Wall clock time and date at job start Tue Mar 31 2020 08:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47154 * 60.00571 * 3 2 1 5 5 C 1.53001 * 109.47198 * 300.00169 * 3 2 1 6 6 C 1.53005 * 109.46912 * 180.02562 * 3 2 1 7 7 N 1.46502 * 109.46864 * 179.97438 * 6 3 2 8 8 C 1.34777 * 119.99559 * 179.97438 * 7 6 3 9 9 O 1.21283 * 120.00046 * 0.02562 * 8 7 6 10 10 C 1.50698 * 119.99686 * 180.02562 * 8 7 6 11 11 C 1.53005 * 109.46990 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.46934 * 305.97546 * 11 10 8 13 13 C 1.50700 * 109.47299 * 65.97885 * 11 10 8 14 14 H 1.08008 * 119.99531 * 26.90748 * 13 11 10 15 15 C 1.37869 * 120.00160 * 206.90965 * 13 11 10 16 16 N 1.31508 * 120.00032 * 353.27812 * 15 13 11 17 17 Si 1.86806 * 120.00073 * 173.54969 * 15 13 11 18 18 H 1.48497 * 109.46895 * 179.72442 * 17 15 13 19 19 H 1.48495 * 109.46957 * 299.72695 * 17 15 13 20 20 H 1.48501 * 109.46761 * 59.72686 * 17 15 13 21 21 C 1.50705 * 109.47056 * 185.97689 * 11 10 8 22 22 C 1.38237 * 120.00118 * 294.44966 * 21 11 10 23 23 C 1.38237 * 119.99818 * 179.78603 * 22 21 11 24 24 C 1.38236 * 120.00003 * 0.44191 * 23 22 21 25 25 C 1.38236 * 119.99991 * 359.81061 * 24 23 22 26 26 C 1.38228 * 119.99825 * 114.71859 * 21 11 10 27 27 H 1.09000 * 109.47671 * 59.99462 * 1 2 3 28 28 H 1.09002 * 109.47140 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46805 * 299.99546 * 1 2 3 30 30 H 1.09008 * 109.46813 * 240.00591 * 2 1 3 31 31 H 1.08990 * 109.47175 * 120.00508 * 2 1 3 32 32 H 1.09002 * 109.47001 * 179.97438 * 4 3 2 33 33 H 1.09005 * 109.46851 * 299.99439 * 4 3 2 34 34 H 1.08995 * 109.47576 * 59.99352 * 4 3 2 35 35 H 1.08998 * 109.47475 * 300.00075 * 5 3 2 36 36 H 1.08996 * 109.47383 * 60.00507 * 5 3 2 37 37 H 1.09002 * 109.47213 * 180.02562 * 5 3 2 38 38 H 1.08998 * 109.47146 * 60.00301 * 6 3 2 39 39 H 1.08995 * 109.46642 * 299.99928 * 6 3 2 40 40 H 0.97002 * 120.00062 * 0.02562 * 7 6 3 41 41 H 1.09000 * 109.47229 * 60.00363 * 10 8 7 42 42 H 1.09003 * 109.47630 * 300.00294 * 10 8 7 43 43 H 0.97008 * 120.00303 * 354.69126 * 16 15 13 44 44 H 1.08005 * 119.99967 * 359.97438 * 22 21 11 45 45 H 1.07999 * 119.99448 * 180.27078 * 23 22 21 46 46 H 1.07997 * 119.99991 * 179.83259 * 24 23 22 47 47 H 1.07993 * 119.99965 * 180.02562 * 25 24 23 48 48 H 1.07999 * 120.00249 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1637 1.2493 5 6 1.5299 2.1638 -1.2492 6 6 3.5700 1.4425 -0.0006 7 7 4.0583 2.8237 -0.0013 8 6 5.3834 3.0699 -0.0014 9 8 6.1715 2.1481 -0.0014 10 6 5.8857 4.4907 -0.0014 11 6 7.4158 4.4907 -0.0022 12 1 7.7795 3.8869 0.8292 13 6 7.9175 3.9125 -1.3003 14 1 7.3106 3.9789 -2.1913 15 6 9.1511 3.2988 -1.3505 16 7 9.9458 3.3333 -0.3033 17 14 9.6968 2.4248 -2.9087 18 1 11.0545 1.8576 -2.7084 19 1 8.7439 1.3297 -3.2215 20 1 9.7258 3.3926 -4.0347 21 6 7.9182 5.9038 0.1457 22 6 7.6810 6.8298 -0.8529 23 6 8.1380 8.1272 -0.7152 24 6 8.8402 8.4961 0.4170 25 6 9.0820 7.5687 1.4132 26 6 8.6211 6.2725 1.2774 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8898 32 1 1.8938 3.1912 1.2495 33 1 0.4401 2.1637 1.2493 34 1 1.8934 1.6499 2.1392 35 1 1.8932 1.6500 -2.1392 36 1 0.4400 2.1639 -1.2492 37 1 1.8936 3.1913 -1.2495 38 1 3.9330 0.9288 -0.8909 39 1 3.9336 0.9285 0.8891 40 1 3.4280 3.5610 -0.0008 41 1 5.5225 5.0046 0.8886 42 1 5.5223 5.0047 -0.8914 43 1 9.6983 3.8546 0.4766 44 1 7.1359 6.5405 -1.7392 45 1 7.9488 8.8517 -1.4934 46 1 9.1996 9.5090 0.5233 47 1 9.6302 7.8571 2.2978 48 1 8.8099 5.5480 2.0558 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357135251.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:54 Heat of formation + Delta-G solvation = -61.720906 kcal Electronic energy + Delta-G solvation = -25076.527347 eV Core-core repulsion = 21708.301921 eV Total energy + Delta-G solvation = -3368.225426 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.95323 -39.98007 -38.89762 -36.13114 -34.87424 -33.27591 -31.61488 -31.18548 -30.32506 -28.19349 -28.01865 -26.66607 -24.85224 -23.79755 -23.17486 -21.77617 -21.15489 -19.62334 -18.82040 -18.01958 -17.31106 -16.88167 -16.52037 -16.03110 -15.78913 -15.66226 -15.51825 -15.46125 -14.88968 -14.75579 -14.37748 -14.28641 -14.05684 -13.93284 -13.46967 -13.24159 -13.06081 -13.01078 -12.82782 -12.70816 -12.63946 -12.58586 -12.08543 -12.02966 -11.96258 -11.75132 -11.57803 -11.49720 -11.41730 -11.38349 -10.76452 -10.57973 -10.35976 -9.95698 -9.64595 -9.27463 -8.44802 -6.11408 0.67342 0.73387 1.46753 1.57345 1.73208 1.89805 2.36723 2.61708 3.10426 3.36165 3.68562 3.82952 3.86976 4.09799 4.13172 4.28138 4.29440 4.36863 4.38816 4.43780 4.48141 4.60640 4.61504 4.70258 4.74333 4.75632 4.82857 4.85765 4.86964 5.03737 5.05709 5.10200 5.14247 5.16913 5.22560 5.23547 5.28278 5.40450 5.42873 5.51300 5.57839 5.61198 5.74238 5.81859 5.94585 6.23886 6.30711 6.40306 6.72132 6.78300 7.53022 7.63855 8.95565 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.013811 B = 0.003940 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.898057 B = 7105.444532 C = 8416.809301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C -0.066 4.066 4 C -0.142 4.142 5 C -0.143 4.143 6 C 0.131 3.869 7 N -0.722 5.722 8 C 0.509 3.491 9 O -0.564 6.564 10 C -0.111 4.111 11 C 0.074 3.926 12 H 0.003 0.997 13 C -0.556 4.556 14 H 0.038 0.962 15 C -0.025 4.025 16 N -0.944 5.944 17 Si 1.096 2.904 18 H -0.288 1.288 19 H -0.287 1.287 20 H -0.265 1.265 21 C -0.056 4.056 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.144 4.144 25 C -0.125 4.125 26 C -0.153 4.153 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.047 0.953 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.042 0.958 39 H 0.045 0.955 40 H 0.410 0.590 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.260 0.740 44 H 0.114 0.886 45 H 0.143 0.857 46 H 0.147 0.853 47 H 0.135 0.865 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.482 4.198 1.219 19.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 C -0.066 4.066 4 C -0.199 4.199 5 C -0.200 4.200 6 C 0.007 3.993 7 N -0.377 5.377 8 C 0.296 3.704 9 O -0.441 6.441 10 C -0.151 4.151 11 C 0.055 3.945 12 H 0.021 0.979 13 C -0.594 4.594 14 H 0.057 0.943 15 C -0.223 4.223 16 N -0.582 5.582 17 Si 0.921 3.079 18 H -0.214 1.214 19 H -0.214 1.214 20 H -0.191 1.191 21 C -0.056 4.056 22 C -0.141 4.141 23 C -0.142 4.142 24 C -0.162 4.162 25 C -0.143 4.143 26 C -0.172 4.172 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.247 0.753 41 H 0.110 0.890 42 H 0.114 0.886 43 H 0.071 0.929 44 H 0.132 0.868 45 H 0.161 0.839 46 H 0.165 0.835 47 H 0.153 0.847 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.709 2.608 0.564 17.909 hybrid contribution -0.841 0.598 0.807 1.310 sum -18.551 3.206 1.371 18.876 Atomic orbital electron populations 1.21844 0.93974 1.02140 1.02675 1.21514 0.97432 0.94268 1.01932 1.20750 0.91134 0.97334 0.97431 1.21930 1.02199 0.99948 0.95835 1.21937 1.02191 0.99954 0.95916 1.21340 0.94792 0.82963 1.00202 1.45951 1.06173 1.09090 1.76492 1.21014 0.82214 0.92163 0.74989 1.90727 1.56597 1.47694 1.49085 1.21564 0.97452 0.92569 1.03472 1.17683 0.91071 0.89037 0.96687 0.97890 1.21783 1.03926 1.38829 0.94879 0.94330 1.26724 0.94314 0.96939 1.04367 1.70812 1.39704 1.41478 1.06240 0.83214 0.75525 0.76161 0.72992 1.21379 1.21390 1.19051 1.20622 0.95876 0.96122 0.93021 1.21012 1.01523 0.93418 0.98104 1.21411 0.98384 0.95874 0.98559 1.21313 1.00406 1.00263 0.94182 1.21302 0.99951 0.92862 1.00165 1.21130 1.01056 0.96907 0.98077 0.91784 0.92364 0.91683 0.92365 0.92185 0.92475 0.90161 0.93134 0.93351 0.90126 0.92517 0.94001 0.93658 0.75269 0.88998 0.88555 0.92921 0.86831 0.83909 0.83501 0.84680 0.88712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.21 71.98 0.66 -1.19 16 2 C -0.11 -1.92 4.99 30.59 0.15 -1.76 16 3 C -0.07 -1.23 0.56 -52.18 -0.03 -1.26 16 4 C -0.14 -2.24 7.95 71.98 0.57 -1.67 16 5 C -0.14 -2.35 7.95 71.98 0.57 -1.78 16 6 C 0.13 3.69 4.56 86.38 0.39 4.08 16 7 N -0.72 -21.59 4.96 -463.05 -2.30 -23.89 16 8 C 0.51 21.20 7.58 87.66 0.66 21.87 16 9 O -0.56 -30.48 15.02 -3.04 -0.05 -30.53 16 10 C -0.11 -4.39 4.95 29.85 0.15 -4.24 16 11 C 0.07 3.76 1.23 -12.28 -0.02 3.74 16 12 H 0.00 0.17 6.59 -2.39 -0.02 0.15 16 13 C -0.56 -31.64 6.35 25.60 0.16 -31.48 16 14 H 0.04 2.18 7.82 -2.91 -0.02 2.15 16 15 C -0.03 -1.52 5.45 84.65 0.46 -1.06 16 16 N -0.94 -61.20 13.56 21.44 0.29 -60.91 16 17 Si 1.10 54.95 29.91 68.60 2.05 57.00 16 18 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 19 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 21 C -0.06 -2.53 4.53 -19.87 -0.09 -2.62 16 22 C -0.12 -4.91 8.90 22.27 0.20 -4.71 16 23 C -0.12 -4.10 10.05 22.27 0.22 -3.87 16 24 C -0.14 -4.47 10.05 22.27 0.22 -4.25 16 25 C -0.12 -4.37 10.05 22.27 0.22 -4.15 16 26 C -0.15 -6.58 9.18 22.27 0.20 -6.38 16 27 H 0.06 0.72 6.43 -2.39 -0.02 0.71 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.72 6.43 -2.39 -0.02 0.70 16 30 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 0.88 6.86 -2.39 -0.02 0.87 16 33 H 0.08 0.96 6.43 -2.38 -0.02 0.95 16 34 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 1.01 6.43 -2.39 -0.02 0.99 16 37 H 0.06 0.92 6.86 -2.39 -0.02 0.91 16 38 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.41 9.26 6.16 -92.71 -0.57 8.69 16 41 H 0.09 3.10 8.14 -2.39 -0.02 3.09 16 42 H 0.10 3.46 7.96 -2.39 -0.02 3.44 16 43 H 0.26 16.86 6.24 -92.70 -0.58 16.28 16 44 H 0.11 4.47 7.85 -2.91 -0.02 4.45 16 45 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 46 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 47 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 48 H 0.09 4.22 7.95 -2.91 -0.02 4.20 16 Total: -1.00 -77.26 377.62 5.28 -71.98 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: 0.55 Total: 27.06 kcal Atomic # 6 Polarization: -45.45 SS G_CDS: 4.73 Total: -40.72 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: -2.01 Total: -84.80 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.05 Total: -30.53 kcal Atomic # 14 Polarization: 54.95 SS G_CDS: 2.05 Total: 57.00 kcal Total: -77.26 5.28 -71.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357135251.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.263 kcal (2) G-P(sol) polarization free energy of solvation -77.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds