Wall clock time and date at job start Tue Mar 31 2020 09:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.46677 * 2 1 4 4 C 1.52994 * 109.47168 * 119.99929 * 2 1 3 5 5 C 1.53000 * 109.47534 * 174.19111 * 4 2 1 6 6 H 1.09001 * 109.46592 * 57.36245 * 5 4 2 7 7 C 1.52995 * 109.47682 * 177.36829 * 5 4 2 8 8 N 1.46903 * 109.46915 * 293.19078 * 7 5 4 9 9 C 1.47952 * 111.00029 * 177.96384 * 8 7 5 10 10 C 1.53940 * 86.18139 * 222.41734 * 9 8 7 11 11 O 1.42898 * 113.73453 * 269.25524 * 10 9 8 12 12 C 1.50698 * 113.73141 * 138.07695 * 10 9 8 13 13 H 1.07997 * 120.00728 * 5.50681 * 12 10 9 14 14 C 1.37879 * 120.00004 * 185.50235 * 12 10 9 15 15 N 1.31514 * 120.00474 * 203.57781 * 14 12 10 16 16 Si 1.86811 * 119.99596 * 23.58300 * 14 12 10 17 17 H 1.48501 * 109.47074 * 180.02562 * 16 14 12 18 18 H 1.48498 * 109.46721 * 299.99716 * 16 14 12 19 19 H 1.48494 * 109.47058 * 59.99744 * 16 14 12 20 20 C 1.47961 * 110.99869 * 78.60336 * 8 7 5 21 21 C 1.50706 * 109.47062 * 297.36998 * 5 4 2 22 22 C 1.38234 * 119.99699 * 299.72380 * 21 5 4 23 23 C 1.38239 * 120.00011 * 179.78859 * 22 21 5 24 24 C 1.38236 * 119.99613 * 0.43737 * 23 22 21 25 25 C 1.38235 * 120.00457 * 359.81469 * 24 23 22 26 26 C 1.38230 * 120.00263 * 119.99187 * 21 5 4 27 27 H 1.09000 * 109.47709 * 299.99804 * 1 2 3 28 28 H 1.08999 * 109.47435 * 60.00463 * 1 2 3 29 29 H 1.09005 * 109.47134 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46822 * 239.99981 * 2 1 3 31 31 H 1.09005 * 109.46930 * 185.77783 * 3 2 1 32 32 H 1.08995 * 109.47689 * 305.77600 * 3 2 1 33 33 H 1.08997 * 109.47472 * 65.78001 * 3 2 1 34 34 H 1.08999 * 109.47415 * 54.19257 * 4 2 1 35 35 H 1.09001 * 109.47455 * 294.19302 * 4 2 1 36 36 H 1.08998 * 109.47252 * 173.19397 * 7 5 4 37 37 H 1.08993 * 109.47099 * 53.18786 * 7 5 4 38 38 H 1.09002 * 113.76328 * 108.10044 * 9 8 7 39 39 H 1.09000 * 113.85964 * 336.74507 * 9 8 7 40 40 H 0.96691 * 114.00175 * 173.61071 * 11 10 9 41 41 H 0.96996 * 120.00071 * 354.96245 * 15 14 12 42 42 H 1.08994 * 113.75960 * 23.26490 * 20 8 7 43 43 H 1.09002 * 113.76073 * 251.89795 * 20 8 7 44 44 H 1.08001 * 119.99758 * 359.97438 * 22 21 5 45 45 H 1.07995 * 120.00316 * 180.27371 * 23 22 21 46 46 H 1.08001 * 119.99580 * 179.83269 * 24 23 22 47 47 H 1.07997 * 120.00450 * 180.02562 * 25 24 23 48 48 H 1.08000 * 119.99856 * 359.97438 * 26 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5630 -0.8489 1.1784 6 1 4.0063 0.1418 1.0777 7 6 4.0793 -1.5112 2.4573 8 7 3.8551 -0.6137 3.5984 9 6 4.2987 -1.2420 4.8623 10 6 3.0067 -0.6747 5.4777 11 8 3.1633 0.6274 6.0451 12 6 2.3010 -1.6359 6.3992 13 1 2.7569 -2.5841 6.6426 14 6 1.0731 -1.3046 6.9318 15 7 0.6665 -1.8688 8.0480 16 14 -0.0132 -0.0544 6.0676 17 1 -1.2705 0.1248 6.8373 18 1 0.7014 1.2443 5.9785 19 1 -0.3336 -0.5380 4.7007 20 6 2.4452 -0.6653 4.0445 21 6 3.9416 -1.6920 -0.0120 22 6 3.4971 -2.9977 -0.1036 23 6 3.8407 -3.7697 -1.1977 24 6 4.6364 -3.2387 -2.1957 25 6 5.0853 -1.9347 -2.1015 26 6 4.7380 -1.1614 -1.0095 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1250 1.4443 -0.1035 32 1 1.5946 1.9854 -0.8337 33 1 1.7635 1.9256 0.9372 34 1 1.5943 -1.7145 1.3028 35 1 1.7640 -0.1509 2.1362 36 1 5.1460 -1.7121 2.3573 37 1 3.5470 -2.4480 2.6217 38 1 5.2092 -0.8061 5.2736 39 1 4.3269 -2.3311 4.8272 40 1 2.3359 1.0280 6.3449 41 1 1.1962 -2.5705 8.4577 42 1 1.9307 -1.5856 3.7683 43 1 1.8749 0.2314 3.8022 44 1 2.8788 -3.4137 0.6781 45 1 3.4898 -4.7883 -1.2715 46 1 4.9071 -3.8427 -3.0491 47 1 5.7065 -1.5197 -2.8814 48 1 5.0885 -0.1425 -0.9360 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354597947.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:45 Heat of formation + Delta-G solvation = -0.442498 kcal Electronic energy + Delta-G solvation = -26008.960100 eV Core-core repulsion = 22643.391906 eV Total energy + Delta-G solvation = -3365.568195 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.12766 -38.99183 -36.74939 -34.69377 -32.98092 -32.47458 -30.93876 -29.57567 -27.78608 -27.10539 -25.79155 -25.22423 -23.49030 -22.62065 -21.65610 -20.26717 -19.57671 -18.81497 -17.78049 -16.90131 -15.90424 -15.61893 -15.23017 -14.86425 -14.82531 -14.58827 -14.16308 -13.72590 -13.49133 -13.40698 -13.36684 -13.09300 -12.77345 -12.68638 -12.19599 -12.05150 -12.01137 -11.81721 -11.55687 -11.44670 -11.27472 -11.04651 -10.95605 -10.75230 -10.59417 -10.36515 -10.29489 -10.17571 -10.08802 -9.70511 -9.30518 -8.94196 -8.87088 -8.64789 -8.31480 -7.90180 -6.65694 -4.31569 1.35589 1.37898 3.14005 3.27959 3.43001 3.77131 4.25698 4.49863 4.73275 4.86198 4.92992 4.94371 4.98547 5.03568 5.07296 5.11472 5.35415 5.41065 5.50372 5.53301 5.56322 5.63823 5.70012 5.78948 5.81518 5.87787 5.92329 5.94831 5.99997 6.00930 6.06352 6.11520 6.17238 6.23396 6.26326 6.33390 6.40408 6.43832 6.46979 6.49472 6.57654 6.65217 6.75700 6.95562 7.01533 7.02298 7.76955 7.80601 8.16242 8.67352 8.92587 9.39569 10.68596 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.016955 B = 0.004491 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.027218 B = 6232.588196 C = 6839.791019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.121 4.121 5 C -0.043 4.043 6 H 0.087 0.913 7 C 0.028 3.972 8 N -0.473 5.473 9 C 0.024 3.976 10 C 0.208 3.792 11 O -0.564 6.564 12 C -0.626 4.626 13 H 0.063 0.937 14 C 0.037 3.963 15 N -0.884 5.884 16 Si 1.040 2.960 17 H -0.281 1.281 18 H -0.278 1.278 19 H -0.275 1.275 20 C -0.032 4.032 21 C -0.059 4.059 22 C -0.115 4.115 23 C -0.119 4.119 24 C -0.132 4.132 25 C -0.121 4.121 26 C -0.117 4.117 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.039 0.961 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.362 0.638 41 H 0.273 0.727 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.116 0.884 47 H 0.117 0.883 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.516 0.807 -19.742 20.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.158 4.158 5 C -0.061 4.061 6 H 0.105 0.895 7 C -0.101 4.101 8 N -0.196 5.196 9 C -0.105 4.105 10 C 0.167 3.833 11 O -0.373 6.373 12 C -0.664 4.664 13 H 0.082 0.918 14 C -0.171 4.171 15 N -0.516 5.516 16 Si 0.869 3.131 17 H -0.206 1.206 18 H -0.205 1.205 19 H -0.201 1.201 20 C -0.161 4.161 21 C -0.060 4.060 22 C -0.133 4.133 23 C -0.137 4.137 24 C -0.150 4.150 25 C -0.139 4.139 26 C -0.135 4.135 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.057 0.943 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.212 0.788 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.138 0.862 45 H 0.136 0.864 46 H 0.134 0.866 47 H 0.135 0.865 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.998 2.110 -19.958 20.292 hybrid contribution 0.595 -1.819 0.011 1.914 sum 3.592 0.291 -19.947 20.270 Atomic orbital electron populations 1.21841 0.95626 1.01524 1.01478 1.21096 0.95301 0.96334 0.98530 1.21853 1.00911 0.95997 1.01506 1.22085 0.93890 1.00985 0.98883 1.20189 0.96334 0.98563 0.91048 0.89521 1.22648 1.00391 0.94936 0.92102 1.68489 1.09801 1.40033 1.01240 1.23910 0.99657 0.97315 0.89615 1.20243 0.92075 0.82498 0.88488 1.86369 1.36393 1.32734 1.81777 1.22250 1.05919 1.05165 1.33023 0.91843 1.25778 0.96699 1.00864 0.93742 1.70835 1.44262 1.23662 1.12857 0.84120 0.76852 0.75585 0.76572 1.20633 1.20536 1.20095 1.25095 0.90854 1.00159 1.00033 1.19931 0.96091 0.94298 0.95682 1.21063 1.00173 0.93938 0.98092 1.21121 0.98513 0.99683 0.94399 1.21075 0.99077 0.95744 0.99089 1.21096 1.00229 0.94461 0.98106 1.21076 0.98503 0.99844 0.94124 0.92582 0.93139 0.92928 0.91544 0.92698 0.93345 0.92501 0.92253 0.89515 0.91518 0.94262 0.90470 0.91447 0.78832 0.91687 0.91067 0.91232 0.86196 0.86408 0.86571 0.86459 0.86293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.19 37.16 0.34 -1.37 16 2 C -0.09 -1.15 2.79 -90.63 -0.25 -1.40 16 3 C -0.15 -1.69 8.82 37.16 0.33 -1.36 16 4 C -0.12 -1.70 3.19 -26.73 -0.09 -1.79 16 5 C -0.04 -0.59 2.09 -91.77 -0.19 -0.78 16 6 H 0.09 1.24 6.34 -51.93 -0.33 0.91 16 7 C 0.03 0.45 4.10 -3.82 -0.02 0.44 16 8 N -0.47 -9.13 6.21 -238.26 -1.48 -10.61 16 9 C 0.02 0.50 7.37 -2.77 -0.02 0.48 16 10 C 0.21 4.98 1.07 -90.84 -0.10 4.88 16 11 O -0.56 -13.93 13.46 -35.23 -0.47 -14.40 16 12 C -0.63 -17.08 8.94 -34.44 -0.31 -17.38 16 13 H 0.06 1.86 8.06 -52.49 -0.42 1.43 16 14 C 0.04 1.03 5.35 -17.82 -0.10 0.93 16 15 N -0.88 -25.95 13.70 55.43 0.76 -25.20 16 16 Si 1.04 23.53 25.05 -169.99 -4.26 19.27 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -5.73 5.55 56.52 0.31 -5.42 16 19 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 20 C -0.03 -0.67 3.11 -2.77 -0.01 -0.68 16 21 C -0.06 -0.75 3.55 -104.62 -0.37 -1.12 16 22 C -0.11 -1.41 8.75 -39.58 -0.35 -1.76 16 23 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 24 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 25 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 26 C -0.12 -1.35 9.67 -39.58 -0.38 -1.73 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.82 7.12 -51.93 -0.37 0.45 16 31 H 0.05 0.62 6.82 -51.93 -0.35 0.27 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.84 7.32 -51.93 -0.38 0.46 16 35 H 0.09 1.39 4.58 -51.93 -0.24 1.15 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.04 0.65 7.14 -51.93 -0.37 0.28 16 38 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 39 H 0.07 1.39 7.87 -51.93 -0.41 0.98 16 40 H 0.36 8.44 5.27 45.56 0.24 8.68 16 41 H 0.27 8.00 8.73 -40.82 -0.36 7.64 16 42 H 0.07 1.49 7.28 -51.93 -0.38 1.11 16 43 H 0.07 1.42 6.15 -51.93 -0.32 1.10 16 44 H 0.12 1.48 7.17 -52.49 -0.38 1.10 16 45 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 46 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 47 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 48 H 0.12 1.23 7.95 -52.49 -0.42 0.82 16 LS Contribution 365.26 15.07 5.50 5.50 Total: -1.00 -29.00 365.26 -10.24 -39.24 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: -7.59 Total: 13.92 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: -2.70 Total: -27.72 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: -0.72 Total: -35.81 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.47 Total: -14.40 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -4.26 Total: 19.27 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.00 -10.24 -39.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354597947.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.797 kcal (2) G-P(sol) polarization free energy of solvation -29.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds