Wall clock time and date at job start Tue Mar 31 2020 08:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47399 * 2 1 4 4 C 1.52993 * 109.47399 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47107 * 60.00363 * 4 3 2 6 6 C 1.52994 * 109.47297 * 300.00187 * 4 3 2 7 7 N 1.46503 * 109.47032 * 180.02562 * 4 3 2 8 8 C 1.34779 * 120.00000 * 180.02562 * 7 4 3 9 9 O 1.21282 * 119.99663 * 0.02562 * 8 7 4 10 10 C 1.50700 * 120.00268 * 179.97438 * 8 7 4 11 11 C 1.52999 * 109.47010 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.47465 * 305.00010 * 11 10 8 13 13 C 1.50698 * 109.47080 * 65.00685 * 11 10 8 14 14 H 1.08002 * 120.00223 * 26.94016 * 13 11 10 15 15 C 1.37886 * 120.00006 * 206.93845 * 13 11 10 16 16 N 1.31507 * 120.00030 * 186.61954 * 15 13 11 17 17 Si 1.86801 * 119.99698 * 6.90022 * 15 13 11 18 18 H 1.48503 * 109.46742 * 274.25466 * 17 15 13 19 19 H 1.48504 * 109.47191 * 34.25328 * 17 15 13 20 20 H 1.48499 * 109.46928 * 154.25467 * 17 15 13 21 21 C 1.50706 * 109.46940 * 184.99987 * 11 10 8 22 22 C 1.38233 * 119.99857 * 297.92917 * 21 11 10 23 23 C 1.38240 * 119.99757 * 179.78388 * 22 21 11 24 24 C 1.38239 * 119.99979 * 0.44453 * 23 22 21 25 25 C 1.38242 * 120.00017 * 359.80708 * 24 23 22 26 26 C 1.38230 * 119.99928 * 118.19592 * 21 11 10 27 27 H 1.09004 * 109.47470 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46918 * 299.99863 * 1 2 3 29 29 H 1.09000 * 109.47323 * 59.99944 * 1 2 3 30 30 H 1.09000 * 109.46918 * 240.00137 * 2 1 3 31 31 H 1.09000 * 109.47323 * 120.00056 * 2 1 3 32 32 H 1.09000 * 109.46973 * 60.00171 * 3 2 1 33 33 H 1.09005 * 109.47120 * 300.00726 * 3 2 1 34 34 H 1.08998 * 109.47311 * 180.02562 * 5 4 3 35 35 H 1.09004 * 109.46469 * 300.00017 * 5 4 3 36 36 H 1.09000 * 109.47280 * 59.99666 * 5 4 3 37 37 H 1.09000 * 109.47096 * 299.99841 * 6 4 3 38 38 H 1.08999 * 109.47240 * 60.00331 * 6 4 3 39 39 H 1.09006 * 109.47323 * 180.02562 * 6 4 3 40 40 H 0.96996 * 120.00246 * 359.97438 * 7 4 3 41 41 H 1.09000 * 109.46914 * 60.00101 * 10 8 7 42 42 H 1.09000 * 109.47087 * 300.00167 * 10 8 7 43 43 H 0.96994 * 119.99996 * 180.27656 * 16 15 13 44 44 H 1.07994 * 120.00554 * 359.97438 * 22 21 11 45 45 H 1.07996 * 120.00426 * 180.26872 * 23 22 21 46 46 H 1.08000 * 120.00114 * 179.82966 * 24 23 22 47 47 H 1.07993 * 120.00100 * 180.02562 * 25 24 23 48 48 H 1.07999 * 120.00162 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0794 0.7215 -1.2503 6 6 4.0805 0.7210 1.2482 7 7 4.0582 2.8237 0.0000 8 6 5.3833 3.0700 -0.0010 9 8 6.1714 2.1481 -0.0028 10 6 5.8857 4.4908 -0.0009 11 6 7.4157 4.4907 -0.0014 12 1 7.7793 3.9012 0.8401 13 6 7.9176 3.8906 -1.2894 14 1 7.3111 3.9423 -2.1817 15 6 9.1510 3.2755 -1.3289 16 7 9.6460 2.8678 -2.4770 17 14 10.1153 3.0144 0.2495 18 1 10.9086 4.2327 0.5522 19 1 9.1738 2.7466 1.3663 20 1 11.0301 1.8562 0.0848 21 6 7.9181 5.9062 0.1225 22 6 7.6195 6.8338 -0.8579 23 6 8.0767 8.1333 -0.7420 24 6 8.8401 8.5027 0.3496 25 6 9.1430 7.5736 1.3275 26 6 8.6822 6.2753 1.2137 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 5.1694 0.7210 -1.2506 35 1 3.7160 -0.3062 -1.2502 36 1 3.7157 1.2354 -2.1400 37 1 3.7176 1.2347 2.1384 38 1 3.7172 -0.3066 1.2481 39 1 5.1705 0.7214 1.2480 40 1 3.4280 3.5610 0.0003 41 1 5.5231 5.0043 0.8895 42 1 5.5217 5.0049 -0.8904 43 1 10.5119 2.4315 -2.5043 44 1 7.0266 6.5443 -1.7128 45 1 7.8398 8.8592 -1.5057 46 1 9.1995 9.5172 0.4388 47 1 9.7391 7.8623 2.1805 48 1 8.9187 5.5496 1.9776 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355480518.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:44 Heat of formation + Delta-G solvation = -33.132577 kcal Electronic energy + Delta-G solvation = -25424.983947 eV Core-core repulsion = 22057.998204 eV Total energy + Delta-G solvation = -3366.985743 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.70796 -38.56191 -36.92973 -34.12075 -33.37968 -31.71101 -30.92934 -30.18940 -28.71444 -27.01419 -26.66526 -25.85067 -22.95872 -22.24774 -21.80399 -20.23139 -19.05745 -18.99986 -16.92963 -16.66652 -16.02295 -15.36865 -15.30570 -14.62082 -14.53203 -14.12762 -13.91210 -13.86354 -13.42458 -13.16696 -13.03459 -12.71913 -12.56066 -12.43657 -12.22991 -12.08284 -11.82449 -11.79564 -11.73650 -11.38631 -11.12997 -11.10152 -10.87207 -10.78120 -10.54767 -10.49841 -10.48064 -10.32153 -9.85094 -9.57407 -9.09551 -8.68614 -8.51924 -8.39785 -8.19761 -7.79743 -5.96127 -3.91423 2.10648 2.16492 3.42879 3.48323 3.52153 3.53391 3.67785 4.54024 4.58972 4.73514 4.83131 4.95753 5.20798 5.26755 5.33656 5.39109 5.52863 5.57172 5.61693 5.64484 5.67764 5.70929 5.74680 5.89098 5.94919 5.97103 5.99481 6.05460 6.08724 6.09815 6.15778 6.22645 6.25595 6.25871 6.35194 6.61438 6.63823 6.71954 6.78635 6.84627 7.06020 7.11514 7.15596 7.28315 7.61566 7.73817 7.84707 8.15902 8.56056 9.03309 9.11006 9.68584 11.17084 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.016478 B = 0.004125 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.809739 B = 6786.071323 C = 7685.050705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.119 4.119 4 C 0.177 3.823 5 C -0.165 4.165 6 C -0.164 4.164 7 N -0.742 5.742 8 C 0.516 3.484 9 O -0.497 6.497 10 C -0.116 4.116 11 C 0.049 3.951 12 H 0.053 0.947 13 C -0.479 4.479 14 H 0.071 0.929 15 C 0.084 3.916 16 N -0.900 5.900 17 Si 0.867 3.133 18 H -0.276 1.276 19 H -0.261 1.261 20 H -0.293 1.293 21 C -0.039 4.039 22 C -0.101 4.101 23 C -0.127 4.127 24 C -0.150 4.150 25 C -0.125 4.125 26 C -0.139 4.139 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.048 0.952 38 H 0.058 0.942 39 H 0.080 0.920 40 H 0.391 0.609 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.261 0.739 44 H 0.119 0.881 45 H 0.110 0.890 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.940 1.793 6.744 16.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.157 4.157 4 C 0.091 3.909 5 C -0.223 4.223 6 C -0.222 4.222 7 N -0.397 5.397 8 C 0.303 3.697 9 O -0.369 6.369 10 C -0.157 4.157 11 C 0.029 3.971 12 H 0.071 0.929 13 C -0.516 4.516 14 H 0.089 0.911 15 C -0.118 4.118 16 N -0.538 5.538 17 Si 0.695 3.305 18 H -0.201 1.201 19 H -0.186 1.186 20 H -0.219 1.219 21 C -0.039 4.039 22 C -0.119 4.119 23 C -0.145 4.145 24 C -0.168 4.168 25 C -0.143 4.143 26 C -0.157 4.157 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.224 0.776 41 H 0.085 0.915 42 H 0.101 0.899 43 H 0.071 0.929 44 H 0.137 0.863 45 H 0.128 0.872 46 H 0.126 0.874 47 H 0.126 0.874 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -14.160 0.997 6.646 15.674 hybrid contribution 0.408 0.230 0.645 0.797 sum -13.753 1.227 7.290 15.614 Atomic orbital electron populations 1.21775 0.96020 1.01450 1.01646 1.21619 0.95466 0.96471 1.02743 1.21837 0.94102 0.97636 1.02138 1.20157 0.92341 0.82576 0.95855 1.22274 1.04645 0.99148 0.96240 1.22266 1.04134 0.99442 0.96352 1.46292 1.07556 1.07177 1.78691 1.20723 0.81146 0.92350 0.75506 1.90668 1.54754 1.45778 1.45666 1.21626 0.99455 0.92800 1.01793 1.18235 0.89808 0.88797 1.00222 0.92868 1.20579 1.02621 1.34626 0.93803 0.91114 1.24850 0.96994 0.94542 0.95392 1.69887 1.18497 1.40684 1.24695 0.86968 0.79980 0.77829 0.85698 1.20138 1.18600 1.21906 1.20793 0.94595 0.96875 0.91682 1.20952 1.00285 0.92207 0.98459 1.21059 0.99114 0.96569 0.97728 1.20857 1.01372 0.98781 0.95805 1.20955 1.00514 0.93896 0.98898 1.21059 1.00320 0.95775 0.98594 0.92866 0.92916 0.92829 0.91351 0.91496 0.91734 0.91589 0.89594 0.92495 0.93070 0.93280 0.92300 0.90095 0.77645 0.91496 0.89925 0.92897 0.86254 0.87178 0.87412 0.87369 0.87416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.15 0.37 -0.79 16 2 C -0.13 -1.14 5.23 -26.73 -0.14 -1.28 16 3 C -0.12 -1.20 4.38 -26.73 -0.12 -1.31 16 4 C 0.18 2.37 0.83 -131.82 -0.11 2.26 16 5 C -0.17 -2.51 8.05 37.16 0.30 -2.21 16 6 C -0.16 -2.29 8.05 37.15 0.30 -1.99 16 7 N -0.74 -10.74 5.11 -47.61 -0.24 -10.99 16 8 C 0.52 9.82 7.00 -10.98 -0.08 9.74 16 9 O -0.50 -11.63 11.19 5.56 0.06 -11.57 16 10 C -0.12 -2.15 4.93 -27.88 -0.14 -2.29 16 11 C 0.05 1.11 1.21 -92.92 -0.11 1.00 16 12 H 0.05 1.31 4.88 -51.93 -0.25 1.06 16 13 C -0.48 -13.13 6.97 -34.44 -0.24 -13.37 16 14 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 15 C 0.08 2.48 5.47 -17.82 -0.10 2.38 16 16 N -0.90 -28.13 13.96 55.43 0.77 -27.35 16 17 Si 0.87 22.80 26.62 -169.99 -4.52 18.28 16 18 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.26 -6.70 6.29 56.52 0.36 -6.34 16 20 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 21 C -0.04 -0.82 4.52 -104.62 -0.47 -1.29 16 22 C -0.10 -1.98 8.86 -39.58 -0.35 -2.33 16 23 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16 24 C -0.15 -2.48 10.05 -39.58 -0.40 -2.88 16 25 C -0.12 -2.18 10.05 -39.58 -0.40 -2.58 16 26 C -0.14 -2.78 9.08 -39.58 -0.36 -3.14 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.65 6.43 -51.93 -0.33 0.31 16 31 H 0.07 0.61 6.43 -51.93 -0.33 0.28 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 1.68 6.17 -51.93 -0.32 1.36 16 35 H 0.06 0.74 6.43 -51.93 -0.33 0.41 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.71 6.43 -51.93 -0.33 0.38 16 39 H 0.08 1.43 6.17 -51.93 -0.32 1.11 16 40 H 0.39 4.45 8.47 -40.82 -0.35 4.11 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.08 1.43 7.69 -51.93 -0.40 1.03 16 43 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 44 H 0.12 2.30 7.72 -52.49 -0.41 1.89 16 45 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 46 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 47 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 48 H 0.11 2.10 7.91 -52.49 -0.42 1.69 16 LS Contribution 372.41 15.07 5.61 5.61 Total: -1.00 -32.69 372.41 -8.81 -41.50 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -8.05 Total: 7.21 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -2.44 Total: -22.69 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.53 Total: -38.34 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.06 Total: -11.57 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -4.52 Total: 18.28 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.69 -8.81 -41.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355480518.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.367 kcal (2) G-P(sol) polarization free energy of solvation -32.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds