Wall clock time and date at job start Tue Mar 31 2020 07:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99948 * 2 1 4 4 C 1.52996 * 108.96566 * 298.90808 * 3 2 1 5 5 C 1.54508 * 109.04091 * 57.82649 * 3 2 1 6 6 C 1.50533 * 108.85629 * 43.30265 * 5 3 2 7 7 C 1.53919 * 112.93300 * 91.76356 * 6 5 3 8 8 N 1.47943 * 113.33003 * 317.75895 * 7 6 5 9 9 C 1.46898 * 111.00130 * 192.17713 * 8 7 6 10 10 C 1.50700 * 109.47178 * 293.95754 * 9 8 7 11 11 C 1.38635 * 119.74619 * 269.72714 * 10 9 8 12 12 C 1.37621 * 120.24706 * 179.71917 * 11 10 9 13 13 C 1.40714 * 119.74493 * 0.52647 * 12 11 10 14 14 C 1.41393 * 120.24232 * 179.72365 * 13 12 11 15 15 H 1.07999 * 119.99678 * 155.31096 * 14 13 12 16 16 C 1.39944 * 120.00380 * 335.30944 * 14 13 12 17 17 N 1.30823 * 120.00067 * 342.23475 * 16 14 13 18 18 Si 1.86794 * 119.99982 * 162.23213 * 16 14 13 19 19 H 1.48498 * 109.47286 * 94.66698 * 18 16 14 20 20 H 1.48510 * 109.47444 * 214.66841 * 18 16 14 21 21 H 1.48500 * 109.47496 * 334.66435 * 18 16 14 22 22 C 1.40713 * 119.51256 * 359.74893 * 13 12 11 23 23 C 1.37624 * 119.74463 * 359.97438 * 22 13 12 24 24 C 1.44397 * 113.55952 * 318.13309 * 8 7 6 25 25 C 1.45880 * 109.03713 * 179.97438 * 3 2 1 26 26 H 1.08996 * 109.46967 * 60.00024 * 1 2 3 27 27 H 1.08996 * 109.47388 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47269 * 299.99747 * 1 2 3 29 29 H 1.09004 * 109.47384 * 301.09421 * 4 3 2 30 30 H 1.09000 * 109.47102 * 61.09093 * 4 3 2 31 31 H 1.08997 * 109.47624 * 181.08618 * 4 3 2 32 32 H 1.08997 * 109.57517 * 163.11991 * 5 3 2 33 33 H 1.09004 * 109.57262 * 283.49590 * 5 3 2 34 34 H 1.09004 * 108.79548 * 212.65334 * 6 5 3 35 35 H 1.09000 * 108.79147 * 330.98177 * 6 5 3 36 36 H 1.08996 * 108.71214 * 78.75388 * 7 6 5 37 37 H 1.09002 * 108.71223 * 196.89157 * 7 6 5 38 38 H 1.08998 * 109.47010 * 53.95447 * 9 8 7 39 39 H 1.08993 * 109.47504 * 173.95362 * 9 8 7 40 40 H 1.08002 * 119.87713 * 359.97438 * 11 10 9 41 41 H 1.08007 * 120.12766 * 180.27724 * 12 11 10 42 42 H 0.96998 * 120.00423 * 179.97438 * 17 16 14 43 43 H 1.07999 * 120.12999 * 180.02562 * 22 13 12 44 44 H 1.07994 * 119.87455 * 180.02562 * 23 22 13 45 45 H 1.09004 * 109.79462 * 335.77228 * 24 8 7 46 46 H 1.09001 * 109.63873 * 215.16276 * 24 8 7 47 47 H 1.09005 * 108.84666 * 61.74335 * 25 3 2 48 48 H 1.08999 * 108.84348 * 180.21393 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5735 2.0442 -1.2666 5 6 1.5047 2.0823 1.2363 6 6 1.5380 1.1685 2.4321 7 6 2.8609 1.2522 3.2143 8 7 4.0549 1.3041 2.3422 9 6 5.2837 1.0929 3.1189 10 6 5.4826 2.2463 4.0681 11 6 6.2105 3.3540 3.6616 12 6 6.3935 4.4156 4.5181 13 6 5.8480 4.3690 5.8143 14 6 6.0347 5.4513 6.7049 15 1 5.3309 5.6181 7.5069 16 6 7.1313 6.3062 6.5471 17 7 8.1557 5.9299 5.8256 18 14 7.1323 7.9848 7.3665 19 1 7.8307 7.8970 8.6740 20 1 7.8346 8.9609 6.4948 21 1 5.7326 8.4315 7.5820 22 6 5.1160 3.2371 6.2180 23 6 4.9406 2.1895 5.3429 24 6 3.9891 0.3989 1.2191 25 6 3.4635 1.1792 0.0006 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8932 1.4817 -2.1439 30 1 0.4879 2.1424 -1.2739 31 1 2.0280 3.0347 -1.2846 32 1 2.1496 2.9424 1.4159 33 1 0.4828 2.4196 1.0628 34 1 0.7181 1.4337 3.0996 35 1 1.3963 0.1421 2.0937 36 1 2.8433 2.1469 3.8365 37 1 2.9405 0.3786 3.8613 38 1 5.2002 0.1659 3.6861 39 1 6.1352 1.0288 2.4415 40 1 6.6319 3.3857 2.6678 41 1 6.9571 5.2795 4.1978 42 1 8.9156 6.5226 5.7159 43 1 4.6926 3.1910 7.2105 44 1 4.3788 1.3200 5.6503 45 1 3.3124 -0.4245 1.4477 46 1 4.9839 0.0087 1.0043 47 1 3.7725 0.6621 -0.9078 48 1 3.9035 2.1765 0.0045 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361423629.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:18 Heat of formation + Delta-G solvation = -42.141286 kcal Electronic energy + Delta-G solvation = -25561.631889 eV Core-core repulsion = 22194.255499 eV Total energy + Delta-G solvation = -3367.376390 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.25467 -39.61660 -37.96630 -35.65883 -34.42104 -33.56604 -32.14774 -31.12995 -29.79548 -28.08799 -27.75682 -26.56868 -24.65885 -24.05326 -22.79609 -21.71867 -20.78750 -20.50425 -19.18024 -17.59120 -17.19709 -17.03493 -16.61262 -16.29923 -15.83280 -15.80880 -15.62362 -15.17157 -14.92453 -14.39251 -14.31161 -13.91098 -13.78499 -13.63767 -13.39115 -13.32951 -13.26601 -12.94829 -12.82657 -12.72996 -12.57216 -12.53198 -12.32083 -12.07227 -11.88462 -11.79771 -11.69109 -11.50387 -11.28342 -11.20066 -11.03453 -10.97030 -10.35189 -9.29941 -9.21454 -8.90762 -8.61200 -6.29896 0.98783 1.19046 1.37944 1.48981 1.54470 2.21851 2.70179 2.95863 3.21367 3.74990 3.82722 3.87584 3.95773 4.16450 4.24354 4.32362 4.37548 4.49675 4.53690 4.56843 4.61593 4.63558 4.68706 4.72484 4.76090 4.80511 4.86442 4.90342 4.93388 4.96523 5.06839 5.09095 5.13004 5.18807 5.21014 5.24535 5.37661 5.41939 5.48231 5.51086 5.52241 5.75002 6.00158 6.13608 6.23142 6.36835 6.40273 6.43193 6.56476 6.74937 6.97881 7.08428 8.36032 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.025306 B = 0.003099 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.198783 B = 9031.810015 C = 9157.953818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.392 6.392 3 C 0.124 3.876 4 C -0.174 4.174 5 C -0.130 4.130 6 C -0.117 4.117 7 C 0.072 3.928 8 N -0.548 5.548 9 C 0.129 3.871 10 C -0.189 4.189 11 C -0.085 4.085 12 C -0.189 4.189 13 C 0.080 3.920 14 C -0.505 4.505 15 H 0.071 0.929 16 C 0.035 3.965 17 N -0.827 5.827 18 Si 0.980 3.020 19 H -0.263 1.263 20 H -0.265 1.265 21 H -0.260 1.260 22 C -0.244 4.244 23 C -0.082 4.082 24 C 0.068 3.932 25 C -0.101 4.101 26 H 0.051 0.949 27 H 0.091 0.909 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.049 0.951 37 H 0.023 0.977 38 H 0.030 0.970 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.287 0.713 43 H 0.091 0.909 44 H 0.106 0.894 45 H 0.047 0.953 46 H 0.069 0.931 47 H 0.074 0.926 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.979 -8.636 -12.324 19.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.312 6.312 3 C 0.085 3.915 4 C -0.232 4.232 5 C -0.167 4.167 6 C -0.155 4.155 7 C -0.055 4.055 8 N -0.273 5.273 9 C 0.003 3.997 10 C -0.190 4.190 11 C -0.104 4.104 12 C -0.209 4.209 13 C 0.078 3.922 14 C -0.535 4.535 15 H 0.090 0.910 16 C -0.179 4.179 17 N -0.453 5.453 18 Si 0.800 3.200 19 H -0.187 1.187 20 H -0.190 1.190 21 H -0.184 1.184 22 C -0.263 4.263 23 C -0.101 4.101 24 C -0.061 4.061 25 C -0.139 4.139 26 H 0.069 0.931 27 H 0.109 0.891 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.041 0.959 38 H 0.048 0.952 39 H 0.094 0.906 40 H 0.120 0.880 41 H 0.115 0.885 42 H 0.098 0.902 43 H 0.110 0.890 44 H 0.124 0.876 45 H 0.065 0.935 46 H 0.087 0.913 47 H 0.093 0.907 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.624 -8.313 -12.603 19.054 hybrid contribution 0.119 0.352 1.052 1.116 sum -11.505 -7.961 -11.551 18.143 Atomic orbital electron populations 1.22893 0.80963 1.03170 1.00742 1.87967 1.20462 1.28051 1.94680 1.20315 0.93784 0.83118 0.94302 1.22442 1.02264 1.01120 0.97351 1.21817 1.01347 0.98925 0.94660 1.21336 0.95713 1.01456 0.96981 1.22262 0.89603 0.99352 0.94292 1.60741 1.01703 1.54338 1.10482 1.20725 0.91770 0.93455 0.93792 1.19282 1.06445 0.98058 0.95249 1.20699 0.98206 0.93765 0.97697 1.21243 1.06086 0.99331 0.94233 1.17924 0.90164 0.91848 0.92281 1.19808 1.09237 1.10969 1.13443 0.91041 1.26725 0.93438 1.02951 0.94780 1.69882 1.04881 1.37318 1.33219 0.85237 0.79532 0.76498 0.78685 1.18736 1.18966 1.18393 1.21120 1.10096 0.95870 0.99227 1.20601 0.98732 0.97033 0.93707 1.21702 1.00464 0.93385 0.90505 1.20484 0.93459 1.01853 0.98093 0.93065 0.89076 0.93621 0.91559 0.91429 0.91400 0.91767 0.90965 0.91277 0.90569 0.93220 0.95914 0.95209 0.90610 0.87961 0.88504 0.90245 0.89029 0.87603 0.93457 0.91254 0.90735 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.69 113.37 1.10 1.38 16 2 O -0.39 -8.23 7.97 -148.98 -1.19 -9.42 16 3 C 0.12 2.57 0.63 -12.47 -0.01 2.57 16 4 C -0.17 -2.99 8.06 71.98 0.58 -2.41 16 5 C -0.13 -2.94 4.01 30.31 0.12 -2.82 16 6 C -0.12 -2.82 4.43 30.11 0.13 -2.69 16 7 C 0.07 2.17 4.62 86.41 0.40 2.57 16 8 N -0.55 -16.70 3.99 -900.68 -3.59 -20.29 16 9 C 0.13 4.37 4.99 85.56 0.43 4.79 16 10 C -0.19 -8.02 4.92 -19.67 -0.10 -8.12 16 11 C -0.08 -4.00 9.67 22.22 0.21 -3.79 16 12 C -0.19 -10.25 8.70 22.73 0.20 -10.05 16 13 C 0.08 4.46 5.57 -21.29 -0.12 4.34 16 14 C -0.50 -28.18 9.05 23.46 0.21 -27.97 16 15 H 0.07 3.87 7.91 -2.91 -0.02 3.85 16 16 C 0.04 1.84 5.14 85.26 0.44 2.28 16 17 N -0.83 -44.40 10.97 21.83 0.24 -44.16 16 18 Si 0.98 39.22 29.59 68.60 2.03 41.25 16 19 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 20 H -0.27 -10.06 7.11 99.48 0.71 -9.36 16 21 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 22 C -0.24 -12.33 9.80 22.73 0.22 -12.10 16 23 C -0.08 -3.64 8.21 22.22 0.18 -3.45 16 24 C 0.07 1.72 5.37 87.09 0.47 2.19 16 25 C -0.10 -2.30 4.24 28.73 0.12 -2.18 16 26 H 0.05 0.68 6.42 -2.39 -0.02 0.66 16 27 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.05 0.69 5.98 -2.39 -0.01 0.68 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.00 6.53 -2.39 -0.02 0.99 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 1.77 7.78 -2.39 -0.02 1.75 16 33 H 0.07 1.40 7.33 -2.39 -0.02 1.38 16 34 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.08 1.79 5.00 -2.39 -0.01 1.78 16 36 H 0.05 1.77 6.89 -2.39 -0.02 1.75 16 37 H 0.02 0.68 7.90 -2.39 -0.02 0.66 16 38 H 0.03 0.97 7.91 -2.39 -0.02 0.95 16 39 H 0.08 2.41 7.62 -2.39 -0.02 2.39 16 40 H 0.10 4.39 8.06 -2.91 -0.02 4.37 16 41 H 0.10 5.51 6.18 -2.91 -0.02 5.49 16 42 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 43 H 0.09 4.44 8.06 -2.91 -0.02 4.41 16 44 H 0.11 4.11 8.02 -2.91 -0.02 4.09 16 45 H 0.05 1.23 6.08 -2.39 -0.01 1.21 16 46 H 0.07 1.66 7.34 -2.39 -0.02 1.64 16 47 H 0.07 1.52 8.12 -2.38 -0.02 1.50 16 48 H 0.08 1.91 8.08 -2.39 -0.02 1.89 16 Total: -1.00 -59.94 358.99 3.01 -56.92 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: 0.93 Total: 31.14 kcal Atomic # 6 Polarization: -60.05 SS G_CDS: 4.59 Total: -55.45 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: -3.35 Total: -64.44 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -1.19 Total: -9.42 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.25 kcal Total: -59.94 3.01 -56.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361423629.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.782 kcal (2) G-P(sol) polarization free energy of solvation -59.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds