.93323 0.75145 0.88939 0.88488 0.92883 0.86820 0.83895 0.83499 0.84683 0.88708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 8.12 71.98 0.58 -2.05 16 2 C -0.07 -1.08 0.80 -52.18 -0.04 -1.12 16 3 C -0.13 -1.68 8.47 71.98 0.61 -1.07 16 4 C -0.15 -2.74 8.12 71.98 0.58 -2.15 16 5 C -0.11 -1.93 4.38 30.60 0.13 -1.80 16 6 C 0.12 3.23 4.97 86.38 0.43 3.66 16 7 N -0.73 -21.54 5.56 -463.08 -2.57 -24.11 16 8 C 0.51 21.12 7.58 87.66 0.66 21.79 16 9 O -0.56 -30.40 15.02 -3.02 -0.05 -30.45 16 10 C -0.11 -4.37 4.95 29.85 0.15 -4.23 16 11 C 0.07 3.71 1.23 -12.29 -0.02 3.69 16 12 H 0.00 0.17 6.59 -2.39 -0.02 0.15 16 13 C -0.56 -31.59 6.35 25.60 0.16 -31.43 16 14 H 0.04 2.19 7.82 -2.91 -0.02 2.17 16 15 C -0.03 -1.54 5.45 84.66 0.46 -1.07 16 16 N -0.94 -61.25 13.56 21.45 0.29 -60.96 16 17 Si 1.10 55.07 29.91 68.60 2.05 57.12 16 18 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 21 C -0.06 -2.54 4.53 -19.87 -0.09 -2.63 16 22 C -0.12 -4.90 8.90 22.27 0.20 -4.70 16 23 C -0.12 -4.09 10.05 22.27 0.22 -3.87 16 24 C -0.14 -4.47 10.05 22.27 0.22 -4.25 16 25 C -0.13 -4.38 10.05 22.27 0.22 -4.15 16 26 C -0.15 -6.58 9.18 22.27 0.20 -6.38 16 27 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.04 0.91 6.43 -2.39 -0.02 0.89 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.04 0.93 6.43 -2.39 -0.02 0.91 16 34 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.05 1.46 6.43 -2.38 -0.02 1.45 16 39 H 0.05 1.50 6.43 -2.39 -0.02 1.49 16 40 H 0.41 8.81 8.47 -92.70 -0.79 8.03 16 41 H 0.09 3.11 8.14 -2.38 -0.02 3.09 16 42 H 0.10 3.46 7.97 -2.39 -0.02 3.44 16 43 H 0.26 16.88 6.24 -92.70 -0.58 16.31 16 44 H 0.11 4.47 7.85 -2.91 -0.02 4.45 16 45 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 46 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 47 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 48 H 0.09 4.22 7.95 -2.91 -0.02 4.20 16 Total: -1.00 -77.59 382.74 4.76 -72.83 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: 0.33 Total: 27.33 kcal Atomic # 6 Polarization: -46.47 SS G_CDS: 4.71 Total: -41.77 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: -2.28 Total: -85.07 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -0.05 Total: -30.45 kcal Atomic # 14 Polarization: 55.07 SS G_CDS: 2.05 Total: 57.12 kcal Total: -77.59 4.76 -72.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354376709.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.986 kcal (2) G-P(sol) polarization free energy of solvation -77.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds