Wall clock time and date at job start Tue Mar 31 2020 09:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.46677 * 2 1 4 4 C 1.52994 * 109.47168 * 119.99929 * 2 1 3 5 5 C 1.53000 * 109.47534 * 174.19111 * 4 2 1 6 6 H 1.09001 * 109.46592 * 57.36245 * 5 4 2 7 7 C 1.52995 * 109.47682 * 177.36829 * 5 4 2 8 8 N 1.46903 * 109.46915 * 293.19078 * 7 5 4 9 9 C 1.47952 * 111.00029 * 177.96384 * 8 7 5 10 10 C 1.53940 * 86.18139 * 222.41734 * 9 8 7 11 11 O 1.42898 * 113.73453 * 269.25524 * 10 9 8 12 12 C 1.50698 * 113.73141 * 138.07695 * 10 9 8 13 13 H 1.07997 * 120.00728 * 5.50681 * 12 10 9 14 14 C 1.37879 * 120.00004 * 185.50235 * 12 10 9 15 15 N 1.31514 * 120.00474 * 203.57781 * 14 12 10 16 16 Si 1.86811 * 119.99596 * 23.58300 * 14 12 10 17 17 H 1.48501 * 109.47074 * 180.02562 * 16 14 12 18 18 H 1.48498 * 109.46721 * 299.99716 * 16 14 12 19 19 H 1.48494 * 109.47058 * 59.99744 * 16 14 12 20 20 C 1.47961 * 110.99869 * 78.60336 * 8 7 5 21 21 C 1.50706 * 109.47062 * 297.36998 * 5 4 2 22 22 C 1.38234 * 119.99699 * 299.72380 * 21 5 4 23 23 C 1.38239 * 120.00011 * 179.78859 * 22 21 5 24 24 C 1.38236 * 119.99613 * 0.43737 * 23 22 21 25 25 C 1.38235 * 120.00457 * 359.81469 * 24 23 22 26 26 C 1.38230 * 120.00263 * 119.99187 * 21 5 4 27 27 H 1.09000 * 109.47709 * 299.99804 * 1 2 3 28 28 H 1.08999 * 109.47435 * 60.00463 * 1 2 3 29 29 H 1.09005 * 109.47134 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46822 * 239.99981 * 2 1 3 31 31 H 1.09005 * 109.46930 * 185.77783 * 3 2 1 32 32 H 1.08995 * 109.47689 * 305.77600 * 3 2 1 33 33 H 1.08997 * 109.47472 * 65.78001 * 3 2 1 34 34 H 1.08999 * 109.47415 * 54.19257 * 4 2 1 35 35 H 1.09001 * 109.47455 * 294.19302 * 4 2 1 36 36 H 1.08998 * 109.47252 * 173.19397 * 7 5 4 37 37 H 1.08993 * 109.47099 * 53.18786 * 7 5 4 38 38 H 1.09002 * 113.76328 * 108.10044 * 9 8 7 39 39 H 1.09000 * 113.85964 * 336.74507 * 9 8 7 40 40 H 0.96691 * 114.00175 * 173.61071 * 11 10 9 41 41 H 0.96996 * 120.00071 * 354.96245 * 15 14 12 42 42 H 1.08994 * 113.75960 * 23.26490 * 20 8 7 43 43 H 1.09002 * 113.76073 * 251.89795 * 20 8 7 44 44 H 1.08001 * 119.99758 * 359.97438 * 22 21 5 45 45 H 1.07995 * 120.00316 * 180.27371 * 23 22 21 46 46 H 1.08001 * 119.99580 * 179.83269 * 24 23 22 47 47 H 1.07997 * 120.00450 * 180.02562 * 25 24 23 48 48 H 1.08000 * 119.99856 * 359.97438 * 26 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5630 -0.8489 1.1784 6 1 4.0063 0.1418 1.0777 7 6 4.0793 -1.5112 2.4573 8 7 3.8551 -0.6137 3.5984 9 6 4.2987 -1.2420 4.8623 10 6 3.0067 -0.6747 5.4777 11 8 3.1633 0.6274 6.0451 12 6 2.3010 -1.6359 6.3992 13 1 2.7569 -2.5841 6.6426 14 6 1.0731 -1.3046 6.9318 15 7 0.6665 -1.8688 8.0480 16 14 -0.0132 -0.0544 6.0676 17 1 -1.2705 0.1248 6.8373 18 1 0.7014 1.2443 5.9785 19 1 -0.3336 -0.5380 4.7007 20 6 2.4452 -0.6653 4.0445 21 6 3.9416 -1.6920 -0.0120 22 6 3.4971 -2.9977 -0.1036 23 6 3.8407 -3.7697 -1.1977 24 6 4.6364 -3.2387 -2.1957 25 6 5.0853 -1.9347 -2.1015 26 6 4.7380 -1.1614 -1.0095 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1250 1.4443 -0.1035 32 1 1.5946 1.9854 -0.8337 33 1 1.7635 1.9256 0.9372 34 1 1.5943 -1.7145 1.3028 35 1 1.7640 -0.1509 2.1362 36 1 5.1460 -1.7121 2.3573 37 1 3.5470 -2.4480 2.6217 38 1 5.2092 -0.8061 5.2736 39 1 4.3269 -2.3311 4.8272 40 1 2.3359 1.0280 6.3449 41 1 1.1962 -2.5705 8.4577 42 1 1.9307 -1.5856 3.7683 43 1 1.8749 0.2314 3.8022 44 1 2.8788 -3.4137 0.6781 45 1 3.4898 -4.7883 -1.2715 46 1 4.9071 -3.8427 -3.0491 47 1 5.7065 -1.5197 -2.8814 48 1 5.0885 -0.1425 -0.9360 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354597947.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:44 Heat of formation + Delta-G solvation = -19.511960 kcal Electronic energy + Delta-G solvation = -26009.787014 eV Core-core repulsion = 22643.391906 eV Total energy + Delta-G solvation = -3366.395109 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.46938 -40.23267 -37.83041 -36.36669 -34.61361 -34.12285 -31.76305 -30.79763 -29.18994 -28.01008 -27.48855 -26.85774 -24.75070 -23.59021 -22.87496 -21.41527 -20.98604 -20.31661 -19.77163 -17.85291 -17.49242 -17.06085 -16.53184 -16.25457 -15.92464 -15.76378 -15.28579 -15.22861 -15.04278 -14.57968 -14.45754 -14.28466 -14.13670 -13.85458 -13.64147 -13.38492 -13.27593 -13.04404 -12.76583 -12.71671 -12.48798 -12.38490 -12.17902 -12.14912 -11.90533 -11.77367 -11.62975 -11.38177 -11.31144 -11.22796 -11.15792 -10.80130 -10.14833 -9.78411 -9.70188 -9.52632 -8.84624 -6.54052 0.50404 0.54698 1.33815 1.46456 1.64364 2.35636 2.85877 2.88911 3.00774 3.59863 3.70427 3.85336 3.91194 4.03411 4.10230 4.13971 4.16239 4.19722 4.27210 4.35749 4.40743 4.51937 4.53408 4.67634 4.68792 4.71083 4.75023 4.81309 4.83322 4.89136 4.91349 5.02939 5.09185 5.11335 5.16727 5.18429 5.25787 5.26030 5.35275 5.38540 5.51276 5.57235 5.65132 5.66984 5.75301 5.82570 5.88136 6.16770 6.19101 6.40297 7.01100 7.27023 8.46440 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.016955 B = 0.004491 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.027218 B = 6232.588196 C = 6839.791019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.144 4.144 4 C -0.119 4.119 5 C -0.031 4.031 6 H 0.086 0.914 7 C 0.030 3.970 8 N -0.467 5.467 9 C 0.025 3.975 10 C 0.190 3.810 11 O -0.571 6.571 12 C -0.636 4.636 13 H 0.025 0.975 14 C -0.006 4.006 15 N -0.915 5.915 16 Si 1.074 2.926 17 H -0.284 1.284 18 H -0.245 1.245 19 H -0.251 1.251 20 C -0.013 4.013 21 C -0.071 4.071 22 C -0.130 4.130 23 C -0.126 4.126 24 C -0.132 4.132 25 C -0.122 4.122 26 C -0.124 4.124 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.033 0.967 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.366 0.634 41 H 0.257 0.743 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.111 0.889 45 H 0.133 0.867 46 H 0.141 0.859 47 H 0.142 0.858 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.746 2.032 -23.154 23.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 C -0.201 4.201 4 C -0.157 4.157 5 C -0.050 4.050 6 H 0.104 0.896 7 C -0.099 4.099 8 N -0.189 5.189 9 C -0.104 4.104 10 C 0.149 3.851 11 O -0.380 6.380 12 C -0.673 4.673 13 H 0.044 0.956 14 C -0.208 4.208 15 N -0.549 5.549 16 Si 0.894 3.106 17 H -0.210 1.210 18 H -0.170 1.170 19 H -0.175 1.175 20 C -0.142 4.142 21 C -0.071 4.071 22 C -0.148 4.148 23 C -0.144 4.144 24 C -0.149 4.149 25 C -0.140 4.140 26 C -0.142 4.142 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.051 0.949 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.217 0.783 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.099 0.901 44 H 0.129 0.871 45 H 0.151 0.849 46 H 0.159 0.841 47 H 0.160 0.840 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.258 3.327 -23.381 23.840 hybrid contribution 0.621 -2.314 1.072 2.625 sum 3.879 1.013 -22.309 22.666 Atomic orbital electron populations 1.21849 0.95150 1.01575 1.01934 1.21026 0.95661 0.96491 0.97418 1.21837 1.01108 0.95513 1.01625 1.22025 0.94074 1.00490 0.99074 1.20034 0.96091 0.98469 0.90397 0.89601 1.22691 1.00849 0.94323 0.91989 1.68452 1.08537 1.40576 1.01312 1.23861 0.98629 0.97328 0.90606 1.20385 0.93797 0.81637 0.89234 1.86354 1.36915 1.32637 1.82110 1.22419 1.06326 1.04603 1.33945 0.95642 1.27221 0.97979 1.02299 0.93288 1.70976 1.44565 1.24668 1.14655 0.83751 0.75272 0.75003 0.76556 1.20957 1.17012 1.17468 1.24822 0.91713 1.00491 0.97139 1.19786 0.97369 0.94304 0.95679 1.21107 1.00779 0.94273 0.98690 1.21361 0.98545 1.00371 0.94115 1.21423 0.98085 0.96015 0.99419 1.21419 0.99941 0.94435 0.98168 1.21248 0.98235 1.00556 0.94205 0.93200 0.91604 0.93123 0.91380 0.92550 0.91860 0.93442 0.92972 0.91432 0.90948 0.94878 0.90321 0.91536 0.78340 0.93364 0.91512 0.90061 0.87132 0.84910 0.84099 0.84030 0.85343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.19 71.98 0.66 -2.46 16 2 C -0.09 -1.96 2.79 -10.80 -0.03 -1.99 16 3 C -0.14 -2.99 8.82 71.98 0.64 -2.35 16 4 C -0.12 -3.20 3.19 30.59 0.10 -3.10 16 5 C -0.03 -0.82 2.09 -11.54 -0.02 -0.85 16 6 H 0.09 2.28 6.34 -2.39 -0.02 2.27 16 7 C 0.03 0.95 4.10 86.30 0.35 1.30 16 8 N -0.47 -17.54 6.21 -910.92 -5.66 -23.20 16 9 C 0.02 1.05 7.37 86.41 0.64 1.68 16 10 C 0.19 9.09 1.07 -10.89 -0.01 9.07 16 11 O -0.57 -27.65 13.46 -148.98 -2.01 -29.66 16 12 C -0.64 -35.64 8.94 25.60 0.23 -35.41 16 13 H 0.03 1.57 8.06 -2.91 -0.02 1.54 16 14 C -0.01 -0.35 5.35 84.66 0.45 0.10 16 15 N -0.91 -55.46 13.70 21.45 0.29 -55.17 16 16 Si 1.07 46.49 25.05 68.60 1.72 48.21 16 17 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 18 H -0.24 -9.25 5.55 99.48 0.55 -8.70 16 19 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 20 C -0.01 -0.51 3.11 86.41 0.27 -0.24 16 21 C -0.07 -1.66 3.55 -19.87 -0.07 -1.73 16 22 C -0.13 -3.05 8.75 22.27 0.19 -2.85 16 23 C -0.13 -2.48 10.05 22.27 0.22 -2.26 16 24 C -0.13 -2.26 10.05 22.27 0.22 -2.03 16 25 C -0.12 -2.12 10.05 22.27 0.22 -1.89 16 26 C -0.12 -2.54 9.67 22.27 0.22 -2.32 16 27 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.07 1.52 7.12 -2.39 -0.02 1.51 16 31 H 0.06 1.14 6.82 -2.38 -0.02 1.13 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.05 1.45 7.32 -2.39 -0.02 1.43 16 35 H 0.07 2.06 4.58 -2.39 -0.01 2.05 16 36 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.03 1.09 7.14 -2.39 -0.02 1.07 16 38 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 39 H 0.07 2.80 7.87 -2.39 -0.02 2.78 16 40 H 0.37 16.51 5.27 -74.06 -0.39 16.12 16 41 H 0.26 15.87 8.73 -92.71 -0.81 15.06 16 42 H 0.07 2.76 7.28 -2.39 -0.02 2.74 16 43 H 0.08 3.13 6.15 -2.39 -0.01 3.12 16 44 H 0.11 2.71 7.17 -2.91 -0.02 2.68 16 45 H 0.13 2.12 8.06 -2.91 -0.02 2.10 16 46 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 47 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 48 H 0.13 2.31 7.95 -2.91 -0.02 2.29 16 Total: -1.00 -63.49 365.26 -1.02 -64.51 By element: Atomic # 1 Polarization: 42.27 SS G_CDS: 0.35 Total: 42.62 kcal Atomic # 6 Polarization: -51.60 SS G_CDS: 4.28 Total: -47.32 kcal Atomic # 7 Polarization: -73.00 SS G_CDS: -5.36 Total: -78.36 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -2.01 Total: -29.66 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.72 Total: 48.21 kcal Total: -63.49 -1.02 -64.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354597947.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.996 kcal (2) G-P(sol) polarization free energy of solvation -63.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds