Wall clock time and date at job start Tue Mar 31 2020 08:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47392 * 2 1 4 4 C 1.53000 * 109.46799 * 59.99925 * 3 2 1 5 5 C 1.53005 * 109.46840 * 300.00283 * 3 2 1 6 6 C 1.52995 * 109.47356 * 180.02562 * 3 2 1 7 7 N 1.46506 * 109.47121 * 179.97438 * 6 3 2 8 8 C 1.34769 * 119.99929 * 179.97438 * 7 6 3 9 9 O 1.21284 * 120.00091 * 0.02562 * 8 7 6 10 10 C 1.50703 * 120.00156 * 179.97438 * 8 7 6 11 11 C 1.52995 * 109.47348 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.47385 * 53.81101 * 11 10 8 13 13 C 1.50707 * 109.46800 * 293.80633 * 11 10 8 14 14 H 1.07996 * 119.99939 * 324.79144 * 13 11 10 15 15 C 1.37876 * 119.99516 * 144.79724 * 13 11 10 16 16 N 1.31517 * 119.99498 * 181.40280 * 15 13 11 17 17 Si 1.86799 * 120.00347 * 1.40222 * 15 13 11 18 18 H 1.48496 * 109.47059 * 267.09616 * 17 15 13 19 19 H 1.48498 * 109.46945 * 27.10055 * 17 15 13 20 20 H 1.48502 * 109.46861 * 147.09689 * 17 15 13 21 21 C 1.50699 * 109.46966 * 173.80920 * 11 10 8 22 22 C 1.38237 * 120.00135 * 66.64777 * 21 11 10 23 23 C 1.38237 * 120.00124 * 179.80917 * 22 21 11 24 24 C 1.38241 * 119.99834 * 0.39586 * 23 22 21 25 25 C 1.38239 * 119.99727 * 359.85702 * 24 23 22 26 26 C 1.38229 * 120.00171 * 359.95425 * 25 24 23 27 27 H 1.08999 * 109.46786 * 299.99680 * 1 2 3 28 28 H 1.08996 * 109.47167 * 59.99957 * 1 2 3 29 29 H 1.09005 * 109.46957 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46991 * 239.99882 * 2 1 3 31 31 H 1.09002 * 109.47337 * 120.00418 * 2 1 3 32 32 H 1.09005 * 109.46808 * 180.02562 * 4 3 2 33 33 H 1.09001 * 109.47337 * 299.99986 * 4 3 2 34 34 H 1.08996 * 109.47164 * 60.00321 * 4 3 2 35 35 H 1.08999 * 109.47461 * 299.99755 * 5 3 2 36 36 H 1.09001 * 109.47459 * 59.99915 * 5 3 2 37 37 H 1.09005 * 109.46838 * 179.97438 * 5 3 2 38 38 H 1.08999 * 109.47126 * 60.00134 * 6 3 2 39 39 H 1.09003 * 109.46688 * 299.99513 * 6 3 2 40 40 H 0.97005 * 119.99423 * 0.02562 * 7 6 3 41 41 H 1.09004 * 109.46561 * 60.00018 * 10 8 7 42 42 H 1.09003 * 109.46933 * 300.01124 * 10 8 7 43 43 H 0.96996 * 119.99967 * 179.97438 * 16 15 13 44 44 H 1.07999 * 120.00352 * 359.97438 * 22 21 11 45 45 H 1.07995 * 120.00255 * 180.23001 * 23 22 21 46 46 H 1.07995 * 119.99860 * 179.82910 * 24 23 22 47 47 H 1.08003 * 119.99758 * 179.97438 * 25 24 23 48 48 H 1.08004 * 119.99873 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 6 1.5299 2.1637 -1.2493 6 6 3.5700 1.4425 -0.0006 7 7 4.0583 2.8237 -0.0013 8 6 5.3833 3.0700 -0.0014 9 8 6.1715 2.1481 -0.0014 10 6 5.8858 4.4908 -0.0026 11 6 7.4157 4.4908 -0.0031 12 1 7.7788 3.8834 -0.8321 13 6 7.9184 3.9182 1.2971 14 1 7.3782 4.1039 2.2137 15 6 9.0681 3.1574 1.3165 16 7 9.4917 2.6347 2.4466 17 14 10.0240 2.8689 -0.2622 18 1 9.5681 1.6041 -0.8928 19 1 9.7906 3.9998 -1.1958 20 1 11.4733 2.7734 0.0471 21 6 7.9180 5.9032 -0.1575 22 6 7.7013 6.8276 0.8472 23 6 8.1655 8.1222 0.7072 24 6 8.8392 8.4945 -0.4410 25 6 9.0512 7.5715 -1.4480 26 6 8.5905 6.2759 -1.3063 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.8930 3.1915 1.2490 33 1 0.4400 2.1637 1.2493 34 1 1.8933 1.6499 2.1392 35 1 1.8932 1.6500 -2.1393 36 1 0.4399 2.1638 -1.2493 37 1 1.8930 3.1916 -1.2490 38 1 3.9329 0.9288 -0.8909 39 1 3.9336 0.9286 0.8892 40 1 3.4279 3.5610 -0.0008 41 1 5.5223 5.0054 0.8870 42 1 5.5223 5.0039 -0.8930 43 1 10.3002 2.0991 2.4602 44 1 7.1717 6.5378 1.7427 45 1 7.9995 8.8434 1.4937 46 1 9.1994 9.5066 -0.5516 47 1 9.5772 7.8625 -2.3453 48 1 8.7565 5.5547 -2.0929 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357135242.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:51 Heat of formation + Delta-G solvation = -57.164205 kcal Electronic energy + Delta-G solvation = -25105.211957 eV Core-core repulsion = 21737.184125 eV Total energy + Delta-G solvation = -3368.027833 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.91697 -39.95597 -38.87045 -35.88693 -34.83823 -33.70205 -31.59672 -31.17897 -30.30620 -28.36930 -28.16722 -27.07127 -24.60632 -23.72319 -23.23164 -21.62401 -20.85194 -19.55041 -19.00372 -18.07653 -17.29607 -16.83589 -16.51328 -16.26134 -15.89934 -15.57117 -15.47889 -15.33862 -14.89028 -14.68547 -14.53634 -14.24583 -14.13437 -13.85655 -13.61920 -13.30288 -13.09337 -12.99845 -12.84687 -12.80518 -12.67121 -12.59879 -12.06423 -12.01004 -11.89707 -11.78266 -11.55098 -11.48323 -11.40098 -11.36311 -11.04266 -10.71299 -10.49313 -9.91290 -9.60142 -9.28756 -8.21714 -6.18445 0.69621 0.74484 1.31596 1.36894 1.42056 1.95329 2.41285 2.42468 3.09732 3.25034 3.71305 3.85296 3.89098 4.11776 4.15439 4.31503 4.33248 4.38667 4.41200 4.46730 4.50234 4.62610 4.65113 4.72780 4.76483 4.78173 4.86829 4.88070 4.88852 5.06119 5.07672 5.12341 5.15869 5.18486 5.21257 5.24914 5.30152 5.39572 5.42357 5.53458 5.59476 5.64711 5.70449 5.78248 5.84302 6.04288 6.34288 6.37737 6.77557 6.81055 7.45951 7.57668 8.95482 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.015519 B = 0.003908 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.774984 B = 7162.494142 C = 8161.974805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.066 4.066 4 C -0.143 4.143 5 C -0.141 4.141 6 C 0.131 3.869 7 N -0.722 5.722 8 C 0.507 3.493 9 O -0.566 6.566 10 C -0.112 4.112 11 C 0.057 3.943 12 H 0.032 0.968 13 C -0.464 4.464 14 H 0.033 0.967 15 C 0.022 3.978 16 N -0.955 5.955 17 Si 0.919 3.081 18 H -0.292 1.292 19 H -0.222 1.222 20 H -0.297 1.297 21 C -0.063 4.063 22 C -0.118 4.118 23 C -0.126 4.126 24 C -0.140 4.140 25 C -0.125 4.125 26 C -0.151 4.151 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.044 0.956 35 H 0.051 0.949 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.036 0.964 40 H 0.410 0.590 41 H 0.094 0.906 42 H 0.105 0.895 43 H 0.257 0.743 44 H 0.108 0.892 45 H 0.138 0.862 46 H 0.146 0.854 47 H 0.140 0.860 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.963 6.251 -8.977 21.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.067 4.067 4 C -0.201 4.201 5 C -0.198 4.198 6 C 0.007 3.993 7 N -0.377 5.377 8 C 0.295 3.705 9 O -0.443 6.443 10 C -0.152 4.152 11 C 0.038 3.962 12 H 0.050 0.950 13 C -0.501 4.501 14 H 0.052 0.948 15 C -0.174 4.174 16 N -0.597 5.597 17 Si 0.746 3.254 18 H -0.219 1.219 19 H -0.145 1.145 20 H -0.224 1.224 21 C -0.064 4.064 22 C -0.137 4.137 23 C -0.144 4.144 24 C -0.158 4.158 25 C -0.143 4.143 26 C -0.170 4.170 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.248 0.752 41 H 0.113 0.887 42 H 0.123 0.877 43 H 0.066 0.934 44 H 0.126 0.874 45 H 0.156 0.844 46 H 0.164 0.836 47 H 0.158 0.842 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -17.271 5.492 -8.910 20.195 hybrid contribution 0.863 -0.780 0.058 1.165 sum -16.408 4.712 -8.853 19.230 Atomic orbital electron populations 1.21841 0.93978 1.02105 1.02688 1.21517 0.97435 0.94386 1.01859 1.20749 0.91216 0.97245 0.97463 1.21941 1.02171 1.00007 0.95940 1.21924 1.02138 1.00036 0.95700 1.21323 0.94733 0.83120 1.00138 1.45937 1.06322 1.08998 1.76485 1.21092 0.82201 0.92318 0.74894 1.90723 1.56557 1.47823 1.49214 1.21592 0.97058 0.92428 1.04127 1.18002 0.92181 0.89867 0.96155 0.95000 1.20821 1.07836 1.28721 0.92767 0.94824 1.25620 0.98592 0.95069 0.98091 1.70034 1.24654 1.36883 1.28125 0.86166 0.76897 0.79716 0.82614 1.21923 1.14502 1.22357 1.20485 0.96735 0.95713 0.93438 1.21012 1.01044 0.93514 0.98084 1.21396 0.98539 0.95852 0.98596 1.21337 1.00180 1.00392 0.93841 1.21336 0.99991 0.92826 1.00101 1.21258 1.00822 0.97149 0.97729 0.91910 0.91513 0.92426 0.92042 0.92664 0.92416 0.90130 0.93702 0.92940 0.90272 0.92247 0.93303 0.94504 0.75194 0.88731 0.87652 0.93407 0.87370 0.84369 0.83591 0.84206 0.87203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.21 71.98 0.66 -1.25 16 2 C -0.11 -1.98 4.99 30.59 0.15 -1.82 16 3 C -0.07 -1.25 0.56 -52.18 -0.03 -1.28 16 4 C -0.14 -2.48 7.95 71.98 0.57 -1.91 16 5 C -0.14 -2.14 7.95 71.98 0.57 -1.57 16 6 C 0.13 3.70 4.56 86.38 0.39 4.10 16 7 N -0.72 -21.22 4.96 -463.06 -2.30 -23.51 16 8 C 0.51 20.46 7.58 87.66 0.66 21.12 16 9 O -0.57 -29.75 15.02 -3.04 -0.05 -29.79 16 10 C -0.11 -4.15 4.96 29.85 0.15 -4.01 16 11 C 0.06 2.66 1.17 -12.29 -0.01 2.64 16 12 H 0.03 1.58 4.94 -2.39 -0.01 1.57 16 13 C -0.46 -26.72 6.88 25.60 0.18 -26.54 16 14 H 0.03 2.13 8.06 -2.91 -0.02 2.10 16 15 C 0.02 1.37 5.47 84.65 0.46 1.84 16 16 N -0.96 -63.69 13.96 21.45 0.30 -63.39 16 17 Si 0.92 48.83 27.00 68.60 1.85 50.68 16 18 H -0.29 -16.12 7.11 99.48 0.71 -15.41 16 19 H -0.22 -10.46 4.72 99.48 0.47 -9.99 16 20 H -0.30 -15.62 7.11 99.48 0.71 -14.91 16 21 C -0.06 -2.59 4.65 -19.87 -0.09 -2.68 16 22 C -0.12 -4.48 8.93 22.27 0.20 -4.29 16 23 C -0.13 -3.88 10.05 22.27 0.22 -3.66 16 24 C -0.14 -3.88 10.05 22.27 0.22 -3.66 16 25 C -0.12 -3.75 10.05 22.27 0.22 -3.53 16 26 C -0.15 -5.59 8.70 22.27 0.19 -5.39 16 27 H 0.06 0.75 6.43 -2.39 -0.02 0.73 16 28 H 0.07 0.74 6.43 -2.39 -0.02 0.72 16 29 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 0.97 6.86 -2.38 -0.02 0.96 16 33 H 0.08 1.06 6.43 -2.39 -0.02 1.05 16 34 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.08 0.92 6.43 -2.39 -0.02 0.90 16 37 H 0.06 0.86 6.86 -2.38 -0.02 0.85 16 38 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.41 8.97 6.16 -92.70 -0.57 8.40 16 41 H 0.09 3.28 8.05 -2.38 -0.02 3.26 16 42 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 43 H 0.26 16.39 8.31 -92.71 -0.77 15.61 16 44 H 0.11 4.24 7.87 -2.91 -0.02 4.22 16 45 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 46 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 47 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 48 H 0.11 4.00 7.12 -2.91 -0.02 3.98 16 Total: -1.00 -78.63 372.84 4.67 -73.97 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: 0.12 Total: 23.94 kcal Atomic # 6 Polarization: -36.62 SS G_CDS: 4.73 Total: -31.88 kcal Atomic # 7 Polarization: -84.91 SS G_CDS: -2.00 Total: -86.91 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.05 Total: -29.79 kcal Atomic # 14 Polarization: 48.83 SS G_CDS: 1.85 Total: 50.68 kcal Total: -78.63 4.67 -73.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357135242.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.802 kcal (2) G-P(sol) polarization free energy of solvation -78.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds