Wall clock time and date at job start Tue Mar 31 2020 08:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47154 * 60.00571 * 3 2 1 5 5 C 1.53001 * 109.47198 * 300.00169 * 3 2 1 6 6 C 1.53005 * 109.46912 * 180.02562 * 3 2 1 7 7 N 1.46502 * 109.46864 * 179.97438 * 6 3 2 8 8 C 1.34777 * 119.99559 * 179.97438 * 7 6 3 9 9 O 1.21283 * 120.00046 * 0.02562 * 8 7 6 10 10 C 1.50698 * 119.99686 * 180.02562 * 8 7 6 11 11 C 1.53005 * 109.46990 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.46934 * 305.97546 * 11 10 8 13 13 C 1.50700 * 109.47299 * 65.97885 * 11 10 8 14 14 H 1.08008 * 119.99531 * 26.90748 * 13 11 10 15 15 C 1.37869 * 120.00160 * 206.90965 * 13 11 10 16 16 N 1.31508 * 120.00032 * 353.27812 * 15 13 11 17 17 Si 1.86806 * 120.00073 * 173.54969 * 15 13 11 18 18 H 1.48497 * 109.46895 * 179.72442 * 17 15 13 19 19 H 1.48495 * 109.46957 * 299.72695 * 17 15 13 20 20 H 1.48501 * 109.46761 * 59.72686 * 17 15 13 21 21 C 1.50705 * 109.47056 * 185.97689 * 11 10 8 22 22 C 1.38237 * 120.00118 * 294.44966 * 21 11 10 23 23 C 1.38237 * 119.99818 * 179.78603 * 22 21 11 24 24 C 1.38236 * 120.00003 * 0.44191 * 23 22 21 25 25 C 1.38236 * 119.99991 * 359.81061 * 24 23 22 26 26 C 1.38228 * 119.99825 * 114.71859 * 21 11 10 27 27 H 1.09000 * 109.47671 * 59.99462 * 1 2 3 28 28 H 1.09002 * 109.47140 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46805 * 299.99546 * 1 2 3 30 30 H 1.09008 * 109.46813 * 240.00591 * 2 1 3 31 31 H 1.08990 * 109.47175 * 120.00508 * 2 1 3 32 32 H 1.09002 * 109.47001 * 179.97438 * 4 3 2 33 33 H 1.09005 * 109.46851 * 299.99439 * 4 3 2 34 34 H 1.08995 * 109.47576 * 59.99352 * 4 3 2 35 35 H 1.08998 * 109.47475 * 300.00075 * 5 3 2 36 36 H 1.08996 * 109.47383 * 60.00507 * 5 3 2 37 37 H 1.09002 * 109.47213 * 180.02562 * 5 3 2 38 38 H 1.08998 * 109.47146 * 60.00301 * 6 3 2 39 39 H 1.08995 * 109.46642 * 299.99928 * 6 3 2 40 40 H 0.97002 * 120.00062 * 0.02562 * 7 6 3 41 41 H 1.09000 * 109.47229 * 60.00363 * 10 8 7 42 42 H 1.09003 * 109.47630 * 300.00294 * 10 8 7 43 43 H 0.97008 * 120.00303 * 354.69126 * 16 15 13 44 44 H 1.08005 * 119.99967 * 359.97438 * 22 21 11 45 45 H 1.07999 * 119.99448 * 180.27078 * 23 22 21 46 46 H 1.07997 * 119.99991 * 179.83259 * 24 23 22 47 47 H 1.07993 * 119.99965 * 180.02562 * 25 24 23 48 48 H 1.07999 * 120.00249 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1637 1.2493 5 6 1.5299 2.1638 -1.2492 6 6 3.5700 1.4425 -0.0006 7 7 4.0583 2.8237 -0.0013 8 6 5.3834 3.0699 -0.0014 9 8 6.1715 2.1481 -0.0014 10 6 5.8857 4.4907 -0.0014 11 6 7.4158 4.4907 -0.0022 12 1 7.7795 3.8869 0.8292 13 6 7.9175 3.9125 -1.3003 14 1 7.3106 3.9789 -2.1913 15 6 9.1511 3.2988 -1.3505 16 7 9.9458 3.3333 -0.3033 17 14 9.6968 2.4248 -2.9087 18 1 11.0545 1.8576 -2.7084 19 1 8.7439 1.3297 -3.2215 20 1 9.7258 3.3926 -4.0347 21 6 7.9182 5.9038 0.1457 22 6 7.6810 6.8298 -0.8529 23 6 8.1380 8.1272 -0.7152 24 6 8.8402 8.4961 0.4170 25 6 9.0820 7.5687 1.4132 26 6 8.6211 6.2725 1.2774 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8898 32 1 1.8938 3.1912 1.2495 33 1 0.4401 2.1637 1.2493 34 1 1.8934 1.6499 2.1392 35 1 1.8932 1.6500 -2.1392 36 1 0.4400 2.1639 -1.2492 37 1 1.8936 3.1913 -1.2495 38 1 3.9330 0.9288 -0.8909 39 1 3.9336 0.9285 0.8891 40 1 3.4280 3.5610 -0.0008 41 1 5.5225 5.0046 0.8886 42 1 5.5223 5.0047 -0.8914 43 1 9.6983 3.8546 0.4766 44 1 7.1359 6.5405 -1.7392 45 1 7.9488 8.8517 -1.4934 46 1 9.1996 9.5090 0.5233 47 1 9.6302 7.8571 2.2978 48 1 8.8099 5.5480 2.0558 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357135251.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:55 Heat of formation + Delta-G solvation = -42.847996 kcal Electronic energy + Delta-G solvation = -25075.708956 eV Core-core repulsion = 21708.301921 eV Total energy + Delta-G solvation = -3367.407035 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.49711 -38.53883 -37.66359 -34.32163 -33.47788 -31.31628 -30.21526 -30.09622 -28.93653 -27.45407 -26.77922 -24.93010 -23.37694 -22.54468 -21.64321 -20.19519 -19.52352 -18.69882 -16.95786 -16.39253 -15.91996 -15.43199 -15.21463 -14.79447 -14.67739 -14.30217 -14.06546 -13.68113 -13.65377 -13.57471 -12.97957 -12.79998 -12.47910 -12.37670 -12.27331 -12.12682 -12.04997 -11.84993 -11.80808 -11.43078 -11.28935 -10.88686 -10.73775 -10.69449 -10.65721 -10.57947 -10.41862 -10.10169 -10.01774 -9.65771 -8.98558 -8.60454 -8.50777 -8.24966 -8.12880 -7.62168 -6.19577 -3.88170 2.20064 2.25791 3.50926 3.54434 3.57663 3.72776 3.73784 4.57590 4.62394 4.65274 4.65668 4.70210 5.09525 5.18424 5.28420 5.41063 5.47002 5.50816 5.60465 5.62463 5.64588 5.68798 5.73740 5.77477 5.79094 5.84393 5.89175 5.95543 6.00188 6.03587 6.06154 6.11666 6.18804 6.27476 6.29390 6.32986 6.43909 6.71293 6.80519 6.94425 6.95851 7.22481 7.24480 7.39758 7.75078 7.87119 8.09483 8.26026 8.54500 8.99660 9.08605 9.80570 11.19972 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.013811 B = 0.003940 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.898057 B = 7105.444532 C = 8416.809301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.112 4.112 3 C -0.076 4.076 4 C -0.143 4.143 5 C -0.143 4.143 6 C 0.132 3.868 7 N -0.747 5.747 8 C 0.511 3.489 9 O -0.500 6.500 10 C -0.116 4.116 11 C 0.073 3.927 12 H 0.049 0.951 13 C -0.566 4.566 14 H 0.044 0.956 15 C 0.032 3.968 16 N -0.907 5.907 17 Si 1.060 2.940 18 H -0.284 1.284 19 H -0.289 1.289 20 H -0.291 1.291 21 C -0.032 4.032 22 C -0.107 4.107 23 C -0.130 4.130 24 C -0.153 4.153 25 C -0.125 4.125 26 C -0.130 4.130 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.391 0.609 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.271 0.729 44 H 0.115 0.885 45 H 0.107 0.893 46 H 0.106 0.894 47 H 0.107 0.893 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.329 1.624 1.937 17.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.077 4.077 4 C -0.200 4.200 5 C -0.201 4.201 6 C 0.008 3.992 7 N -0.403 5.403 8 C 0.298 3.702 9 O -0.372 6.372 10 C -0.157 4.157 11 C 0.054 3.946 12 H 0.067 0.933 13 C -0.603 4.603 14 H 0.063 0.937 15 C -0.173 4.173 16 N -0.542 5.542 17 Si 0.889 3.111 18 H -0.209 1.209 19 H -0.215 1.215 20 H -0.217 1.217 21 C -0.033 4.033 22 C -0.125 4.125 23 C -0.148 4.148 24 C -0.171 4.171 25 C -0.143 4.143 26 C -0.149 4.149 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.133 0.867 45 H 0.125 0.875 46 H 0.124 0.876 47 H 0.125 0.875 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -15.477 -0.007 1.289 15.530 hybrid contribution -1.422 1.332 0.522 2.017 sum -16.899 1.325 1.811 17.047 Atomic orbital electron populations 1.21873 0.95790 1.01429 1.02015 1.21502 0.95931 0.95186 1.02402 1.20807 0.94531 0.96152 0.96181 1.21923 1.00855 1.00298 0.96941 1.21926 1.00804 1.00353 0.96979 1.21229 0.91731 0.84314 1.01899 1.46215 1.07580 1.07642 1.78878 1.20837 0.81056 0.92572 0.75753 1.90747 1.54628 1.46119 1.45701 1.21656 1.00289 0.92362 1.01356 1.17861 0.88342 0.88324 1.00108 0.93266 1.21521 1.04873 1.40034 0.93911 0.93730 1.25562 0.93357 0.95805 1.02615 1.70730 1.38568 1.39387 1.05522 0.83691 0.76206 0.76407 0.74799 1.20942 1.21539 1.21744 1.20863 0.94213 0.96869 0.91353 1.20929 1.00560 0.92330 0.98656 1.21015 0.99783 0.96527 0.97513 1.20822 1.02111 0.98747 0.95401 1.20964 1.00612 0.94029 0.98686 1.21077 1.00017 0.95520 0.98246 0.92431 0.92969 0.92474 0.91677 0.91738 0.92595 0.92295 0.92501 0.92405 0.92315 0.92565 0.91962 0.92143 0.77473 0.91772 0.90381 0.91801 0.86696 0.87463 0.87593 0.87459 0.87164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.21 37.16 0.34 -0.80 16 2 C -0.11 -1.00 4.99 -26.73 -0.13 -1.13 16 3 C -0.08 -0.75 0.56 -154.51 -0.09 -0.84 16 4 C -0.14 -1.27 7.95 37.16 0.30 -0.98 16 5 C -0.14 -1.32 7.95 37.16 0.30 -1.03 16 6 C 0.13 1.82 4.56 -4.04 -0.02 1.80 16 7 N -0.75 -11.18 4.96 -60.29 -0.30 -11.48 16 8 C 0.51 10.34 7.58 -10.99 -0.08 10.26 16 9 O -0.50 -12.76 15.02 5.55 0.08 -12.68 16 10 C -0.12 -2.29 4.95 -27.88 -0.14 -2.42 16 11 C 0.07 1.76 1.23 -92.92 -0.11 1.65 16 12 H 0.05 1.35 6.59 -51.93 -0.34 1.01 16 13 C -0.57 -15.57 6.35 -34.44 -0.22 -15.79 16 14 H 0.04 1.23 7.82 -52.48 -0.41 0.82 16 15 C 0.03 0.94 5.45 -17.83 -0.10 0.84 16 16 N -0.91 -28.01 13.56 55.43 0.75 -27.26 16 17 Si 1.06 26.57 29.91 -169.99 -5.08 21.48 16 18 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 21 C -0.03 -0.72 4.53 -104.62 -0.47 -1.20 16 22 C -0.11 -2.20 8.90 -39.58 -0.35 -2.55 16 23 C -0.13 -2.37 10.05 -39.58 -0.40 -2.76 16 24 C -0.15 -2.67 10.05 -39.58 -0.40 -3.07 16 25 C -0.12 -2.31 10.05 -39.58 -0.40 -2.71 16 26 C -0.13 -2.75 9.18 -39.58 -0.36 -3.11 16 27 H 0.06 0.41 6.43 -51.93 -0.33 0.08 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 30 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.50 6.86 -51.93 -0.36 0.14 16 33 H 0.06 0.45 6.43 -51.93 -0.33 0.11 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 37 H 0.06 0.52 6.86 -51.93 -0.36 0.17 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.39 4.71 6.16 -40.82 -0.25 4.46 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.08 1.43 7.96 -51.93 -0.41 1.02 16 43 H 0.27 8.23 6.24 -40.82 -0.25 7.97 16 44 H 0.12 2.32 7.85 -52.48 -0.41 1.91 16 45 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 46 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 47 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 48 H 0.11 2.30 7.95 -52.49 -0.42 1.88 16 LS Contribution 377.62 15.07 5.69 5.69 Total: -1.00 -33.30 377.62 -9.19 -42.49 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -8.00 Total: 5.61 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: -2.34 Total: -23.85 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.45 Total: -38.74 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.08 Total: -12.68 kcal Atomic # 14 Polarization: 26.57 SS G_CDS: -5.08 Total: 21.48 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.30 -9.19 -42.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357135251.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.357 kcal (2) G-P(sol) polarization free energy of solvation -33.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds