Wall clock time and date at job start Tue Mar 31 2020 07:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38161 * 120.02969 * 2 1 4 4 C 1.38243 * 120.05417 * 180.29675 * 3 2 1 5 5 C 1.38286 * 120.11266 * 359.68445 * 4 3 2 6 6 C 1.38123 * 120.05558 * 0.04273 * 5 4 3 7 7 C 1.38713 * 120.02575 * 179.72513 * 2 1 3 8 8 O 1.35898 * 120.05463 * 0.02562 * 7 2 1 9 9 C 1.42900 * 117.00001 * 174.24270 * 8 7 2 10 10 H 1.08998 * 109.47296 * 324.96037 * 9 8 7 11 11 C 1.53001 * 109.47717 * 84.95737 * 9 8 7 12 12 C 1.52997 * 109.47732 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47286 * 300.00656 * 12 11 9 14 14 C 1.52996 * 109.47443 * 59.99355 * 13 12 11 15 15 C 1.52997 * 109.47406 * 300.00571 * 14 13 12 16 16 H 1.09011 * 109.46982 * 299.99736 * 15 14 13 17 17 N 1.46896 * 109.47457 * 179.97438 * 15 14 13 18 18 C 1.46905 * 110.99967 * 84.99848 * 17 15 14 19 19 C 1.53006 * 109.46944 * 180.02562 * 18 17 15 20 20 C 1.50695 * 109.47052 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99998 * 0.02562 * 20 19 18 22 22 C 1.37877 * 120.00253 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00210 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99599 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47321 * 90.00130 * 24 22 20 26 26 H 1.48509 * 109.46854 * 209.99903 * 24 22 20 27 27 H 1.48491 * 109.47308 * 329.99578 * 24 22 20 28 28 H 1.09002 * 109.47130 * 270.27570 * 1 2 3 29 29 H 1.08996 * 109.47080 * 30.27260 * 1 2 3 30 30 H 1.08995 * 109.47250 * 150.27264 * 1 2 3 31 31 H 1.08005 * 119.97538 * 0.02562 * 3 2 1 32 32 H 1.08000 * 119.94375 * 179.70036 * 4 3 2 33 33 H 1.08008 * 119.97356 * 180.02562 * 5 4 3 34 34 H 1.08003 * 120.02914 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.47176 * 300.00801 * 11 9 8 36 36 H 1.09011 * 109.46680 * 59.99874 * 11 9 8 37 37 H 1.09009 * 109.46475 * 60.00177 * 12 11 9 38 38 H 1.08994 * 109.47461 * 179.97438 * 12 11 9 39 39 H 1.08996 * 109.47012 * 299.99421 * 13 12 11 40 40 H 1.09001 * 109.46943 * 179.97438 * 13 12 11 41 41 H 1.09001 * 109.47673 * 180.02562 * 14 13 12 42 42 H 1.09009 * 109.47150 * 59.99970 * 14 13 12 43 43 H 1.00904 * 111.00421 * 208.94796 * 17 15 14 44 44 H 1.09000 * 109.46784 * 299.99955 * 18 17 15 45 45 H 1.08993 * 109.47378 * 60.00296 * 18 17 15 46 46 H 1.08991 * 109.47211 * 299.99794 * 19 18 17 47 47 H 1.09000 * 109.47222 * 60.00087 * 19 18 17 48 48 H 0.97001 * 120.00336 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5809 1.1968 -0.0062 5 6 4.2752 0.0008 -0.0058 6 6 3.5886 -1.1977 -0.0001 7 6 2.2011 -1.2010 0.0058 8 8 1.5233 -2.3788 0.0109 9 6 2.2978 -3.5735 -0.1111 10 1 3.1469 -3.3905 -0.7694 11 6 2.8046 -3.9961 1.2693 12 6 3.6332 -5.2756 1.1388 13 6 2.7633 -6.3891 0.5521 14 6 2.2565 -5.9666 -0.8283 15 6 1.4278 -4.6871 -0.6978 16 1 0.5786 -4.8698 -0.0392 17 7 0.9418 -4.2811 -2.0232 18 6 -0.3054 -4.9791 -2.3631 19 6 -0.7792 -4.5317 -3.7475 20 6 -2.0582 -5.2481 -4.0964 21 1 -2.4902 -5.9518 -3.4002 22 6 -2.6770 -5.0053 -5.3043 23 7 -3.7929 -5.6309 -5.6091 24 14 -1.9294 -3.7888 -6.5087 25 1 -0.9924 -4.5009 -7.4143 26 1 -3.0092 -3.1584 -7.3100 27 1 -1.1924 -2.7398 -5.7594 28 1 -0.3633 0.0049 1.0277 29 1 -0.3633 0.8875 -0.5180 30 1 -0.3633 -0.8924 -0.5096 31 1 1.6585 2.1316 0.0004 32 1 4.1195 2.1328 -0.0111 33 1 5.3553 0.0039 -0.0103 34 1 4.1313 -2.1314 -0.0003 35 1 3.4240 -3.2026 1.6875 36 1 1.9553 -4.1792 1.9278 37 1 4.4825 -5.0928 0.4802 38 1 3.9947 -5.5763 2.1221 39 1 1.9141 -6.5718 1.2106 40 1 3.3538 -7.3005 0.4587 41 1 1.6363 -6.7596 -1.2461 42 1 3.1057 -5.7838 -1.4869 43 1 0.8213 -3.2805 -2.0734 44 1 -0.1295 -6.0548 -2.3697 45 1 -1.0688 -4.7403 -1.6227 46 1 -0.9550 -3.4561 -3.7413 47 1 -0.0157 -4.7709 -4.4877 48 1 -4.2285 -5.4598 -6.4587 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361772574.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:55 Heat of formation + Delta-G solvation = -57.244968 kcal Electronic energy + Delta-G solvation = -25291.429071 eV Core-core repulsion = 21923.397736 eV Total energy + Delta-G solvation = -3368.031335 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.64345 -39.73522 -37.74992 -36.68923 -34.84862 -33.73534 -32.34477 -31.31291 -30.71674 -29.19725 -27.65275 -25.89823 -24.45073 -23.15336 -22.51533 -22.22421 -22.03787 -20.72370 -19.00318 -18.95333 -17.55382 -16.65395 -16.54688 -16.44737 -16.29990 -15.74299 -15.61857 -15.39023 -15.02083 -14.82549 -14.60096 -14.32821 -14.13621 -14.02412 -13.99133 -13.66654 -13.31866 -13.16674 -13.01906 -12.92114 -12.52251 -12.43279 -12.25545 -12.18284 -11.96258 -11.88119 -11.72430 -11.71937 -11.48380 -11.41900 -11.35884 -11.02210 -10.79221 -9.73678 -9.41891 -9.03720 -8.32272 -6.36847 0.39784 0.52120 1.34712 1.35927 1.48995 2.17077 2.34448 2.83612 3.03072 3.09743 3.54615 3.85085 3.88360 3.90230 3.96549 4.12651 4.16940 4.21493 4.25112 4.35403 4.37709 4.42204 4.45647 4.49750 4.53122 4.68069 4.76118 4.77028 4.81632 4.84437 4.89778 4.98076 5.02200 5.10944 5.14313 5.20675 5.26268 5.30796 5.32487 5.43053 5.44706 5.47326 5.55781 5.59636 5.62465 5.93064 6.08428 6.22045 6.41838 6.50059 6.70653 7.28048 8.84468 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.011424 B = 0.004252 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.437814 B = 6583.332550 C = 8365.634823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.140 4.140 3 C -0.090 4.090 4 C -0.159 4.159 5 C -0.091 4.091 6 C -0.212 4.212 7 C 0.111 3.889 8 O -0.326 6.326 9 C 0.090 3.910 10 H 0.083 0.917 11 C -0.135 4.135 12 C -0.109 4.109 13 C -0.118 4.118 14 C -0.103 4.103 15 C 0.094 3.906 16 H 0.035 0.965 17 N -0.686 5.686 18 C 0.091 3.909 19 C -0.002 4.002 20 C -0.534 4.534 21 H 0.032 0.968 22 C 0.009 3.991 23 N -0.949 5.949 24 Si 0.952 3.048 25 H -0.265 1.265 26 H -0.281 1.281 27 H -0.252 1.252 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.048 0.952 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.139 0.861 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.083 0.917 41 H 0.056 0.944 42 H 0.073 0.927 43 H 0.339 0.661 44 H 0.060 0.940 45 H 0.010 0.990 46 H 0.013 0.987 47 H 0.022 0.978 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.945 10.907 16.397 28.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.141 4.141 3 C -0.108 4.108 4 C -0.177 4.177 5 C -0.109 4.109 6 C -0.231 4.231 7 C 0.066 3.934 8 O -0.241 6.241 9 C 0.034 3.966 10 H 0.101 0.899 11 C -0.173 4.173 12 C -0.147 4.147 13 C -0.156 4.156 14 C -0.141 4.141 15 C -0.016 4.016 16 H 0.053 0.947 17 N -0.317 5.317 18 C -0.038 4.038 19 C -0.039 4.039 20 C -0.572 4.572 21 H 0.050 0.950 22 C -0.188 4.188 23 N -0.589 5.589 24 Si 0.776 3.224 25 H -0.190 1.190 26 H -0.207 1.207 27 H -0.176 1.176 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.163 0.837 32 H 0.165 0.835 33 H 0.165 0.835 34 H 0.156 0.844 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.102 0.898 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.157 0.843 44 H 0.078 0.922 45 H 0.028 0.972 46 H 0.032 0.968 47 H 0.041 0.959 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 20.996 10.389 15.951 28.341 hybrid contribution -1.126 0.436 -0.227 1.229 sum 19.870 10.825 15.724 27.555 Atomic orbital electron populations 1.20585 0.90704 1.02514 1.02290 1.19573 0.96861 0.91164 1.06471 1.21178 0.94852 0.96851 0.97940 1.21384 0.94036 0.99151 1.03142 1.21278 1.01044 0.91466 0.97082 1.21485 0.92526 1.00586 1.08496 1.19101 0.91291 0.85526 0.97438 1.86068 1.37321 1.12934 1.87741 1.22675 0.93922 0.81935 0.98080 0.89879 1.22055 1.00711 0.99389 0.95172 1.21491 0.97797 0.92937 1.02460 1.21581 0.99886 0.99151 0.94992 1.21520 0.99420 0.94790 0.98390 1.21658 0.96573 0.94701 0.88687 0.94685 1.60646 1.31388 1.11484 1.28190 1.21640 0.88223 0.98042 0.95930 1.19405 0.94415 0.95757 0.94371 1.21372 1.08198 1.24791 1.02885 0.94956 1.25956 0.95006 0.97853 1.00033 1.70056 1.19779 1.44688 1.24417 0.85627 0.78388 0.79741 0.78686 1.19003 1.20660 1.17575 0.91098 0.90398 0.93327 0.83668 0.83494 0.83460 0.84382 0.90320 0.91672 0.90710 0.89523 0.92190 0.89823 0.92525 0.90829 0.84311 0.92164 0.97195 0.96840 0.95943 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.48 9.79 71.24 0.70 -1.78 16 2 C -0.14 -3.39 5.89 -19.77 -0.12 -3.51 16 3 C -0.09 -1.74 9.70 22.25 0.22 -1.53 16 4 C -0.16 -2.66 10.04 22.28 0.22 -2.44 16 5 C -0.09 -1.56 10.04 22.25 0.22 -1.34 16 6 C -0.21 -4.43 8.24 22.36 0.18 -4.25 16 7 C 0.11 2.84 6.57 22.51 0.15 2.98 16 8 O -0.33 -9.11 7.98 -92.40 -0.74 -9.85 16 9 C 0.09 2.15 1.66 30.59 0.05 2.20 16 10 H 0.08 1.92 6.31 -2.39 -0.02 1.91 16 11 C -0.14 -2.50 5.18 30.59 0.16 -2.34 16 12 C -0.11 -1.59 5.92 30.59 0.18 -1.41 16 13 C -0.12 -2.08 5.92 30.59 0.18 -1.90 16 14 C -0.10 -2.49 5.43 30.59 0.17 -2.33 16 15 C 0.09 2.67 2.21 44.92 0.10 2.77 16 16 H 0.04 1.11 7.80 -2.38 -0.02 1.09 16 17 N -0.69 -24.17 6.31 -491.55 -3.10 -27.27 16 18 C 0.09 3.87 5.42 86.30 0.47 4.34 16 19 C 0.00 -0.08 4.30 29.85 0.13 0.04 16 20 C -0.53 -32.08 9.66 25.60 0.25 -31.84 16 21 H 0.03 2.12 7.99 -2.91 -0.02 2.10 16 22 C 0.01 0.52 5.47 84.65 0.46 0.98 16 23 N -0.95 -60.79 13.96 21.45 0.30 -60.49 16 24 Si 0.95 46.00 27.47 68.60 1.88 47.88 16 25 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 26 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 27 H -0.25 -11.55 6.54 99.48 0.65 -10.90 16 28 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.08 1.57 8.09 -2.39 -0.02 1.55 16 30 H 0.05 1.38 7.53 -2.39 -0.02 1.36 16 31 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 32 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 33 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 34 H 0.14 2.49 5.43 -2.91 -0.02 2.47 16 35 H 0.08 1.32 6.91 -2.39 -0.02 1.31 16 36 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.09 0.97 8.14 -2.39 -0.02 0.96 16 39 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.06 1.56 7.45 -2.39 -0.02 1.54 16 42 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 43 H 0.34 12.22 7.64 -89.69 -0.69 11.53 16 44 H 0.06 2.59 7.44 -2.39 -0.02 2.58 16 45 H 0.01 0.44 8.06 -2.39 -0.02 0.42 16 46 H 0.01 0.66 7.20 -2.39 -0.02 0.65 16 47 H 0.02 1.10 7.57 -2.39 -0.02 1.09 16 48 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -69.40 372.83 2.25 -67.15 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 0.19 Total: 23.92 kcal Atomic # 6 Polarization: -45.06 SS G_CDS: 3.72 Total: -41.34 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: -2.80 Total: -87.76 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -0.74 Total: -9.85 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.88 Total: 47.88 kcal Total: -69.40 2.25 -67.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361772574.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.901 kcal (2) G-P(sol) polarization free energy of solvation -69.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds