Wall clock time and date at job start Tue Mar 31 2020 07:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38169 * 120.02477 * 2 1 4 4 C 1.38245 * 120.05387 * 179.74306 * 3 2 1 5 5 C 1.38288 * 120.11383 * 0.27273 * 4 3 2 6 6 C 1.38120 * 120.05148 * 359.95803 * 5 4 3 7 7 C 1.38709 * 120.03044 * 180.22199 * 2 1 3 8 8 O 1.35895 * 120.05607 * 359.97438 * 7 2 1 9 9 C 1.42902 * 117.00045 * 174.82102 * 8 7 2 10 10 H 1.09004 * 109.46717 * 324.95279 * 9 8 7 11 11 C 1.52998 * 109.47060 * 84.95480 * 9 8 7 12 12 C 1.52995 * 109.47174 * 60.00075 * 11 9 8 13 13 C 1.53003 * 109.47175 * 59.99813 * 12 11 9 14 14 C 1.52998 * 109.47222 * 300.00158 * 13 12 11 15 15 C 1.52995 * 109.47174 * 59.99841 * 14 13 12 16 16 H 1.09002 * 109.47113 * 60.00073 * 15 14 13 17 17 N 1.46894 * 109.47403 * 180.02562 * 15 14 13 18 18 C 1.46904 * 110.99990 * 275.00406 * 17 15 14 19 19 C 1.53000 * 109.46905 * 179.97438 * 18 17 15 20 20 C 1.50709 * 109.47028 * 179.97438 * 19 18 17 21 21 H 1.07995 * 119.99771 * 359.97438 * 20 19 18 22 22 C 1.37875 * 119.99900 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00051 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99572 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47331 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47134 * 120.00510 * 24 22 20 27 27 H 1.48511 * 109.47122 * 240.00008 * 24 22 20 28 28 H 1.08997 * 109.47519 * 90.00456 * 1 2 3 29 29 H 1.09003 * 109.47192 * 210.00378 * 1 2 3 30 30 H 1.08999 * 109.47686 * 330.00245 * 1 2 3 31 31 H 1.08005 * 119.97337 * 0.02562 * 3 2 1 32 32 H 1.08001 * 119.94549 * 180.25115 * 4 3 2 33 33 H 1.07994 * 119.97410 * 179.97438 * 5 4 3 34 34 H 1.08006 * 120.02381 * 180.02562 * 6 5 4 35 35 H 1.09002 * 109.47041 * 180.02562 * 11 9 8 36 36 H 1.08998 * 109.47152 * 299.99871 * 11 9 8 37 37 H 1.09004 * 109.47334 * 179.97438 * 12 11 9 38 38 H 1.09002 * 109.47113 * 299.99927 * 12 11 9 39 39 H 1.09002 * 109.47006 * 60.00049 * 13 12 11 40 40 H 1.09004 * 109.47179 * 179.97438 * 13 12 11 41 41 H 1.08998 * 109.47152 * 180.02562 * 14 13 12 42 42 H 1.09002 * 109.47041 * 299.99870 * 14 13 12 43 43 H 1.00899 * 111.00469 * 151.04001 * 17 15 14 44 44 H 1.09001 * 109.46951 * 299.99281 * 18 17 15 45 45 H 1.09000 * 109.47149 * 59.99643 * 18 17 15 46 46 H 1.09000 * 109.47281 * 299.99307 * 19 18 17 47 47 H 1.09001 * 109.47689 * 59.99387 * 19 18 17 48 48 H 0.97006 * 119.99867 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5808 1.1970 0.0054 5 6 4.2752 0.0011 0.0051 6 6 3.5887 -1.1974 0.0002 7 6 2.2011 -1.2009 -0.0047 8 8 1.5234 -2.3788 -0.0087 9 6 2.2990 -3.5731 -0.1283 10 1 3.1533 -3.3877 -0.7794 11 6 2.7948 -3.9998 1.2548 12 6 1.5956 -4.2598 2.1686 13 6 0.7309 -5.3718 1.5713 14 6 0.2351 -4.9451 0.1883 15 6 1.4342 -4.6850 -0.7256 16 1 2.0258 -5.5960 -0.8168 17 7 0.9583 -4.2747 -2.0533 18 6 0.6554 -5.4446 -2.8887 19 6 0.1631 -4.9781 -4.2602 20 6 -0.1470 -6.1782 -5.1174 21 1 -0.0066 -7.1739 -4.7235 22 6 -0.6100 -6.0049 -6.4045 23 7 -0.7814 -4.7923 -6.8839 24 14 -0.9937 -7.4925 -7.4672 25 1 -0.7180 -8.7335 -6.6997 26 1 -2.4247 -7.4621 -7.8630 27 1 -0.1429 -7.4643 -8.6840 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6583 2.1316 0.0004 32 1 4.1194 2.1331 0.0095 33 1 5.3551 0.0043 0.0088 34 1 4.1315 -2.1311 0.0004 35 1 3.3868 -4.9105 1.1635 36 1 3.4109 -3.2076 1.6803 37 1 1.9489 -4.5643 3.1539 38 1 1.0041 -3.3489 2.2599 39 1 1.3225 -6.2828 1.4801 40 1 -0.1232 -5.5574 2.2227 41 1 -0.3813 -5.7370 -0.2370 42 1 -0.3565 -4.0341 0.2795 43 1 1.6271 -3.6702 -2.5064 44 1 1.5558 -6.0466 -3.0109 45 1 -0.1194 -6.0427 -2.4090 46 1 -0.7374 -4.3763 -4.1376 47 1 0.9375 -4.3796 -4.7400 48 1 -1.1068 -4.6704 -7.7896 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361772576.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:59 Heat of formation + Delta-G solvation = -38.970736 kcal Electronic energy + Delta-G solvation = -25298.182500 eV Core-core repulsion = 21930.943595 eV Total energy + Delta-G solvation = -3367.238905 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.66724 -38.71390 -36.43233 -35.04911 -32.86037 -32.81376 -30.40953 -30.32936 -29.74026 -27.45158 -26.68700 -24.10420 -23.42723 -22.04341 -21.85401 -21.11167 -20.41330 -19.59146 -17.62589 -16.47194 -16.13265 -15.80873 -15.66140 -15.22642 -14.72343 -14.44353 -14.34095 -14.19862 -13.91688 -13.50230 -13.16114 -13.03045 -12.97328 -12.70789 -12.24873 -12.22693 -12.10023 -12.00699 -11.87166 -11.42991 -11.31675 -11.19554 -11.05571 -10.93521 -10.84272 -10.59913 -10.49225 -10.27321 -10.03247 -9.91361 -9.33607 -9.10260 -8.83922 -8.34093 -8.03794 -7.78199 -5.98158 -4.00759 1.29436 1.45257 3.23998 3.31810 3.39136 3.43030 3.74881 4.37939 4.52538 4.54740 4.71282 4.75926 4.81034 4.98490 4.99966 5.11907 5.19784 5.25752 5.32557 5.37815 5.41202 5.44890 5.48798 5.52290 5.66805 5.70836 5.77150 5.83784 5.86658 5.87417 6.06281 6.14688 6.15742 6.27712 6.31935 6.34237 6.38269 6.42106 6.45226 6.52460 6.63244 6.81485 7.01073 7.47987 7.55899 7.74681 7.84775 7.97285 8.10864 8.45224 9.06855 9.62982 11.13253 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.014273 B = 0.003498 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.265895 B = 8002.916299 C = 9145.919357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.116 4.116 3 C -0.085 4.085 4 C -0.162 4.162 5 C -0.088 4.088 6 C -0.212 4.212 7 C 0.139 3.861 8 O -0.280 6.280 9 C 0.087 3.913 10 H 0.069 0.931 11 C -0.143 4.143 12 C -0.113 4.113 13 C -0.119 4.119 14 C -0.104 4.104 15 C 0.096 3.904 16 H 0.054 0.946 17 N -0.680 5.680 18 C 0.066 3.934 19 C 0.026 3.974 20 C -0.521 4.521 21 H 0.054 0.946 22 C 0.058 3.942 23 N -0.893 5.893 24 Si 0.891 3.109 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.284 1.284 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.125 0.875 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.126 0.874 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.335 0.665 44 H 0.013 0.987 45 H 0.059 0.941 46 H 0.026 0.974 47 H 0.012 0.988 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.683 8.132 19.623 22.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.117 4.117 3 C -0.103 4.103 4 C -0.181 4.181 5 C -0.106 4.106 6 C -0.231 4.231 7 C 0.092 3.908 8 O -0.193 6.193 9 C 0.030 3.970 10 H 0.086 0.914 11 C -0.181 4.181 12 C -0.150 4.150 13 C -0.157 4.157 14 C -0.143 4.143 15 C -0.015 4.015 16 H 0.071 0.929 17 N -0.311 5.311 18 C -0.062 4.062 19 C -0.012 4.012 20 C -0.560 4.560 21 H 0.072 0.928 22 C -0.144 4.144 23 N -0.532 5.532 24 Si 0.719 3.281 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.211 1.211 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.143 0.857 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.144 0.856 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.153 0.847 44 H 0.031 0.969 45 H 0.078 0.922 46 H 0.044 0.956 47 H 0.031 0.969 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.753 8.247 19.676 22.699 hybrid contribution 1.100 -1.149 -1.013 1.886 sum 8.853 7.098 18.663 21.841 Atomic orbital electron populations 1.20600 0.90383 1.02361 1.02768 1.19306 0.96692 0.90345 1.05346 1.20870 0.94086 0.96781 0.98612 1.20969 0.94250 0.97883 1.04977 1.20873 0.99499 0.92007 0.98257 1.21279 0.93296 0.99275 1.09205 1.18909 0.90283 0.86326 0.95243 1.86230 1.34918 1.11361 1.86777 1.22648 0.93867 0.83968 0.96480 0.91358 1.22101 0.98634 1.01914 0.95500 1.21422 0.96368 0.99614 0.97625 1.21563 0.99324 0.97876 0.96966 1.21462 0.97397 1.02365 0.93035 1.21591 0.94981 0.93803 0.91097 0.92869 1.60541 1.48606 1.19787 1.02136 1.22220 0.98042 0.90263 0.95632 1.19060 0.96879 0.96590 0.88639 1.21212 1.43941 0.92841 0.97961 0.92761 1.25001 0.95662 0.95705 0.97989 1.69989 1.46298 1.20548 1.16339 0.86549 0.77994 0.83104 0.80412 1.19788 1.20962 1.21057 0.90973 0.91013 0.92217 0.85732 0.86318 0.86278 0.85616 0.90674 0.91342 0.92320 0.91281 0.92408 0.91898 0.91731 0.90509 0.84701 0.96864 0.92245 0.95581 0.96933 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 9.79 36.00 0.35 -0.88 16 2 C -0.12 -1.48 5.89 -104.48 -0.62 -2.09 16 3 C -0.09 -0.94 9.70 -39.60 -0.38 -1.33 16 4 C -0.16 -1.69 10.04 -39.56 -0.40 -2.09 16 5 C -0.09 -0.94 10.04 -39.61 -0.40 -1.34 16 6 C -0.21 -2.50 8.24 -39.43 -0.33 -2.83 16 7 C 0.14 1.84 6.57 -39.22 -0.26 1.58 16 8 O -0.28 -3.88 7.36 -19.41 -0.14 -4.03 16 9 C 0.09 1.09 1.74 -26.73 -0.05 1.04 16 10 H 0.07 0.84 6.29 -51.93 -0.33 0.51 16 11 C -0.14 -1.46 5.27 -26.73 -0.14 -1.60 16 12 C -0.11 -1.15 5.78 -26.73 -0.15 -1.30 16 13 C -0.12 -1.30 5.92 -26.73 -0.16 -1.45 16 14 C -0.10 -1.44 5.28 -26.73 -0.14 -1.58 16 15 C 0.10 1.38 2.28 -67.72 -0.15 1.22 16 16 H 0.05 0.76 7.80 -51.93 -0.41 0.36 16 17 N -0.68 -12.28 6.17 -106.73 -0.66 -12.94 16 18 C 0.07 1.41 5.42 -3.82 -0.02 1.39 16 19 C 0.03 0.68 5.23 -27.88 -0.15 0.53 16 20 C -0.52 -14.92 9.11 -34.44 -0.31 -15.24 16 21 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 22 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 23 N -0.89 -27.21 13.29 55.43 0.74 -26.47 16 24 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 25 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.90 7.54 -51.93 -0.39 0.51 16 30 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 31 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 32 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 34 H 0.13 1.33 5.43 -52.48 -0.29 1.04 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.66 6.91 -51.93 -0.36 0.30 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.78 7.68 -51.93 -0.40 0.38 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.96 7.46 -51.93 -0.39 0.57 16 42 H 0.08 1.16 7.68 -51.93 -0.40 0.76 16 43 H 0.34 6.07 8.34 -39.29 -0.33 5.74 16 44 H 0.01 0.27 8.06 -51.93 -0.42 -0.14 16 45 H 0.06 1.26 7.44 -51.93 -0.39 0.88 16 46 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 48 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 375.38 15.07 5.66 5.66 Total: -1.00 -30.81 375.38 -11.10 -41.91 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -8.27 Total: 3.44 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: -3.40 Total: -24.38 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.08 Total: -39.41 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: -0.14 Total: -4.03 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.81 -11.10 -41.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361772576.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.937 kcal (2) G-P(sol) polarization free energy of solvation -30.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds