Wall clock time and date at job start Tue Mar 31 2020 08:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46861 * 2 1 4 4 C 1.52995 * 109.47410 * 120.00252 * 2 1 3 5 5 C 1.53001 * 109.47392 * 64.99941 * 4 2 1 6 6 C 1.52995 * 109.47356 * 180.02562 * 5 4 2 7 7 N 1.46506 * 109.47121 * 179.97438 * 6 5 4 8 8 C 1.34769 * 119.99929 * 179.97438 * 7 6 5 9 9 O 1.21284 * 120.00091 * 0.02562 * 8 7 6 10 10 C 1.50703 * 120.00156 * 179.97438 * 8 7 6 11 11 C 1.52995 * 109.47348 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.47385 * 53.81101 * 11 10 8 13 13 C 1.50707 * 109.46800 * 293.80633 * 11 10 8 14 14 H 1.07996 * 119.99939 * 324.79144 * 13 11 10 15 15 C 1.37876 * 119.99516 * 144.79724 * 13 11 10 16 16 N 1.31517 * 119.99498 * 181.40280 * 15 13 11 17 17 Si 1.86799 * 120.00347 * 1.40222 * 15 13 11 18 18 H 1.48496 * 109.47059 * 267.09616 * 17 15 13 19 19 H 1.48498 * 109.46945 * 27.10055 * 17 15 13 20 20 H 1.48502 * 109.46861 * 147.09689 * 17 15 13 21 21 C 1.50699 * 109.46966 * 173.80920 * 11 10 8 22 22 C 1.38237 * 120.00135 * 66.64777 * 21 11 10 23 23 C 1.38237 * 120.00124 * 179.80917 * 22 21 11 24 24 C 1.38241 * 119.99834 * 0.39586 * 23 22 21 25 25 C 1.38239 * 119.99727 * 359.85702 * 24 23 22 26 26 C 1.38229 * 120.00171 * 359.95425 * 25 24 23 27 27 H 1.08995 * 109.46906 * 299.99514 * 1 2 3 28 28 H 1.08996 * 109.47250 * 59.99576 * 1 2 3 29 29 H 1.09002 * 109.46813 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47191 * 240.00513 * 2 1 3 31 31 H 1.09006 * 109.46493 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47531 * 299.99694 * 3 2 1 33 33 H 1.08995 * 109.46963 * 60.00521 * 3 2 1 34 34 H 1.09004 * 109.46991 * 304.99823 * 4 2 1 35 35 H 1.09002 * 109.47337 * 185.00359 * 4 2 1 36 36 H 1.09004 * 109.46707 * 59.99678 * 5 4 2 37 37 H 1.09003 * 109.46778 * 300.00789 * 5 4 2 38 38 H 1.08999 * 109.47126 * 60.00134 * 6 5 4 39 39 H 1.08996 * 109.46862 * 299.99835 * 6 5 4 40 40 H 0.97005 * 119.99423 * 0.02562 * 7 6 5 41 41 H 1.09004 * 109.46561 * 60.00018 * 10 8 7 42 42 H 1.09003 * 109.46933 * 300.01124 * 10 8 7 43 43 H 0.96996 * 119.99967 * 179.97438 * 16 15 13 44 44 H 1.07999 * 120.00352 * 359.97438 * 22 21 11 45 45 H 1.07995 * 120.00255 * 180.23001 * 23 22 21 46 46 H 1.07995 * 119.99860 * 179.82910 * 24 23 22 47 47 H 1.08003 * 119.99758 * 179.97438 * 25 24 23 48 48 H 1.08004 * 119.99873 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6354 -2.1955 1.1879 6 6 2.1449 -2.9166 2.4373 7 7 1.7568 -4.3282 2.3789 8 6 2.1003 -5.1634 3.3793 9 8 2.7303 -4.7465 4.3281 10 6 1.7006 -6.6152 3.3195 11 6 2.2102 -7.3364 4.5689 12 1 1.8649 -6.8099 5.4586 13 6 3.7170 -7.3631 4.5540 14 1 4.2460 -7.4642 3.6179 15 6 4.4200 -7.2585 5.7354 16 7 5.7351 -7.2540 5.7198 17 14 3.5047 -7.1231 7.3581 18 1 3.3178 -5.6909 7.7030 19 1 2.1785 -7.7797 7.2346 20 1 4.2902 -7.7912 8.4267 21 6 1.6829 -8.7480 4.5843 22 6 2.1009 -9.6525 3.6260 23 6 1.6202 -10.9485 3.6425 24 6 0.7153 -11.3378 4.6123 25 6 0.2934 -10.4318 5.5674 26 6 0.7770 -9.1370 5.5533 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6055 -0.2618 2.1369 35 1 3.1264 -0.6443 1.2951 36 1 2.0699 -2.6549 0.3001 37 1 0.5490 -2.2724 1.1419 38 1 1.7099 -2.4571 3.3249 39 1 3.2311 -2.8397 2.4836 40 1 1.2532 -4.6616 1.6199 41 1 2.1345 -7.0752 2.4316 42 1 0.6142 -6.6914 3.2740 43 1 6.2297 -7.1800 6.5509 44 1 2.8050 -9.3474 2.8660 45 1 1.9496 -11.6561 2.8961 46 1 0.3377 -12.3495 4.6235 47 1 -0.4139 -10.7358 6.3249 48 1 0.4477 -8.4293 6.2998 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354413841.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:36 Heat of formation + Delta-G solvation = -46.323917 kcal Electronic energy + Delta-G solvation = -24309.578934 eV Core-core repulsion = 20942.021172 eV Total energy + Delta-G solvation = -3367.557762 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.20549 -38.38374 -37.29834 -34.70541 -33.89328 -31.69481 -31.17307 -30.18826 -28.95286 -27.43138 -26.51405 -25.05486 -22.63389 -21.89656 -21.64524 -20.44920 -19.90881 -19.06007 -16.90612 -16.48336 -15.96234 -15.84654 -15.46376 -14.88709 -14.58816 -14.28548 -14.17561 -13.97083 -13.74009 -13.47396 -12.98516 -12.74069 -12.58589 -12.50554 -12.40878 -12.29329 -11.95103 -11.81960 -11.76465 -11.65420 -11.23022 -10.98444 -10.90578 -10.75821 -10.70343 -10.61431 -10.50528 -10.31802 -9.84661 -9.58281 -9.12637 -8.89361 -8.54183 -8.38527 -8.18317 -7.79324 -5.94775 -3.92076 2.11469 2.16392 3.46065 3.50512 3.53138 3.53643 3.71404 4.53970 4.56493 4.61608 4.65600 4.70037 5.02491 5.11005 5.30212 5.35185 5.39357 5.45823 5.53395 5.55041 5.57004 5.57795 5.65216 5.68614 5.71134 5.76834 5.85977 5.95526 5.96814 6.00284 6.05603 6.09869 6.12593 6.23743 6.26433 6.26892 6.35233 6.65120 6.71487 6.85870 6.95030 7.05205 7.15981 7.29340 7.60451 7.75504 7.85699 8.09942 8.56394 9.03317 9.07511 9.70267 11.18343 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.016298 B = 0.003135 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.552939 B = 8928.209342 C = 9955.326817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C -0.148 4.148 4 C -0.113 4.113 5 C -0.130 4.130 6 C 0.121 3.879 7 N -0.749 5.749 8 C 0.512 3.488 9 O -0.502 6.502 10 C -0.117 4.117 11 C 0.057 3.943 12 H 0.049 0.951 13 C -0.488 4.488 14 H 0.070 0.930 15 C 0.085 3.915 16 N -0.900 5.900 17 Si 0.870 3.130 18 H -0.277 1.277 19 H -0.255 1.255 20 H -0.295 1.295 21 C -0.040 4.040 22 C -0.100 4.100 23 C -0.128 4.128 24 C -0.149 4.149 25 C -0.128 4.128 26 C -0.135 4.135 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.392 0.608 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.261 0.739 44 H 0.120 0.880 45 H 0.110 0.890 46 H 0.107 0.893 47 H 0.108 0.892 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.571 7.942 -11.185 18.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 C -0.206 4.206 4 C -0.151 4.151 5 C -0.168 4.168 6 C -0.003 4.003 7 N -0.405 5.405 8 C 0.299 3.701 9 O -0.374 6.374 10 C -0.157 4.157 11 C 0.037 3.963 12 H 0.068 0.932 13 C -0.525 4.525 14 H 0.088 0.912 15 C -0.117 4.117 16 N -0.538 5.538 17 Si 0.698 3.302 18 H -0.202 1.202 19 H -0.180 1.180 20 H -0.222 1.222 21 C -0.040 4.040 22 C -0.118 4.118 23 C -0.146 4.146 24 C -0.168 4.168 25 C -0.146 4.146 26 C -0.153 4.153 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.225 0.775 41 H 0.102 0.898 42 H 0.086 0.914 43 H 0.071 0.929 44 H 0.138 0.862 45 H 0.128 0.872 46 H 0.125 0.875 47 H 0.126 0.874 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.908 8.267 -10.325 17.798 hybrid contribution -0.428 -0.139 0.607 0.756 sum -12.336 8.128 -9.718 17.683 Atomic orbital electron populations 1.21902 0.95361 1.01901 1.01522 1.21119 0.95854 0.96125 0.98466 1.21847 1.01047 0.96064 1.01597 1.21575 1.01295 0.94373 0.97883 1.21844 1.01426 0.95556 0.97997 1.21211 1.00202 0.81447 0.97461 1.46146 1.60166 1.09398 1.24758 1.20823 0.79047 0.88320 0.81944 1.90742 1.36615 1.77266 1.32781 1.21661 0.99838 0.91761 1.02447 1.18124 0.97430 0.87133 0.93598 0.93249 1.20598 0.87131 1.49856 0.94911 0.91164 1.24881 0.94486 0.93437 0.98867 1.69888 1.06053 1.50525 1.27308 0.86956 0.80826 0.78572 0.83859 1.20238 1.17957 1.22164 1.20778 0.91518 0.99014 0.92733 1.20985 0.98804 0.92664 0.99392 1.21056 0.98275 0.96379 0.98926 1.20860 1.00205 0.98773 0.96918 1.20963 1.00706 0.94090 0.98824 1.21150 0.98514 0.96125 0.99530 0.92738 0.93020 0.92358 0.91249 0.92655 0.92890 0.92715 0.91676 0.91557 0.91480 0.91344 0.92233 0.91888 0.77484 0.89822 0.91442 0.92913 0.86190 0.87208 0.87463 0.87422 0.87071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.95 37.16 0.33 -0.74 16 2 C -0.10 -0.74 2.92 -90.62 -0.26 -1.01 16 3 C -0.15 -1.06 9.19 37.16 0.34 -0.72 16 4 C -0.11 -1.00 4.68 -26.73 -0.13 -1.13 16 5 C -0.13 -1.24 5.08 -26.73 -0.14 -1.38 16 6 C 0.12 1.64 5.67 -4.04 -0.02 1.62 16 7 N -0.75 -11.08 5.56 -60.29 -0.33 -11.42 16 8 C 0.51 10.18 7.58 -10.99 -0.08 10.09 16 9 O -0.50 -12.63 15.02 5.55 0.08 -12.55 16 10 C -0.12 -2.19 4.96 -27.88 -0.14 -2.33 16 11 C 0.06 1.30 1.17 -92.92 -0.11 1.19 16 12 H 0.05 1.22 4.94 -51.93 -0.26 0.96 16 13 C -0.49 -13.53 6.88 -34.44 -0.24 -13.76 16 14 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 15 C 0.09 2.54 5.47 -17.82 -0.10 2.44 16 16 N -0.90 -28.46 13.96 55.43 0.77 -27.69 16 17 Si 0.87 22.89 27.00 -169.99 -4.59 18.30 16 18 H -0.28 -7.46 7.11 56.52 0.40 -7.06 16 19 H -0.26 -6.18 4.72 56.52 0.27 -5.91 16 20 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 21 C -0.04 -0.84 4.65 -104.62 -0.49 -1.33 16 22 C -0.10 -1.97 8.93 -39.58 -0.35 -2.32 16 23 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 24 C -0.15 -2.44 10.05 -39.58 -0.40 -2.84 16 25 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 26 C -0.14 -2.66 8.70 -39.59 -0.34 -3.00 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.41 6.56 -51.93 -0.34 0.07 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.59 6.56 -51.93 -0.34 0.25 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.39 4.44 8.47 -40.82 -0.35 4.09 16 41 H 0.08 1.47 8.05 -51.93 -0.42 1.05 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 44 H 0.12 2.34 7.87 -52.49 -0.41 1.92 16 45 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 46 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 47 H 0.11 1.56 8.06 -52.48 -0.42 1.13 16 48 H 0.11 2.14 7.12 -52.48 -0.37 1.77 16 LS Contribution 383.29 15.07 5.78 5.78 Total: -1.00 -33.93 383.29 -9.73 -43.66 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -8.52 Total: 4.32 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -2.92 Total: -20.39 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.44 Total: -39.10 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.08 Total: -12.55 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -4.59 Total: 18.30 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.93 -9.73 -43.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354413841.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.663 kcal (2) G-P(sol) polarization free energy of solvation -33.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds