Wall clock time and date at job start Tue Mar 31 2020 07:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38161 * 120.02969 * 2 1 4 4 C 1.38243 * 120.05417 * 180.29675 * 3 2 1 5 5 C 1.38286 * 120.11266 * 359.68445 * 4 3 2 6 6 C 1.38123 * 120.05558 * 0.04273 * 5 4 3 7 7 C 1.38713 * 120.02575 * 179.72513 * 2 1 3 8 8 O 1.35898 * 120.05463 * 0.02562 * 7 2 1 9 9 C 1.42900 * 117.00001 * 174.24270 * 8 7 2 10 10 H 1.08998 * 109.47296 * 324.96037 * 9 8 7 11 11 C 1.53001 * 109.47717 * 84.95737 * 9 8 7 12 12 C 1.52997 * 109.47732 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47286 * 300.00656 * 12 11 9 14 14 C 1.52996 * 109.47443 * 59.99355 * 13 12 11 15 15 C 1.52997 * 109.47406 * 300.00571 * 14 13 12 16 16 H 1.09011 * 109.46982 * 299.99736 * 15 14 13 17 17 N 1.46896 * 109.47457 * 179.97438 * 15 14 13 18 18 C 1.46905 * 110.99967 * 84.99848 * 17 15 14 19 19 C 1.53006 * 109.46944 * 180.02562 * 18 17 15 20 20 C 1.50695 * 109.47052 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99998 * 0.02562 * 20 19 18 22 22 C 1.37877 * 120.00253 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00210 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99599 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47321 * 90.00130 * 24 22 20 26 26 H 1.48509 * 109.46854 * 209.99903 * 24 22 20 27 27 H 1.48491 * 109.47308 * 329.99578 * 24 22 20 28 28 H 1.09002 * 109.47130 * 270.27570 * 1 2 3 29 29 H 1.08996 * 109.47080 * 30.27260 * 1 2 3 30 30 H 1.08995 * 109.47250 * 150.27264 * 1 2 3 31 31 H 1.08005 * 119.97538 * 0.02562 * 3 2 1 32 32 H 1.08000 * 119.94375 * 179.70036 * 4 3 2 33 33 H 1.08008 * 119.97356 * 180.02562 * 5 4 3 34 34 H 1.08003 * 120.02914 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.47176 * 300.00801 * 11 9 8 36 36 H 1.09011 * 109.46680 * 59.99874 * 11 9 8 37 37 H 1.09009 * 109.46475 * 60.00177 * 12 11 9 38 38 H 1.08994 * 109.47461 * 179.97438 * 12 11 9 39 39 H 1.08996 * 109.47012 * 299.99421 * 13 12 11 40 40 H 1.09001 * 109.46943 * 179.97438 * 13 12 11 41 41 H 1.09001 * 109.47673 * 180.02562 * 14 13 12 42 42 H 1.09009 * 109.47150 * 59.99970 * 14 13 12 43 43 H 1.00904 * 111.00421 * 208.94796 * 17 15 14 44 44 H 1.09000 * 109.46784 * 299.99955 * 18 17 15 45 45 H 1.08993 * 109.47378 * 60.00296 * 18 17 15 46 46 H 1.08991 * 109.47211 * 299.99794 * 19 18 17 47 47 H 1.09000 * 109.47222 * 60.00087 * 19 18 17 48 48 H 0.97001 * 120.00336 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5809 1.1968 -0.0062 5 6 4.2752 0.0008 -0.0058 6 6 3.5886 -1.1977 -0.0001 7 6 2.2011 -1.2010 0.0058 8 8 1.5233 -2.3788 0.0109 9 6 2.2978 -3.5735 -0.1111 10 1 3.1469 -3.3905 -0.7694 11 6 2.8046 -3.9961 1.2693 12 6 3.6332 -5.2756 1.1388 13 6 2.7633 -6.3891 0.5521 14 6 2.2565 -5.9666 -0.8283 15 6 1.4278 -4.6871 -0.6978 16 1 0.5786 -4.8698 -0.0392 17 7 0.9418 -4.2811 -2.0232 18 6 -0.3054 -4.9791 -2.3631 19 6 -0.7792 -4.5317 -3.7475 20 6 -2.0582 -5.2481 -4.0964 21 1 -2.4902 -5.9518 -3.4002 22 6 -2.6770 -5.0053 -5.3043 23 7 -3.7929 -5.6309 -5.6091 24 14 -1.9294 -3.7888 -6.5087 25 1 -0.9924 -4.5009 -7.4143 26 1 -3.0092 -3.1584 -7.3100 27 1 -1.1924 -2.7398 -5.7594 28 1 -0.3633 0.0049 1.0277 29 1 -0.3633 0.8875 -0.5180 30 1 -0.3633 -0.8924 -0.5096 31 1 1.6585 2.1316 0.0004 32 1 4.1195 2.1328 -0.0111 33 1 5.3553 0.0039 -0.0103 34 1 4.1313 -2.1314 -0.0003 35 1 3.4240 -3.2026 1.6875 36 1 1.9553 -4.1792 1.9278 37 1 4.4825 -5.0928 0.4802 38 1 3.9947 -5.5763 2.1221 39 1 1.9141 -6.5718 1.2106 40 1 3.3538 -7.3005 0.4587 41 1 1.6363 -6.7596 -1.2461 42 1 3.1057 -5.7838 -1.4869 43 1 0.8213 -3.2805 -2.0734 44 1 -0.1295 -6.0548 -2.3697 45 1 -1.0688 -4.7403 -1.6227 46 1 -0.9550 -3.4561 -3.7413 47 1 -0.0157 -4.7709 -4.4877 48 1 -4.2285 -5.4598 -6.4587 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361772574.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:56 Heat of formation + Delta-G solvation = -39.527770 kcal Electronic energy + Delta-G solvation = -25290.660795 eV Core-core repulsion = 21923.397736 eV Total energy + Delta-G solvation = -3367.263059 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.72649 -38.80753 -36.77228 -35.25555 -32.90250 -32.80634 -30.69466 -30.43946 -29.76602 -27.78978 -26.79276 -24.10912 -23.57801 -22.01463 -21.59269 -21.32293 -20.35029 -19.70843 -18.10341 -16.76052 -16.49800 -15.81245 -15.49720 -15.35668 -14.72804 -14.63036 -14.37163 -14.14199 -14.06406 -13.53406 -13.29389 -13.18721 -13.06572 -12.87231 -12.67241 -12.43329 -12.30330 -12.08580 -11.63225 -11.54743 -11.43464 -11.34798 -11.23473 -10.98464 -10.88850 -10.65379 -10.60938 -10.33375 -10.06196 -9.75594 -9.62159 -9.19179 -8.92824 -8.50869 -8.17228 -7.94035 -6.01846 -3.99864 1.20474 1.34703 3.08067 3.35067 3.41748 3.47636 3.64711 4.31583 4.48653 4.49021 4.67483 4.70401 4.76238 4.86784 4.91968 5.01259 5.05727 5.17462 5.24134 5.27823 5.33023 5.33830 5.37300 5.49042 5.59485 5.63639 5.68119 5.75326 5.78323 5.85209 5.92013 5.97462 6.00297 6.18306 6.21734 6.22867 6.24842 6.29458 6.35538 6.40608 6.43940 6.71840 6.82445 7.16134 7.38653 7.42771 7.62079 7.78406 7.94065 8.56040 9.02322 9.60898 11.11539 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.011424 B = 0.004252 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.437814 B = 6583.332550 C = 8365.634823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.116 4.116 3 C -0.086 4.086 4 C -0.159 4.159 5 C -0.089 4.089 6 C -0.206 4.206 7 C 0.137 3.863 8 O -0.305 6.305 9 C 0.085 3.915 10 H 0.080 0.920 11 C -0.142 4.142 12 C -0.115 4.115 13 C -0.123 4.123 14 C -0.106 4.106 15 C 0.096 3.904 16 H 0.051 0.949 17 N -0.690 5.690 18 C 0.075 3.925 19 C -0.009 4.009 20 C -0.520 4.520 21 H 0.071 0.929 22 C 0.067 3.933 23 N -0.905 5.905 24 Si 0.881 3.119 25 H -0.277 1.277 26 H -0.289 1.289 27 H -0.265 1.265 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.126 0.874 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.129 0.871 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.341 0.659 44 H 0.064 0.936 45 H 0.023 0.977 46 H 0.013 0.987 47 H 0.020 0.980 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.788 9.108 16.014 25.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.117 4.117 3 C -0.104 4.104 4 C -0.177 4.177 5 C -0.107 4.107 6 C -0.224 4.224 7 C 0.091 3.909 8 O -0.219 6.219 9 C 0.029 3.971 10 H 0.098 0.902 11 C -0.180 4.180 12 C -0.153 4.153 13 C -0.161 4.161 14 C -0.144 4.144 15 C -0.015 4.015 16 H 0.068 0.932 17 N -0.321 5.321 18 C -0.053 4.053 19 C -0.047 4.047 20 C -0.558 4.558 21 H 0.089 0.911 22 C -0.134 4.134 23 N -0.544 5.544 24 Si 0.709 3.291 25 H -0.203 1.203 26 H -0.215 1.215 27 H -0.190 1.190 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.144 0.856 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.147 0.853 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.159 0.841 44 H 0.082 0.918 45 H 0.041 0.959 46 H 0.031 0.969 47 H 0.038 0.962 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 17.821 8.594 15.545 25.162 hybrid contribution -0.108 1.006 -0.167 1.025 sum 17.714 9.600 15.378 25.346 Atomic orbital electron populations 1.20633 0.90377 1.03238 1.02173 1.19338 0.96685 0.90402 1.05284 1.20882 0.94120 0.96781 0.98576 1.21000 0.94227 0.97970 1.04551 1.20898 0.99603 0.91937 0.98238 1.21298 0.93158 0.99430 1.08560 1.18837 0.90354 0.85792 0.95913 1.86103 1.36310 1.12228 1.87239 1.22715 0.94757 0.82900 0.96778 0.90179 1.22097 1.00711 0.98286 0.96941 1.21491 0.98166 0.94430 1.01175 1.21602 0.99555 0.97957 0.96977 1.21536 1.00009 0.96439 0.96413 1.21528 0.96418 0.92797 0.90714 0.93150 1.60685 1.33759 1.11920 1.25774 1.21985 0.87009 0.98043 0.98241 1.19535 0.96484 0.96434 0.92255 1.21068 1.06439 1.25045 1.03273 0.91133 1.24994 0.94656 0.95781 0.97928 1.69915 1.18141 1.42848 1.23457 0.86751 0.78909 0.82175 0.81298 1.20259 1.21501 1.18969 0.91540 0.91685 0.90746 0.85602 0.86175 0.86103 0.85341 0.91315 0.90811 0.91777 0.91559 0.91824 0.91519 0.90731 0.91156 0.84056 0.91788 0.95917 0.96894 0.96182 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 9.79 36.01 0.35 -0.91 16 2 C -0.12 -1.44 5.89 -104.47 -0.62 -2.06 16 3 C -0.09 -0.91 9.70 -39.61 -0.38 -1.29 16 4 C -0.16 -1.57 10.04 -39.56 -0.40 -1.96 16 5 C -0.09 -0.89 10.04 -39.61 -0.40 -1.29 16 6 C -0.21 -2.34 8.24 -39.43 -0.33 -2.66 16 7 C 0.14 1.78 6.57 -39.22 -0.26 1.52 16 8 O -0.31 -4.22 7.98 -19.42 -0.16 -4.37 16 9 C 0.08 1.04 1.66 -26.73 -0.04 0.99 16 10 H 0.08 0.98 6.31 -51.93 -0.33 0.65 16 11 C -0.14 -1.42 5.18 -26.73 -0.14 -1.56 16 12 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 13 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 14 C -0.11 -1.31 5.43 -26.73 -0.15 -1.45 16 15 C 0.10 1.35 2.21 -67.72 -0.15 1.20 16 16 H 0.05 0.77 7.80 -51.92 -0.41 0.36 16 17 N -0.69 -12.01 6.31 -106.72 -0.67 -12.68 16 18 C 0.08 1.56 5.42 -3.82 -0.02 1.54 16 19 C -0.01 -0.23 4.30 -27.88 -0.12 -0.35 16 20 C -0.52 -15.12 9.66 -34.44 -0.33 -15.46 16 21 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 22 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 23 N -0.90 -28.30 13.96 55.43 0.77 -27.53 16 24 Si 0.88 22.32 27.47 -169.99 -4.67 17.65 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 30 H 0.07 1.00 7.53 -51.93 -0.39 0.61 16 31 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 32 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 34 H 0.13 1.30 5.43 -52.48 -0.28 1.01 16 35 H 0.07 0.65 6.91 -51.93 -0.36 0.29 16 36 H 0.07 0.78 8.14 -51.92 -0.42 0.35 16 37 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 1.01 7.45 -51.93 -0.39 0.63 16 42 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 43 H 0.34 6.06 7.64 -39.29 -0.30 5.76 16 44 H 0.06 1.33 7.44 -51.93 -0.39 0.94 16 45 H 0.02 0.48 8.06 -51.93 -0.42 0.06 16 46 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 47 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 48 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 372.83 15.07 5.62 5.62 Total: -1.00 -31.37 372.83 -10.76 -42.13 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -8.26 Total: 3.51 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: -3.39 Total: -24.33 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.10 Total: -40.21 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: -0.16 Total: -4.37 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.67 Total: 17.65 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.37 -10.76 -42.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361772574.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.598 kcal (2) G-P(sol) polarization free energy of solvation -31.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds