Wall clock time and date at job start Tue Mar 31 2020 07:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38169 * 120.02477 * 2 1 4 4 C 1.38245 * 120.05387 * 179.74306 * 3 2 1 5 5 C 1.38288 * 120.11383 * 0.27273 * 4 3 2 6 6 C 1.38120 * 120.05148 * 359.95803 * 5 4 3 7 7 C 1.38709 * 120.03044 * 180.22199 * 2 1 3 8 8 O 1.35895 * 120.05607 * 359.97438 * 7 2 1 9 9 C 1.42902 * 117.00045 * 174.82102 * 8 7 2 10 10 H 1.09004 * 109.46717 * 324.95279 * 9 8 7 11 11 C 1.52998 * 109.47060 * 84.95480 * 9 8 7 12 12 C 1.52995 * 109.47174 * 60.00075 * 11 9 8 13 13 C 1.53003 * 109.47175 * 59.99813 * 12 11 9 14 14 C 1.52998 * 109.47222 * 300.00158 * 13 12 11 15 15 C 1.52995 * 109.47174 * 59.99841 * 14 13 12 16 16 H 1.09002 * 109.47113 * 60.00073 * 15 14 13 17 17 N 1.46894 * 109.47403 * 180.02562 * 15 14 13 18 18 C 1.46904 * 110.99990 * 275.00406 * 17 15 14 19 19 C 1.53000 * 109.46905 * 179.97438 * 18 17 15 20 20 C 1.50709 * 109.47028 * 179.97438 * 19 18 17 21 21 H 1.07995 * 119.99771 * 359.97438 * 20 19 18 22 22 C 1.37875 * 119.99900 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00051 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99572 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47331 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47134 * 120.00510 * 24 22 20 27 27 H 1.48511 * 109.47122 * 240.00008 * 24 22 20 28 28 H 1.08997 * 109.47519 * 90.00456 * 1 2 3 29 29 H 1.09003 * 109.47192 * 210.00378 * 1 2 3 30 30 H 1.08999 * 109.47686 * 330.00245 * 1 2 3 31 31 H 1.08005 * 119.97337 * 0.02562 * 3 2 1 32 32 H 1.08001 * 119.94549 * 180.25115 * 4 3 2 33 33 H 1.07994 * 119.97410 * 179.97438 * 5 4 3 34 34 H 1.08006 * 120.02381 * 180.02562 * 6 5 4 35 35 H 1.09002 * 109.47041 * 180.02562 * 11 9 8 36 36 H 1.08998 * 109.47152 * 299.99871 * 11 9 8 37 37 H 1.09004 * 109.47334 * 179.97438 * 12 11 9 38 38 H 1.09002 * 109.47113 * 299.99927 * 12 11 9 39 39 H 1.09002 * 109.47006 * 60.00049 * 13 12 11 40 40 H 1.09004 * 109.47179 * 179.97438 * 13 12 11 41 41 H 1.08998 * 109.47152 * 180.02562 * 14 13 12 42 42 H 1.09002 * 109.47041 * 299.99870 * 14 13 12 43 43 H 1.00899 * 111.00469 * 151.04001 * 17 15 14 44 44 H 1.09001 * 109.46951 * 299.99281 * 18 17 15 45 45 H 1.09000 * 109.47149 * 59.99643 * 18 17 15 46 46 H 1.09000 * 109.47281 * 299.99307 * 19 18 17 47 47 H 1.09001 * 109.47689 * 59.99387 * 19 18 17 48 48 H 0.97006 * 119.99867 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5808 1.1970 0.0054 5 6 4.2752 0.0011 0.0051 6 6 3.5887 -1.1974 0.0002 7 6 2.2011 -1.2009 -0.0047 8 8 1.5234 -2.3788 -0.0087 9 6 2.2990 -3.5731 -0.1283 10 1 3.1533 -3.3877 -0.7794 11 6 2.7948 -3.9998 1.2548 12 6 1.5956 -4.2598 2.1686 13 6 0.7309 -5.3718 1.5713 14 6 0.2351 -4.9451 0.1883 15 6 1.4342 -4.6850 -0.7256 16 1 2.0258 -5.5960 -0.8168 17 7 0.9583 -4.2747 -2.0533 18 6 0.6554 -5.4446 -2.8887 19 6 0.1631 -4.9781 -4.2602 20 6 -0.1470 -6.1782 -5.1174 21 1 -0.0066 -7.1739 -4.7235 22 6 -0.6100 -6.0049 -6.4045 23 7 -0.7814 -4.7923 -6.8839 24 14 -0.9937 -7.4925 -7.4672 25 1 -0.7180 -8.7335 -6.6997 26 1 -2.4247 -7.4621 -7.8630 27 1 -0.1429 -7.4643 -8.6840 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6583 2.1316 0.0004 32 1 4.1194 2.1331 0.0095 33 1 5.3551 0.0043 0.0088 34 1 4.1315 -2.1311 0.0004 35 1 3.3868 -4.9105 1.1635 36 1 3.4109 -3.2076 1.6803 37 1 1.9489 -4.5643 3.1539 38 1 1.0041 -3.3489 2.2599 39 1 1.3225 -6.2828 1.4801 40 1 -0.1232 -5.5574 2.2227 41 1 -0.3813 -5.7370 -0.2370 42 1 -0.3565 -4.0341 0.2795 43 1 1.6271 -3.6702 -2.5064 44 1 1.5558 -6.0466 -3.0109 45 1 -0.1194 -6.0427 -2.4090 46 1 -0.7374 -4.3763 -4.1376 47 1 0.9375 -4.3796 -4.7400 48 1 -1.1068 -4.6704 -7.7896 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361772576.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:58 Heat of formation + Delta-G solvation = -55.544923 kcal Electronic energy + Delta-G solvation = -25298.901210 eV Core-core repulsion = 21930.943595 eV Total energy + Delta-G solvation = -3367.957615 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.62220 -39.68345 -37.54763 -36.46994 -34.85683 -33.69807 -31.96888 -31.28435 -30.75942 -28.97868 -27.59751 -25.99958 -24.35599 -23.26994 -22.77485 -22.20975 -22.02505 -20.58507 -18.54095 -18.53196 -17.38545 -16.80049 -16.59236 -16.47911 -16.18622 -15.94892 -15.62592 -15.15020 -14.90520 -14.65548 -14.54248 -14.30716 -14.01828 -13.95549 -13.60348 -13.34645 -13.23023 -13.11625 -12.93137 -12.90374 -12.82041 -12.44423 -12.39264 -12.16815 -12.15028 -11.91661 -11.72076 -11.54209 -11.38258 -11.34326 -11.05319 -10.94586 -10.58542 -9.70610 -9.27385 -8.94926 -8.21366 -6.33372 0.42972 0.57353 1.39259 1.40032 1.53367 2.29325 2.39443 2.88021 3.12027 3.20070 3.56135 3.76392 3.89224 3.97194 3.98509 4.16432 4.23640 4.27868 4.31104 4.41230 4.45111 4.45598 4.52663 4.55538 4.60537 4.67440 4.78674 4.82223 4.85760 4.88407 4.97303 5.02198 5.06291 5.17809 5.21378 5.26905 5.35129 5.36971 5.43719 5.47468 5.56213 5.59164 5.65355 5.65800 5.77812 5.97170 6.12737 6.28046 6.48604 6.61009 6.84161 7.36196 8.91116 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.014273 B = 0.003498 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.265895 B = 8002.916299 C = 9145.919357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.141 4.141 3 C -0.090 4.090 4 C -0.164 4.164 5 C -0.092 4.092 6 C -0.220 4.220 7 C 0.115 3.885 8 O -0.298 6.298 9 C 0.089 3.911 10 H 0.070 0.930 11 C -0.137 4.137 12 C -0.109 4.109 13 C -0.112 4.112 14 C -0.101 4.101 15 C 0.094 3.906 16 H 0.063 0.937 17 N -0.688 5.688 18 C 0.087 3.913 19 C 0.033 3.967 20 C -0.543 4.543 21 H 0.061 0.939 22 C 0.000 4.000 23 N -0.932 5.932 24 Si 0.968 3.032 25 H -0.260 1.260 26 H -0.278 1.278 27 H -0.277 1.277 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.136 0.864 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.048 0.952 42 H 0.056 0.944 43 H 0.333 0.667 44 H 0.020 0.980 45 H 0.058 0.942 46 H -0.009 1.009 47 H -0.012 1.012 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.239 7.458 20.827 24.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.142 4.142 3 C -0.108 4.108 4 C -0.182 4.182 5 C -0.110 4.110 6 C -0.238 4.238 7 C 0.069 3.931 8 O -0.211 6.211 9 C 0.032 3.968 10 H 0.088 0.912 11 C -0.175 4.175 12 C -0.147 4.147 13 C -0.150 4.150 14 C -0.140 4.140 15 C -0.015 4.015 16 H 0.081 0.919 17 N -0.319 5.319 18 C -0.042 4.042 19 C -0.004 4.004 20 C -0.582 4.582 21 H 0.080 0.920 22 C -0.198 4.198 23 N -0.573 5.573 24 Si 0.792 3.208 25 H -0.184 1.184 26 H -0.204 1.204 27 H -0.203 1.203 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.163 0.837 32 H 0.163 0.837 33 H 0.162 0.838 34 H 0.154 0.846 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.151 0.849 44 H 0.038 0.962 45 H 0.076 0.924 46 H 0.009 0.991 47 H 0.006 0.994 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.318 7.574 20.905 24.109 hybrid contribution 0.622 -0.835 -1.377 1.727 sum 9.940 6.739 19.528 22.925 Atomic orbital electron populations 1.20536 0.90528 1.02711 1.01833 1.19566 0.97001 0.91089 1.06515 1.21175 0.94773 0.96933 0.97908 1.21346 0.94125 0.99015 1.03718 1.21245 1.00882 0.91631 0.97233 1.21471 0.92764 1.00384 1.09206 1.19172 0.91167 0.86202 0.96550 1.86198 1.35778 1.11946 1.87217 1.22637 0.93087 0.83089 0.97955 0.91238 1.22080 0.98772 1.02879 0.93725 1.21397 0.96013 0.98601 0.98660 1.21521 1.00000 0.98546 0.94953 1.21418 0.96811 1.00863 0.94870 1.21696 0.95733 0.95094 0.89013 0.91941 1.60451 1.49506 1.18642 1.03323 1.21810 0.98010 0.91077 0.93259 1.18901 0.94612 0.95429 0.91474 1.21633 1.44158 0.93616 0.98759 0.92045 1.26000 0.95203 0.99037 0.99559 1.70130 1.47029 1.23120 1.16974 0.85355 0.77888 0.79198 0.78320 1.18426 1.20361 1.20264 0.92523 0.92438 0.90069 0.83736 0.83705 0.83793 0.84649 0.88965 0.90506 0.90092 0.92845 0.91143 0.90989 0.93310 0.92539 0.84939 0.96183 0.92357 0.99099 0.99382 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.45 9.79 71.23 0.70 -1.75 16 2 C -0.14 -3.61 5.89 -19.77 -0.12 -3.73 16 3 C -0.09 -1.88 9.70 22.26 0.22 -1.67 16 4 C -0.16 -3.06 10.04 22.28 0.22 -2.84 16 5 C -0.09 -1.77 10.04 22.25 0.22 -1.55 16 6 C -0.22 -4.97 8.24 22.37 0.18 -4.79 16 7 C 0.11 3.07 6.57 22.51 0.15 3.22 16 8 O -0.30 -8.46 7.36 -92.36 -0.68 -9.14 16 9 C 0.09 2.18 1.74 30.59 0.05 2.23 16 10 H 0.07 1.66 6.29 -2.38 -0.01 1.65 16 11 C -0.14 -2.52 5.27 30.59 0.16 -2.35 16 12 C -0.11 -2.03 5.78 30.59 0.18 -1.85 16 13 C -0.11 -2.28 5.92 30.59 0.18 -2.09 16 14 C -0.10 -2.82 5.28 30.59 0.16 -2.66 16 15 C 0.09 2.71 2.28 44.92 0.10 2.81 16 16 H 0.06 1.71 7.80 -2.39 -0.02 1.69 16 17 N -0.69 -25.74 6.17 -491.57 -3.04 -28.77 16 18 C 0.09 3.78 5.42 86.30 0.47 4.25 16 19 C 0.03 1.84 5.23 29.85 0.16 2.00 16 20 C -0.54 -31.68 9.11 25.60 0.23 -31.45 16 21 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 22 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 23 N -0.93 -58.18 13.29 21.45 0.28 -57.89 16 24 Si 0.97 44.89 29.54 68.60 2.03 46.92 16 25 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 26 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 27 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.06 1.54 7.54 -2.39 -0.02 1.52 16 30 H 0.08 1.56 8.09 -2.39 -0.02 1.54 16 31 H 0.14 2.31 8.06 -2.91 -0.02 2.28 16 32 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 33 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 34 H 0.14 2.67 5.43 -2.91 -0.02 2.65 16 35 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.08 1.32 6.91 -2.39 -0.02 1.30 16 37 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.05 1.18 7.68 -2.39 -0.02 1.16 16 39 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 41 H 0.05 1.48 7.46 -2.39 -0.02 1.46 16 42 H 0.06 1.78 7.68 -2.39 -0.02 1.77 16 43 H 0.33 12.58 8.34 -89.69 -0.75 11.83 16 44 H 0.02 0.84 8.06 -2.39 -0.02 0.82 16 45 H 0.06 2.53 7.44 -2.39 -0.02 2.51 16 46 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 47 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 48 H 0.26 15.36 8.31 -92.70 -0.77 14.59 16 Total: -1.00 -68.22 375.38 2.51 -65.72 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.18 Total: 24.94 kcal Atomic # 6 Polarization: -45.50 SS G_CDS: 3.73 Total: -41.77 kcal Atomic # 7 Polarization: -83.91 SS G_CDS: -2.75 Total: -86.66 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -0.68 Total: -9.14 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -68.22 2.51 -65.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361772576.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.173 kcal (2) G-P(sol) polarization free energy of solvation -68.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds