Wall clock time and date at job start Tue Mar 31 2020 07:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42908 * 113.99861 * 2 1 4 4 C 1.52994 * 108.63910 * 307.24178 * 3 2 1 5 5 C 1.50459 * 108.76655 * 188.99151 * 3 2 1 6 6 C 1.54502 * 108.85846 * 331.23958 * 5 3 2 7 7 C 1.45866 * 111.58979 * 282.80995 * 6 5 3 8 8 N 1.47802 * 112.91545 * 61.32620 * 7 6 5 9 9 C 1.46901 * 110.99523 * 153.86704 * 8 7 6 10 10 C 1.50701 * 109.46951 * 293.94549 * 9 8 7 11 11 C 1.38634 * 119.75038 * 269.72692 * 10 9 8 12 12 C 1.37617 * 120.24295 * 179.76548 * 11 10 9 13 13 C 1.40719 * 119.74950 * 0.48926 * 12 11 10 14 14 C 1.41390 * 120.24343 * 179.79116 * 13 12 11 15 15 H 1.08002 * 120.00332 * 24.24284 * 14 13 12 16 16 C 1.39948 * 119.99708 * 204.23645 * 14 13 12 17 17 N 1.30825 * 120.00034 * 16.06657 * 16 14 13 18 18 Si 1.86801 * 120.00101 * 196.05756 * 16 14 13 19 19 H 1.48497 * 109.46899 * 60.00408 * 18 16 14 20 20 H 1.48501 * 109.47145 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47370 * 300.00570 * 18 16 14 22 22 C 1.40713 * 119.50888 * 359.76499 * 13 12 11 23 23 C 1.37621 * 119.74424 * 0.02562 * 22 13 12 24 24 C 1.44269 * 109.46084 * 276.73461 * 8 7 6 25 25 C 1.54063 * 111.97856 * 96.44196 * 24 8 7 26 26 H 1.09004 * 109.47133 * 304.70592 * 1 2 3 27 27 H 1.08993 * 109.47471 * 64.70596 * 1 2 3 28 28 H 1.09000 * 109.46963 * 184.70556 * 1 2 3 29 29 H 1.09000 * 109.46965 * 178.24910 * 4 3 2 30 30 H 1.09000 * 109.47323 * 298.24731 * 4 3 2 31 31 H 1.09002 * 109.47197 * 58.24549 * 4 3 2 32 32 H 1.09004 * 109.57223 * 211.42873 * 5 3 2 33 33 H 1.09006 * 109.56911 * 91.05687 * 5 3 2 34 34 H 1.09001 * 109.05403 * 162.26477 * 6 5 3 35 35 H 1.08999 * 109.05594 * 43.35702 * 6 5 3 36 36 H 1.09004 * 108.79221 * 182.21155 * 7 6 5 37 37 H 1.08992 * 108.79294 * 300.54899 * 7 6 5 38 38 H 1.08996 * 109.47670 * 53.94860 * 9 8 7 39 39 H 1.09003 * 109.46919 * 173.95039 * 9 8 7 40 40 H 1.07992 * 119.87812 * 0.02562 * 11 10 9 41 41 H 1.08000 * 120.12353 * 180.23480 * 12 11 10 42 42 H 0.97003 * 119.99962 * 180.02562 * 17 16 14 43 43 H 1.08002 * 120.12864 * 179.97438 * 22 13 12 44 44 H 1.07998 * 119.87509 * 179.97438 * 23 22 13 45 45 H 1.09006 * 108.98011 * 217.08405 * 24 8 7 46 46 H 1.09001 * 108.98465 * 335.88302 * 24 8 7 47 47 H 1.09006 * 108.91851 * 79.63613 * 25 24 8 48 48 H 1.09004 * 108.92456 * 198.28062 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4076 2.1091 -1.1541 5 6 3.4925 1.1755 -0.2226 6 6 3.9634 -0.1867 0.3338 7 6 4.0711 -0.1641 1.7883 8 7 2.7821 0.1120 2.4566 9 6 2.7581 -0.4584 3.8102 10 6 2.8015 -1.9622 3.7224 11 6 1.6185 -2.6817 3.6530 12 6 1.6464 -4.0549 3.5676 13 6 2.8815 -4.7292 3.5614 14 6 2.9222 -6.1401 3.4785 15 1 2.0961 -6.6793 3.0389 16 6 4.0330 -6.8379 3.9660 17 7 4.8785 -6.2434 4.7681 18 14 4.3084 -8.6181 3.4717 19 1 4.4490 -8.7060 1.9960 20 1 5.5452 -9.1257 4.1183 21 1 3.1498 -9.4380 3.9083 22 6 4.0757 -3.9889 3.6376 23 6 4.0240 -2.6160 3.7179 24 6 2.5541 1.5361 2.4917 25 6 1.6585 2.0055 1.3293 26 1 -0.3633 0.5851 0.8449 27 1 -0.3634 0.4390 -0.9291 28 1 -0.3633 -1.0242 0.0843 29 1 1.8190 3.1184 -1.1478 30 1 1.6494 1.6241 -2.0998 31 1 0.3249 2.1572 -1.0370 32 1 4.0118 1.9812 0.2963 33 1 3.7074 1.2280 -1.2900 34 1 4.9378 -0.4273 -0.0915 35 1 3.2492 -0.9566 0.0418 36 1 4.4429 -1.1308 2.1280 37 1 4.7860 0.6069 2.0755 38 1 3.6228 -0.1021 4.3700 39 1 1.8442 -0.1503 4.3181 40 1 0.6717 -2.1623 3.6617 41 1 0.7237 -4.6132 3.5099 42 1 5.6487 -6.7269 5.1057 43 1 5.0291 -4.4962 3.6339 44 1 4.9392 -2.0457 3.7769 45 1 2.0746 1.7953 3.4357 46 1 3.5131 2.0504 2.4286 47 1 0.6184 1.7926 1.5764 48 1 1.7782 3.0815 1.2029 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361423630.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:21 Heat of formation + Delta-G solvation = -32.621970 kcal Electronic energy + Delta-G solvation = -26063.000051 eV Core-core repulsion = 22696.036450 eV Total energy + Delta-G solvation = -3366.963601 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.01242 -39.54824 -37.99173 -35.67477 -34.52150 -33.35540 -32.17293 -31.11980 -29.71425 -28.26133 -27.50548 -26.43021 -24.75771 -23.78349 -22.86513 -21.77578 -21.06005 -20.08029 -19.18497 -17.29107 -17.08222 -16.99607 -16.75373 -16.02537 -15.98714 -15.63522 -15.45231 -15.11631 -14.79677 -14.74811 -14.25997 -13.94303 -13.72849 -13.61109 -13.50533 -13.26369 -13.04513 -12.92586 -12.83848 -12.73626 -12.63956 -12.35457 -12.20735 -12.11312 -11.87834 -11.65113 -11.55953 -11.29884 -11.22926 -11.13020 -11.00627 -10.92682 -10.05523 -9.28116 -9.15872 -8.91606 -8.58771 -6.29521 0.99917 1.21712 1.37638 1.48833 1.54532 2.22105 2.72348 3.16166 3.25605 3.81358 3.90209 3.96437 4.06597 4.22798 4.27560 4.33070 4.36794 4.47691 4.54137 4.59630 4.64954 4.66834 4.68086 4.73724 4.79406 4.85698 4.87040 4.90004 4.94816 4.98071 5.07854 5.10316 5.14867 5.19128 5.22291 5.35718 5.43341 5.46104 5.52415 5.54087 5.75047 5.77164 6.02619 6.15268 6.26278 6.40012 6.45134 6.56223 6.71177 6.75559 6.99152 7.09864 8.37061 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.022658 B = 0.003613 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.468962 B = 7748.294014 C = 7927.102393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.376 6.376 3 C 0.119 3.881 4 C -0.177 4.177 5 C -0.097 4.097 6 C -0.107 4.107 7 C 0.057 3.943 8 N -0.516 5.516 9 C 0.126 3.874 10 C -0.185 4.185 11 C -0.070 4.070 12 C -0.244 4.244 13 C 0.079 3.921 14 C -0.505 4.505 15 H 0.071 0.929 16 C 0.035 3.965 17 N -0.829 5.829 18 Si 0.981 3.019 19 H -0.262 1.262 20 H -0.266 1.266 21 H -0.260 1.260 22 C -0.188 4.188 23 C -0.096 4.096 24 C 0.054 3.946 25 C -0.130 4.130 26 H 0.044 0.956 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.032 0.968 38 H 0.027 0.973 39 H 0.075 0.925 40 H 0.108 0.892 41 H 0.091 0.909 42 H 0.286 0.714 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.065 0.935 46 H 0.042 0.958 47 H 0.064 0.936 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.112 16.912 -8.023 18.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.295 6.295 3 C 0.080 3.920 4 C -0.234 4.234 5 C -0.135 4.135 6 C -0.145 4.145 7 C -0.070 4.070 8 N -0.239 5.239 9 C -0.001 4.001 10 C -0.186 4.186 11 C -0.089 4.089 12 C -0.264 4.264 13 C 0.077 3.923 14 C -0.535 4.535 15 H 0.089 0.911 16 C -0.179 4.179 17 N -0.455 5.455 18 Si 0.801 3.199 19 H -0.187 1.187 20 H -0.190 1.190 21 H -0.184 1.184 22 C -0.208 4.208 23 C -0.114 4.114 24 C -0.075 4.075 25 C -0.168 4.168 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.045 0.955 39 H 0.093 0.907 40 H 0.126 0.874 41 H 0.109 0.891 42 H 0.097 0.903 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.083 0.917 46 H 0.060 0.940 47 H 0.082 0.918 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.179 16.505 -8.136 18.674 hybrid contribution 0.568 -0.654 0.541 1.022 sum -2.611 15.851 -7.595 17.769 Atomic orbital electron populations 1.22713 0.82491 1.01782 0.99834 1.88179 1.18831 1.27683 1.94785 1.21186 0.93887 0.83200 0.93714 1.22570 1.01671 1.01087 0.98118 1.21425 0.93432 0.97339 1.01282 1.20271 1.00466 0.98902 0.94883 1.21002 0.89605 1.00547 0.95865 1.61572 1.32865 1.12247 1.17254 1.20751 0.99802 0.90518 0.89029 1.19252 0.92321 0.94540 1.12494 1.20544 0.96982 0.92989 0.98351 1.21141 0.96267 0.94803 1.14154 1.17920 0.91796 0.93823 0.88792 1.19801 1.04061 0.92432 1.37164 0.91107 1.26717 0.94102 1.05040 0.92025 1.69874 1.11934 1.40447 1.23279 0.85282 0.78727 0.76315 0.79536 1.18660 1.19049 1.18423 1.21272 0.98060 0.93244 1.08224 1.20699 0.96401 0.93852 1.00491 1.21931 0.99140 0.87782 0.98602 1.22588 1.00047 0.99874 0.94311 0.93749 0.93349 0.91515 0.90277 0.92352 0.91869 0.90382 0.90778 0.92039 0.92141 0.92769 0.94947 0.95514 0.90653 0.87359 0.89109 0.90317 0.88232 0.88317 0.91681 0.93961 0.91753 0.89493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.05 113.37 1.14 1.82 16 2 O -0.38 -10.84 7.29 -148.98 -1.09 -11.93 16 3 C 0.12 2.62 0.67 -11.18 -0.01 2.61 16 4 C -0.18 -2.97 7.69 71.98 0.55 -2.41 16 5 C -0.10 -2.14 5.05 30.28 0.15 -1.99 16 6 C -0.11 -3.10 5.34 28.92 0.15 -2.95 16 7 C 0.06 1.77 4.78 83.94 0.40 2.18 16 8 N -0.52 -15.82 3.62 -916.40 -3.32 -19.13 16 9 C 0.13 4.28 4.90 85.56 0.42 4.70 16 10 C -0.18 -7.98 5.01 -19.67 -0.10 -8.08 16 11 C -0.07 -3.20 9.67 22.22 0.21 -2.99 16 12 C -0.24 -12.65 9.80 22.73 0.22 -12.43 16 13 C 0.08 4.47 5.58 -21.29 -0.12 4.35 16 14 C -0.50 -28.60 9.06 23.46 0.21 -28.38 16 15 H 0.07 3.89 7.90 -2.91 -0.02 3.87 16 16 C 0.04 1.85 5.18 85.26 0.44 2.29 16 17 N -0.83 -44.89 10.84 21.83 0.24 -44.66 16 18 Si 0.98 39.77 29.59 68.60 2.03 41.80 16 19 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 20 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 21 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 22 C -0.19 -10.32 8.70 22.73 0.20 -10.12 16 23 C -0.10 -4.54 7.86 22.22 0.17 -4.36 16 24 C 0.05 1.28 5.17 87.15 0.45 1.73 16 25 C -0.13 -2.61 5.06 31.39 0.16 -2.46 16 26 H 0.04 1.00 6.02 -2.38 -0.01 0.98 16 27 H 0.05 0.96 6.50 -2.39 -0.02 0.94 16 28 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.08 1.03 8.11 -2.39 -0.02 1.01 16 30 H 0.06 1.02 7.99 -2.39 -0.02 1.00 16 31 H 0.06 1.00 6.39 -2.39 -0.02 0.98 16 32 H 0.08 1.49 7.15 -2.38 -0.02 1.48 16 33 H 0.07 1.46 7.63 -2.38 -0.02 1.44 16 34 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.06 2.16 6.39 -2.39 -0.02 2.14 16 36 H 0.05 2.02 4.64 -2.38 -0.01 2.01 16 37 H 0.03 0.90 7.23 -2.39 -0.02 0.88 16 38 H 0.03 0.88 8.06 -2.39 -0.02 0.86 16 39 H 0.08 2.37 7.77 -2.39 -0.02 2.35 16 40 H 0.11 4.38 8.06 -2.91 -0.02 4.35 16 41 H 0.09 4.51 8.06 -2.91 -0.02 4.49 16 42 H 0.29 14.04 8.30 -92.71 -0.77 13.27 16 43 H 0.10 5.73 6.07 -2.91 -0.02 5.71 16 44 H 0.10 4.25 7.43 -2.91 -0.02 4.23 16 45 H 0.06 1.43 7.39 -2.38 -0.02 1.42 16 46 H 0.04 0.92 6.50 -2.39 -0.02 0.91 16 47 H 0.06 1.35 5.87 -2.38 -0.01 1.34 16 48 H 0.09 1.31 7.96 -2.38 -0.02 1.29 16 Total: -1.00 -62.22 355.92 3.47 -58.75 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: 0.94 Total: 31.67 kcal Atomic # 6 Polarization: -61.17 SS G_CDS: 4.67 Total: -56.50 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: -3.08 Total: -63.79 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: -1.09 Total: -11.93 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal Total: -62.22 3.47 -58.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361423630.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.124 kcal (2) G-P(sol) polarization free energy of solvation -62.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds