Wall clock time and date at job start Tue Mar 31 2020 07:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99948 * 2 1 4 4 C 1.52996 * 108.96566 * 298.90808 * 3 2 1 5 5 C 1.54508 * 109.04091 * 57.82649 * 3 2 1 6 6 C 1.50533 * 108.85629 * 43.30265 * 5 3 2 7 7 C 1.53919 * 112.93300 * 91.76356 * 6 5 3 8 8 N 1.47943 * 113.33003 * 317.75895 * 7 6 5 9 9 C 1.46898 * 111.00130 * 192.17713 * 8 7 6 10 10 C 1.50700 * 109.47178 * 293.95754 * 9 8 7 11 11 C 1.38635 * 119.74619 * 269.72714 * 10 9 8 12 12 C 1.37621 * 120.24706 * 179.71917 * 11 10 9 13 13 C 1.40714 * 119.74493 * 0.52647 * 12 11 10 14 14 C 1.41393 * 120.24232 * 179.72365 * 13 12 11 15 15 H 1.07999 * 119.99678 * 155.31096 * 14 13 12 16 16 C 1.39944 * 120.00380 * 335.30944 * 14 13 12 17 17 N 1.30823 * 120.00067 * 342.23475 * 16 14 13 18 18 Si 1.86794 * 119.99982 * 162.23213 * 16 14 13 19 19 H 1.48498 * 109.47286 * 94.66698 * 18 16 14 20 20 H 1.48510 * 109.47444 * 214.66841 * 18 16 14 21 21 H 1.48500 * 109.47496 * 334.66435 * 18 16 14 22 22 C 1.40713 * 119.51256 * 359.74893 * 13 12 11 23 23 C 1.37624 * 119.74463 * 359.97438 * 22 13 12 24 24 C 1.44397 * 113.55952 * 318.13309 * 8 7 6 25 25 C 1.45880 * 109.03713 * 179.97438 * 3 2 1 26 26 H 1.08996 * 109.46967 * 60.00024 * 1 2 3 27 27 H 1.08996 * 109.47388 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47269 * 299.99747 * 1 2 3 29 29 H 1.09004 * 109.47384 * 301.09421 * 4 3 2 30 30 H 1.09000 * 109.47102 * 61.09093 * 4 3 2 31 31 H 1.08997 * 109.47624 * 181.08618 * 4 3 2 32 32 H 1.08997 * 109.57517 * 163.11991 * 5 3 2 33 33 H 1.09004 * 109.57262 * 283.49590 * 5 3 2 34 34 H 1.09004 * 108.79548 * 212.65334 * 6 5 3 35 35 H 1.09000 * 108.79147 * 330.98177 * 6 5 3 36 36 H 1.08996 * 108.71214 * 78.75388 * 7 6 5 37 37 H 1.09002 * 108.71223 * 196.89157 * 7 6 5 38 38 H 1.08998 * 109.47010 * 53.95447 * 9 8 7 39 39 H 1.08993 * 109.47504 * 173.95362 * 9 8 7 40 40 H 1.08002 * 119.87713 * 359.97438 * 11 10 9 41 41 H 1.08007 * 120.12766 * 180.27724 * 12 11 10 42 42 H 0.96998 * 120.00423 * 179.97438 * 17 16 14 43 43 H 1.07999 * 120.12999 * 180.02562 * 22 13 12 44 44 H 1.07994 * 119.87455 * 180.02562 * 23 22 13 45 45 H 1.09004 * 109.79462 * 335.77228 * 24 8 7 46 46 H 1.09001 * 109.63873 * 215.16276 * 24 8 7 47 47 H 1.09005 * 108.84666 * 61.74335 * 25 3 2 48 48 H 1.08999 * 108.84348 * 180.21393 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5735 2.0442 -1.2666 5 6 1.5047 2.0823 1.2363 6 6 1.5380 1.1685 2.4321 7 6 2.8609 1.2522 3.2143 8 7 4.0549 1.3041 2.3422 9 6 5.2837 1.0929 3.1189 10 6 5.4826 2.2463 4.0681 11 6 6.2105 3.3540 3.6616 12 6 6.3935 4.4156 4.5181 13 6 5.8480 4.3690 5.8143 14 6 6.0347 5.4513 6.7049 15 1 5.3309 5.6181 7.5069 16 6 7.1313 6.3062 6.5471 17 7 8.1557 5.9299 5.8256 18 14 7.1323 7.9848 7.3665 19 1 7.8307 7.8970 8.6740 20 1 7.8346 8.9609 6.4948 21 1 5.7326 8.4315 7.5820 22 6 5.1160 3.2371 6.2180 23 6 4.9406 2.1895 5.3429 24 6 3.9891 0.3989 1.2191 25 6 3.4635 1.1792 0.0006 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8932 1.4817 -2.1439 30 1 0.4879 2.1424 -1.2739 31 1 2.0280 3.0347 -1.2846 32 1 2.1496 2.9424 1.4159 33 1 0.4828 2.4196 1.0628 34 1 0.7181 1.4337 3.0996 35 1 1.3963 0.1421 2.0937 36 1 2.8433 2.1469 3.8365 37 1 2.9405 0.3786 3.8613 38 1 5.2002 0.1659 3.6861 39 1 6.1352 1.0288 2.4415 40 1 6.6319 3.3857 2.6678 41 1 6.9571 5.2795 4.1978 42 1 8.9156 6.5226 5.7159 43 1 4.6926 3.1910 7.2105 44 1 4.3788 1.3200 5.6503 45 1 3.3124 -0.4245 1.4477 46 1 4.9839 0.0087 1.0043 47 1 3.7725 0.6621 -0.9078 48 1 3.9035 2.1765 0.0045 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361423629.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:19 Heat of formation + Delta-G solvation = -28.914885 kcal Electronic energy + Delta-G solvation = -25561.058349 eV Core-core repulsion = 22194.255499 eV Total energy + Delta-G solvation = -3366.802850 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.27213 -37.97013 -36.59673 -34.01178 -33.18147 -32.50096 -30.51238 -29.25931 -28.53610 -26.93521 -26.66167 -25.20512 -23.27048 -22.86476 -20.90638 -20.00807 -19.86670 -19.23842 -17.23950 -16.63455 -15.98614 -15.67350 -15.36903 -15.04542 -14.70493 -14.36709 -13.98104 -13.57134 -13.49827 -13.45257 -12.87636 -12.67983 -12.56336 -12.42725 -12.12117 -11.90412 -11.83968 -11.65680 -11.60078 -11.37860 -11.12485 -11.01259 -10.93881 -10.80224 -10.70115 -10.44494 -10.30981 -10.23586 -10.09314 -9.54429 -9.48542 -9.31845 -9.07935 -7.70867 -7.37911 -7.21829 -6.72009 -4.29957 2.78653 3.08718 3.12765 3.13495 3.21474 3.77906 3.95990 4.35349 4.66533 4.75081 4.78687 4.94368 5.21019 5.21625 5.28994 5.36249 5.43936 5.46385 5.57788 5.64787 5.68789 5.76030 5.80362 5.82893 5.90745 5.98389 6.01323 6.08225 6.13448 6.19072 6.25751 6.29777 6.40093 6.43314 6.48696 6.51602 6.61511 7.00873 7.11630 7.22003 7.35329 7.41360 7.59338 7.67659 7.72716 7.96573 8.10713 8.21459 8.35793 8.69972 8.94715 9.03580 10.22694 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.025306 B = 0.003099 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.198783 B = 9031.810015 C = 9157.953818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.378 6.378 3 C 0.123 3.877 4 C -0.178 4.178 5 C -0.132 4.132 6 C -0.125 4.125 7 C 0.070 3.930 8 N -0.542 5.542 9 C 0.125 3.875 10 C -0.203 4.203 11 C -0.080 4.080 12 C -0.167 4.167 13 C 0.112 3.888 14 C -0.465 4.465 15 H 0.075 0.925 16 C 0.077 3.923 17 N -0.794 5.794 18 Si 0.905 3.095 19 H -0.271 1.271 20 H -0.276 1.276 21 H -0.261 1.261 22 C -0.227 4.227 23 C -0.084 4.084 24 C 0.065 3.935 25 C -0.104 4.104 26 H 0.040 0.960 27 H 0.078 0.922 28 H 0.044 0.956 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.023 0.977 38 H 0.021 0.979 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.116 0.884 42 H 0.279 0.721 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.048 0.952 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.838 -7.787 -11.069 17.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.297 6.297 3 C 0.084 3.916 4 C -0.236 4.236 5 C -0.170 4.170 6 C -0.163 4.163 7 C -0.057 4.057 8 N -0.267 5.267 9 C -0.001 4.001 10 C -0.205 4.205 11 C -0.099 4.099 12 C -0.186 4.186 13 C 0.110 3.890 14 C -0.495 4.495 15 H 0.094 0.906 16 C -0.141 4.141 17 N -0.420 5.420 18 Si 0.729 3.271 19 H -0.197 1.197 20 H -0.201 1.201 21 H -0.185 1.185 22 C -0.247 4.247 23 C -0.103 4.103 24 C -0.063 4.063 25 C -0.142 4.142 26 H 0.058 0.942 27 H 0.097 0.903 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.042 0.958 38 H 0.039 0.961 39 H 0.083 0.917 40 H 0.104 0.896 41 H 0.133 0.867 42 H 0.090 0.910 43 H 0.107 0.893 44 H 0.099 0.901 45 H 0.066 0.934 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.472 -7.445 -11.336 17.135 hybrid contribution -0.176 0.247 0.734 0.795 sum -10.648 -7.198 -10.602 16.661 Atomic orbital electron populations 1.22730 0.82330 1.02049 1.00158 1.87994 1.18944 1.28192 1.94581 1.20376 0.94317 0.82909 0.93953 1.22491 1.01537 1.01381 0.98166 1.21849 1.00851 0.99830 0.94462 1.21395 0.97108 1.00957 0.96797 1.22302 0.88377 1.00909 0.94117 1.60838 1.02343 1.53246 1.10242 1.20789 0.90293 0.95039 0.94017 1.18876 1.08922 0.97795 0.94897 1.20473 0.98144 0.93928 0.97350 1.21290 1.04962 0.98725 0.93642 1.17598 0.88942 0.90804 0.91691 1.19573 1.08073 1.09233 1.12575 0.90640 1.25885 0.94431 0.99475 0.94280 1.69831 1.04261 1.35817 1.32061 0.86361 0.79542 0.81665 0.79501 1.19663 1.20072 1.18481 1.20927 1.09829 0.95500 0.98431 1.20344 0.99151 0.97021 0.93804 1.21660 0.99891 0.93689 0.91103 1.20521 0.92718 1.02588 0.98334 0.94187 0.90348 0.93709 0.92091 0.92522 0.91330 0.89526 0.92556 0.92172 0.91083 0.90359 0.95837 0.96126 0.91726 0.89605 0.86666 0.90990 0.89330 0.90082 0.93411 0.92009 0.91993 0.89504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.69 101.05 0.98 1.20 16 2 O -0.38 -4.48 7.97 -35.23 -0.28 -4.76 16 3 C 0.12 1.42 0.63 -93.20 -0.06 1.36 16 4 C -0.18 -1.75 8.06 37.16 0.30 -1.45 16 5 C -0.13 -1.61 4.01 -27.17 -0.11 -1.72 16 6 C -0.12 -1.61 4.43 -27.49 -0.12 -1.73 16 7 C 0.07 1.09 4.62 -2.77 -0.01 1.08 16 8 N -0.54 -8.66 3.99 -236.03 -0.94 -9.60 16 9 C 0.12 2.22 4.99 -4.98 -0.02 2.19 16 10 C -0.20 -4.37 4.92 -104.33 -0.51 -4.89 16 11 C -0.08 -1.87 9.67 -39.66 -0.38 -2.25 16 12 C -0.17 -4.35 8.70 -38.87 -0.34 -4.69 16 13 C 0.11 3.01 5.57 -106.83 -0.60 2.41 16 14 C -0.46 -12.46 9.05 -37.74 -0.34 -12.80 16 15 H 0.08 1.95 7.91 -52.49 -0.41 1.54 16 16 C 0.08 1.94 5.14 -17.34 -0.09 1.86 16 17 N -0.79 -20.71 10.97 55.55 0.61 -20.10 16 18 Si 0.90 18.81 29.59 -169.99 -5.03 13.78 16 19 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 20 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 21 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 22 C -0.23 -5.61 9.80 -38.87 -0.38 -5.99 16 23 C -0.08 -1.88 8.21 -39.66 -0.33 -2.20 16 24 C 0.07 0.90 5.37 -4.67 -0.03 0.88 16 25 C -0.10 -1.28 4.24 -29.61 -0.13 -1.41 16 26 H 0.04 0.33 6.42 -51.93 -0.33 -0.01 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.04 0.40 5.98 -51.93 -0.31 0.09 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.50 6.53 -51.93 -0.34 0.16 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.09 1.22 7.78 -51.93 -0.40 0.82 16 33 H 0.06 0.61 7.33 -51.93 -0.38 0.23 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.92 5.00 -51.93 -0.26 0.66 16 36 H 0.08 1.40 6.89 -51.93 -0.36 1.05 16 37 H 0.02 0.37 7.90 -51.93 -0.41 -0.04 16 38 H 0.02 0.36 7.91 -51.93 -0.41 -0.05 16 39 H 0.06 1.10 7.62 -51.93 -0.40 0.70 16 40 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 41 H 0.12 3.12 6.18 -52.48 -0.32 2.80 16 42 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 43 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 44 H 0.08 1.63 8.02 -52.49 -0.42 1.21 16 45 H 0.05 0.68 6.08 -51.93 -0.32 0.36 16 46 H 0.06 0.82 7.34 -51.93 -0.38 0.44 16 47 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 48 H 0.09 1.15 8.08 -51.93 -0.42 0.73 16 LS Contribution 358.99 15.07 5.41 5.41 Total: -1.00 -27.19 358.99 -10.37 -37.56 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -7.97 Total: 5.87 kcal Atomic # 6 Polarization: -25.99 SS G_CDS: -2.17 Total: -28.16 kcal Atomic # 7 Polarization: -29.37 SS G_CDS: -0.33 Total: -29.70 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -0.28 Total: -4.76 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -27.19 -10.37 -37.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361423629.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.647 kcal (2) G-P(sol) polarization free energy of solvation -27.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds